0000000001231847

AUTHOR

Jean Baptiste Aubin

showing 1 related works from this author

Human-Driven Microbiological Contamination of Benthic and Hyporheic Sediments of an Intermittent Peri-Urban River Assessed from MST and 16S rRNA Gene…

2017

International audience; Rivers are often challenged by fecal contaminations. The barrier effect of sediments against fecal bacteria was investigated through the use of a microbial source tracking (MST) toolbox, and by Next Generation Sequencing (NGS) of V5-V6 16S rRNA gene (rrs) sequences. Non-metric multi-dimensional scaling analysis of V5-V6 16S rRNA gene sequences differentiated bacteriomes according to their compartment of origin i.e., surface water against benthic and hyporheic sediments. Classification of these reads showed the most prevalent operating taxonomic units (OTU) to be allocated to Flavobacterium and Aquabacterium. Relative numbers of Gaiella, Haliangium, and Thermoleophilu…

0301 basic medicinePollutionMicrobiology (medical)benthic and hyporheic sedimentsmedia_common.quotation_subject[SDV]Life Sciences [q-bio]030106 microbiologyFECA CONTAMINATIONBiologyMicrobiologyarn ribosomal 16s03 medical and health sciencesperi-urban riverzone hyporhéique14. Life underwatermedia_commonOriginal ResearchEcologyBENTHIC AND HYPORHEIC SEDIMENTSMICROBIAL COMMUNITYHIGH THROUGH PUT SEQUENCING (HTS)zone benthiquebiology.organism_classification6. Clean waterFecal coliformAquabacteriumhigh throughput sequencing (HTS)Microbial population biology13. Climate actionBenthic zonefecal contaminationperi-urban river;benthic and hyporheic sediments;microbial community;high throughput sequencing (HTS);fecal contaminationcontamination biologiquePERI-URBAN RIVERCombined sewermicrobial communitySurface waterFlavobacterium
researchProduct