Molecules and morphology reveal cryptic variation among digeneans infecting sympatric mullets in the Mediterranean.

SUMMARYWe applied a combined molecular and morphological approach to resolve the taxonomic status of Saccocoelium spp. parasitizing sympatric mullets (Mugilidae) in the Mediterranean. Eight morphotypes of Saccocoelium were distinguished by means of multivariate statistical analyses: 2 of Saccocoelium obesum ex Liza spp.; 4 of S. tensum ex Liza spp.; and 2 (S. cephali and Saccocoelium sp.) ex Mugil cephalus. Sequences of the 28S and ITS2 rRNA gene regions were obtained for a total of 21 isolates of these morphotypes. Combining sequence data analysis with a detailed morphological and multivariate morphometric study of the specimens allowed the demonstration of cryptic diversity thus rejecting…

Towards a Unified Functional Trait Framework for Parasites

Trait-based research holds high potential to unveil ecological and evolutionary processes. Functional traits are fitness-related characteristics of individuals, which are measured at individual level and defined without using information external to the individual. Despite the usefulness of the functional approach to understand the performance of individuals in ecosystems, and parasitism being the most common life-history strategy on Earth, studies based on functional traits of parasites are still scarce. Since the choice of functional traits is a critical step for any study, we propose a core list of seven functional traits of metazoan parasites, related to three universal challenges faced…

A new species of the genus Zalophotrema (Digenea: Campulidae), Zalophotrema atlanticum n. sp., from the liver of the striped dolphin Stenella coeruleoalba (Meyen, 1833) (Cetacea: Delphinidae) in Atlantic waters

Zalophotrema atlanticum n. sp. from the liver of a striped dolphin, Stenella coeruleoalba (Meyen, 1833), stranded in the Canary Islands is described. This new species differs from the other Zalophotrema species in body dimensions and relative size and position of the suckers and cirrus-sac. This is the first record of a species of the genus Zalophotrema in the striped dolphin, and the Atlantic Ocean constitutes a new locality record for this genus.

Hundreds of nuclear and plastid loci yield novel insights into orchid relationships.

Pérez-Escobar, Oscar Alejandro, Dodsworth, Steven, Bogarín, Diego, Bellot, Sidonie, Balbuena, Juan A, Schley, Rowan J, Kikuchi, Izai A, Morris, Sarah K, Epitawalage, Niroshini, Cowan, Robyn, Maurin, Olivier, Zuntini, Alexandre, Arias, Tatiana, Serna-Sánchez, Alejandra, Gravendeel, Barbara, Torres Jimenez, Maria Fernanda, Nargar, Katharina, Chomicki, Guillaume, Chase, Mark W, Leitch, Ilia J, Forest, Félix, Baker, William J (2021): Hundreds of nuclear and plastid loci yield novel insights into orchid relationships. American journal of botany 108 (7): 1166-1180, DOI: http://doi.org/10.5281/zenodo.7778176

Native and invasive hosts play different roles in host–parasite networks

Parasites are often key players in biological invasions since they can mediate the impact of host invasions or can themselves become invasive species. However, the nature and extent of parasite‐mediated invasions are often difficult to delineate. Here, we used individual‐based, weighted bipartite networks to study the roles (degrees of interactions of individuals in a modular network according to their within‐ and among‐module connections) played by native and invasive host individuals to their parasite communities. We studied two phylogenetically and ecologically close fish species, Mugil cephalus s.l. and Planiliza haematocheilus (Teleostei: Mugilidae). Planiliza haematocheilus is native …

Evolutionary morphology in shape and size of haptoral anchors in 14 Ligophorus spp. (Monogenea: Dactylogyridae).

The search for phylogenetic signal in morphological traits using geometric morphometrics represents a powerful approach to estimate the relative weights of convergence and shared evolutionary history in shaping organismal form. We assessed phylogenetic signal in the form of ventral and dorsal haptoral anchors of 14 species of Ligophorus occurring on grey mullets (Osteichthyes: Mugilidae) from the Mediterranean, the Black Sea and the Sea of Azov. The phylogenetic relationships among these species were mapped onto the morphospaces of shape and size of dorsal and ventral anchors and two different tests were applied to establish whether the spatial positions in the morphospace were dictated by …

Spatial structure of helminth communities in the golden grey mullet, Liza aurata (Actinopterygii: Mugilidae), from the Western Mediterranean.

