0000000000821581
AUTHOR
Arnaud Boucher
A 3D deep learning approach based on Shape Prior for automatic segmentation of myocardial diseases
Accurate three-dimensional (3D) cardiac segmentation from late gadolinium enhancement (LGE)-MRI plays a critical role in designing a structure of reference for diagnosing many cardiac pathologies such as ischemia, myocarditis and myocardial infarction. This segmentation is however still a non-trivial task, due to the motion artifacts during acquisition, and heterogeneous intensity distributions. In this study, we develop a fully 3D automated model based on deep neural networks (DNN) for LGE-MRI myocardial pathologies (scar and No-reflow tissues) segmentation in a new expert annotated dataset. Considering that damaged tissue constitutes a small area of the whole LGE-MRI, we concentrated on m…
A 3D Network Based Shape Prior for Automatic Myocardial Disease Segmentation in Delayed-Enhancement MRI
Abstract Objectives: In this work, a new deep learning model for relevant myocardial infarction segmentation from Late Gadolinium Enhancement (LGE)-MRI is proposed. Moreover, our novel segmentation method aims to detect microvascular-obstructed regions accurately. Material and methods: We first segment the anatomical structures, i.e., the left ventricular cavity and the myocardium, to achieve a preliminary segmentation. Then, a shape prior based framework that fuses the 3D U-Net architecture with 3D Autoencoder segmentation framework to constrain the segmentation process of pathological tissues is applied. Results: The proposed network reached outstanding myocardial segmentation compared wi…
Segmentation Integrating Watershed and Shape Priors Applied to Cardiac Delayed Enhancement MR Images
International audience; Background: In recent years, there has been a rapid rise in the use of shape priors applied to segmentation process of medical images. Previous approaches on left ventricle segmentation from Delayed-Enhancement Magnetic Resonance Imaging (DE-MRI) have focused on the extraction of myocardium or just diseased region in short axis orientation. However these studies did not take into account the segmentation of non-diseased myocardium from DE-MRI. The segmentation of non-diseased myocardium from DE-MRI, has some useful applications. For instance it can simplify the PET-MR registration process.Methods: This paper presents a novel semi-automatic segmentation method of non-…
A deep learning approach for the segmentation of myocardial diseases
Cardiac left ventricular (LV) segmentation is a paramount essential step for both diagnosis and treatment of cardiac pathologies such as ischemia, myocardial infarction, arrhythmia and myocarditis. However, this segmentation is challenging due to high variability across patients and the potential lack of contrast between structures. In this work, we propose and evaluate a (2.5D) SegU-Net model based on the fusion of two deep learning segmentation techniques (U-Net and Seg-Net) for automated LGE-MRI (Late gadolinium enhanced magnetic resonance imaging) myocardial disease (infarct core and no-reflow region) quantification in a new multifield expert annotated dataset. Given that the scar tissu…
Efficient 3D Deep Learning for Myocardial Diseases Segmentation
Automated myocardial segmentation from late gadolinium enhancement magnetic resonance images (LGE-MRI) is a critical step in the diagnosis of cardiac pathologies such as ischemia and myocardial infarction. This paper proposes a deep learning framework for improved myocardial diseases segmentation. In the first step, we build an encoder-decoder segmentation network that generates myocardium and cavity segmentations from the whole volume, followed by a 3D U-Net based on Shape prior to identifying myocardial infarction and myocardium ventricular obstruction (MVO) segmentations from the encoder-decoder prediction. The proposed network achieves good segmentation performance, as computed by avera…