Ecological investigations regarding the parasite fauna of grey mullets are scarce. The present study provides a detailed description of the helminth communities of Liza aurata in the Spanish western Mediterranean and analyzes the role of spatial, temporal, and host variables in shaping the infracommunities. In total, 204 fish were collected in 2 localities, situated ca. 290 km apart, in spring and fall of 2004 and 2005. A non-metric multidimensional scaling (NMDS) was used to visualize an ordination of the infracommunities according to their relative similarities in parasite abundances. The relationship between infracommunity composition and explanatory variables (host size, locality, year,…

Hadwenius tursionis (Marchi, 1873) n. comb. (Digenea, Campulidae) from the bottlenose dolphin Tursiops truncatus (Montagu, 1821) in the western Mediterranean

The taxonomic position of Synthesium tursionis (Marchi, 1873) (Digenea, Campulidae) is revised, based on material from 147 worms from four bottlenose dolphins Tursiops truncatus stranded off the Comunidad Valenciana (Spanish western Mediterranean). The species is transferred to Hadwenius, as H. tursionis n. comb., and characterised by a high length/width ratio of the body, spinose cirrus and unarmed metraterm. Synthesium, a monotypic genus, becomes a synonym of Hadwenius. The intraspecific variation of some morphological traits is briefly discussed.

Molecular phylogeny of species of Ligophorus (Monogenea: Dactylogyridae) and their affinities within the Dactylogyridae.

The taxonomic framework of Ligophorus, monogenean specialists of the gills of grey mullets (Mugilidae), is evaluated and its interspecific relationships are assessed for the first time using molecular data. The position of Ligophorus within the paraphyletic Ancyrocephalinae is re-assessed based on newly sequenced species. Furthermore, the relationship between morphometric and genetic interspecific similarities is evaluated. Partial 28S and complete ITS1 rDNA sequences from representatives of 14 of the 16 nominal species of Ligophorus from the Mediterranean, Black and Azov Seas were analysed together with published sequences of members of the Dactylogyridae. The phylogenetic analyses of the …

Corynosoma cetaceum in the stomach of Franciscanas, pontoporia blainvillei (Cetacea): an exceptional case of habitat selection by an Acanthocephalan

Adult acanthocephalans are typically found in the intestine of vertebrates, where they can readily absorb nutrients. However, Corynosoma cetaceum has been frequently reported in the stomach of cetaceans from the Southern Hemisphere. The ecological significance of this habitat was investigated by examining data on number, sex ratio, maturity status, biomass, and fecundity of C. cetaceum in different parts of the digestive tract of 44 franciscanas Pontoporia blainvillei. Individual C. cetaceum occurred in the pyloric stomach (PS) and, to lesser degrees, in the duodenal ampulla (DA) and the main stomach (MS). Females outnumbered males in all chambers, although the sex ratio was closer to 1:1 i…

Topological congruence between phylogenies of Anacanthorus spp. (Monogenea: Dactylogyridae) and their Characiformes (Actinopterygii) hosts: A case of host-parasite cospeciation

Cophylogenetic studies aim at testing specific hypotheses to understand the nature of coevolving associations between sets of organisms, such as host and parasites. Monogeneans and their hosts provide and interesting platform for these studies due to their high host specificity. In this context, the objective of the present study was to establish whether the relationship between Anacanthorus spp. with their hosts from the upper Paraná River and its tributaries can be explained by means of cospeciation processes. Nine fish species and 14 monogenean species, most of them host specific, were studied. Partial DNA sequences of the genes RAG1, 16S and COI of the fish hosts and of the genes ITS2, …

Phenotypic plasticity in haptoral structures of Ligophorus cephali (Monogenea: Dactylogyridae) on the flathead mullet (Mugil cephalus): A Geometric Morphometric Approach

Abstract Evaluating phenotypic plasticity in attachment organs of parasites can provide information on the capacity to colonise new hosts and illuminate evolutionary processes driving host specificity. We analysed the variability in shape and size of the dorsal and ventral anchors of Ligophorus cephali from Mugil cephalus by means of geometric morphometrics and multivariate statistics. We also assessed the morphological integration between anchors and between the roots and points in order to gain insight into their functional morphology. Dorsal and ventral anchors showed a similar gradient of overall shape variation, but the amount of localised changes was much higher in the former. Statist…

How students perceive the university's mission in a Spanish university: Liberal versus entrepreneurial education?

AbstractThis study explores the extent to which undergraduate students perceive a dichotomy between a liberal vs. an entrepreneurial model of university. This research is important in that it compares the stated aims of university education, particularly within the Bologna Process, with students' expectations regarding liberal education and employability. A Likert-type questionnaire containing 25 statements reflecting liberal and entrepreneurial features of university education was answered by 488 students from 10 disciplines at the University of Valencia, Spain, just before the implantation of the Bologna curriculum. An exploratory factor analysis revealed that students clearly perceive th…

Anisakid larvae in the musculature of the Argentinean hake, Merluccius hubbsi

We report the infection levels of third-stage anisakid larva in the muscle of the Argentinean hake, Merluccius hubbsi, in relation to fish size and location in the musculature. The musculature of 42 hake was separated into hypaxial (ventral) and epiaxial (dorsal) parts and surveyed for nematode larvae. Two anisakid species were detected: Anisakis sp. (prevalence, 52.4%; mean +/- SD abundance, 1.2 +/- 1.7) and Pseudoterranova sp. (prevalence, 9.5%; mean +/- SD abundance, 0.2 +/- 0.7). Since the fish were gutted after capture, the occurrence of anisakids in the flesh indicates that the worms had migrated into the muscle before capture. The number of Anisakis sp. in muscle was not correlated w…

Ligophorus pilengas n. sp. (monogenea: ancyrocephalidae) from the introduced so-iuy mullet, mugil soiuy (teleostei: mugilidae), in the sea of Azov and the Black sea

The monogenean Ligophorus chabaudi was originally described on the gills of the flathead mullet, Mugil cephalus, and was subsequently reported on the So-iuy mullet, Mugil soiuy. However, the morphology of sclerotized parts and multivariate statistical analyses suggest that the form from the So-iuy mullet represents a new species. This study provides a description of the new species Ligophorus pilengas n. sp. and provides additional morphological data concerning the morphology of the ventral bar that might be useful for the diagnosis of Ligophorus. Ligophorus pilengas n. sp. is the second species of Ligophorus reported on the So-iuy mullet. Zoogeographical records indicate that L. pilengas n…

Contribution to the taxonomy of the family Campulidae Odhner, 1926 (Digenea) by means of a morphometric multivariate analysis

Digeneans of the family Campulidae occur exclusively in marine mammals, particularly in cetaceans. Their taxonomy is confused, being based on adult morphology only. We used a multivariate discriminant analysis of morphometric data to provide new evidence on the taxonomy of the Campulidae. Measurements of 217 specimens from 21 species of all seven genera of the family were taken. The percentage of specimens correctly assigned into their own species was 96.3%. The first three discriminant functions accounted for most of the variation between the species, which were grouped together in suprageneric groups along the first and the second function. The ordination pattern observed conforms partly …

Intestinal helminth communities of the long-finned pilot whale (Globicephala melas) off the Faroe Islands.

SUMMARYThe intestines of 170 long-finned pilot whales, Globicephala melas, caught off the Faroe Islands (N.E. Atlantic) were examined for helminth parasites. Eight species were detected but only 4 occurred in at least 10% of the sample. No core or recurrent group of species were identified and no correlations between abundances of species were significant. Diversity values were far below those reported for other endotherms. Colonization by helminths was random, whales not being readily colonized. These features point to largely unpredictable, isolationist infracommunities, there being little potential for inter-specific interactions. Older hosts tended to harbour more diverse infracommuniti…

Robinia aurata n. g., n. sp. (Digenea: Hemiuridae) from the mugilid Liza aurata with a molecular confirmation of its position within the Hemiuroidea.

Robinia aurata n. g., n. sp. is described from Liza aurata (Mugilidae), the golden grey mullet, from the Ebro Delta, Spanish Mediterranean. The new genus differs from all other hemiurid genera in the combined possession of muscular flanges and a vestigial ecsoma. Within the Bunocotylinae, which currently accommodates 2 genera, Bunocotyle and Saturnius, the new genus exhibits a unique combination of blind caeca, Juel's organ, post-ovarian bulk of the uterus in the hind-body, and tegumental papillae surrounding the oral and ventral sucker apertures. Furthermore, Robinia n. g. differs from both Bunocotyle and Saturnius in the nature of the muscular extensions around the oral sucker, with the s…

Assembly rules of helminth parasite communities in grey mullets: combining components of diversity.

Abstract Organisms aggregate in ecological communities. It has been widely debated whether these associations are explained by deterministic or, in contrast, random processes. The answer may vary, depending on the level of an organisational scale (α, β and γ) and the facet of diversity considered: taxonomic, functional and phylogenetic. Diversity at the level of a sampling unit (i.e. host individual) is the α diversity; β diversity represents the extent of dissimilarity in diversity among sampling units (within a level of an organisational scale, β1; between levels of an organisational scale, β2); and the total diversity of a system is γ diversity. Thus, the combination of facets and levels…

Role of Crassicauda sp. in natural mortality of pantropical spotted dolphins Stenella attenuata: a reassesment

Evaluating the effect of parasites on population size is essential for designing management and conservation plans of wild animal populations. Although knowledge in this area is scarce in cetaceans, current evidence suggests that species of the nematode genus Crassicauda may play an important regulatory role in some populations. In the present study, a semiparametric regression technique is applied to a previously published dataset to re-examine the role of Crassicauda sp. in natural mortality of pantropical spotted dolphins Stenella attenuata. The resulting model indicated parasite-induced mortality at ages between 6.5 and 9 years and at roughly 12 years. The maximum mortality estimates ob…

Testing the enemy release hypothesis: abundance and distribution patterns of helminth communities in grey mullets (Teleostei: Mugilidae) reveal the success of invasive species

International audience; The abundance and aggregation patterns of helminth communities of two grey mullet hosts, Liza haematocheilus and Mugil cephalus, were studied across 14 localities in Atlantic and Pacific marine areas. The analysis matched parasite communities of (i) L. haematocheilus across its native and introduced populations (Sea of Japan and Sea of Azov, respectively) and (ii) the introduced population of L. haematocheilus with native populations of M. cephalus (Mediterranean, Azov-Black and Japan Seas). The total mean abundance (TMA), as a feature of the infection level in helminth communities, and slope b of the Taylor’s power law, as a measure of parasite aggregation at the in…

A new species of the genusCrassicaudaLeiper et Atkinson, 1914 (Nematoda: Spiruroidea) from the penis ofGlobicephala melas(Traill, 1809) (Cetacea: Globicephalidae) in the western mediterranean sea

The examination of a male long-finned pilot whale (Globicephala melas) stranded at Cullera (Spanish Mediterranean coast) resulted in the finding of nematodes of the genus Crassicauda parasitising the penis. Pathologies associated with these worms were observed and are described here. The morphometric and morphological study of these helminths revealed that they represent a new species, Crassicauda carbonelli n. sp., which differs from other species of the genus Crassicauda in body size, cephalic morphology and spicule size in the males. Crassicauda sp. described by Dollfus (1968) must be ascribed to C. carbonelli n. sp. The taxonomy, morphometric variability of the eggs, site in the hosts, …

Parasites as indicators of social structure and stock identity of marine mammals

Abstract Introduction: the use of parasites as biological indicators of marine mammals has not yet received all the necessary attention. The aim of this review is to show the value of parasite data in studies of stock identity and social structure. Methods: the application of the technique to marine mammals is hampered by the lack of control over sampling conditions and the paucity of information about the biology of their parasites. Relevant criteria for, suitable parasite tags are discussed. Case studies: previous work on marine mammals is presented to illustrate the usefulness and limitations of parasite data. A study of pilot whales revealed that differences in helminth infections betwe…

Lung-worms (Nematoda: Pseudaliidae) of harbour porpoises (Phocoena phocoena) in Norwegian waters: patterns of colonization

SUMMARYWe studied the component community of lung-worms of the harbour porpoise, attempting to establish the relative importance of ecological and evolutionary factors on its development. The lungs of 64 porpoises by-caught in Norwegian waters were examined for helminths. Three pseudaliid species were detected. The porpoises appear to be readily colonized by lung-worms, the structure of the component community of calves being fairly similar to that of the remainder. Prenatal and/or transmammary infections might partly account for these early infections. However, host age was correlated with the number of lung-worm species, suggesting that the lung-worms may have heteroxenous cycles similar …

Ontogenetic Habitat Selection by Hadwenius pontoporiae (Digenea: Campulidae) in the Intestine of Franciscanas (Cetacea)

The linear habitat selection of 4 sequential maturity stages (1, 2, 3, and 4) of the trematode Hadwenius pontoporiae in the intestines of 26 South American dolphins Pontoporia blanvillei was investigated. The franciscana is a suitable host for H. pontoporiae because all 26 hosts were infected, the infrapopulations being composed mostly of gravid (stage 4) worms. Most trematodes were found in the first third of the intestine. The niches of the maturity stages decreased from stage 1 to 4. Gravid worms favored the most anterior part of the duodenum, whereas stages 1, 2, and 3 occurred more posteriorly in every host. The distributions of the maturity stages showed a narrow site fidelity and wer…

Real-time RT-PCR detection of betanodavirus in naturally and experimentally infected fish from Spain

Infections with betanodavirus affect a wide range of wild and farmed fish species throughout the world, mostly from the marine environment. The aim of this work was to develop and validate real-time RT-PCR assays for sensitive and specific detection of nodavirus in diseased or carrier fish. The new detection assay was used to study the transmission and development of nodavirus infection in juvenile sea bass, Dicentrarchus labrax (L.), challenged by different routes, and also to screen for nodavirus in various farmed fish species. On average, the sensitivity was 10-100 times higher than a standard RT-PCR, and the assay was able to detect asymptomatic carrier fish that otherwise could have be…

Corynosoma cetaceumin the Stomach of Franciscanas,Pontoporia blainvillei(Cetacea): an Exceptional Case of Habitat Selection by an Acanthocephalan

Adult acanthocephalans are typically found in the intestine of vertebrates, where they can readily absorb nutrients. However, Corynosoma cetaceum has been frequently reported in the stomach of cetaceans from the Southern Hemisphere. The ecological significance of this habitat was investigated by examining data on number, sex ratio, maturity status, biomass, and fecundity of C. cetaceum in different parts of the digestive tract of 44 franciscanas Pontoporia blainvillei. Individual C. cetaceum occurred in the pyloric stomach (PS) and, to lesser degrees, in the duodenal ampulla (DA) and the main stomach (MS). Females outnumbered males in all chambers, although the sex ratio was closer to 1:1 i…

Establishing the relative importance of sympatric definitive hosts in the transmission of the sealworm, Pseudoterranova decipiens: a host-community approach

The importance of a given host to a particular parasite can be determined according to three different criteria: host preference, host physiological suitability and host contribution to transmission. Most studies on the sealworm Pseudoterranova decipiens have focussed on the latter factor, but few attempts have been made to develop a quantitative transmission model evaluating the relative importance of each host. The purpose of this study was to propose a flow-chart model to study sealworm transmission within a seal community. The model was applied to hypothetical data of four seal species acting as definitive hosts of P. decipiens sensu stricto in eastern Canada: harp seal Phoca groenlandi…

Biometric variability of Hadwenius tursionis (Marchi, 1873) (Digenea, Campulidae) from the intestine of the bottlenose dolphin Tursiops truncatus (Montagu, 1821)

The species discrimination in the family Campulidae is largely based on morphometric characters (absolute measurements and ratios). To assess the variability of this characters we have studied the campulid species Hadwenius tursionis from four Mediterranean bottlenose dolphins Tursiops truncatus from the Western Mediterranean. In H. tursionis most absolute measurements differed significantly across the infrapopulations, showing high coefficients of variation. Only egg dimensions appeared to be fairly conservative. Body ratios were less variable than absolute measurements, but growth patterns did vary significantly between the infrapopulations studied. None of the ratios previously used in r…

Aggregation patterns of helminth populations in the introduced fish, Liza haematocheilus (Teleostei: Mugilidae): disentangling host–parasite relationships

International audience; A number of hypotheses exist to explain aggregated distributions, but they have seldom been used to investigate differences in parasite spatial distribution between native and introduced hosts. We applied two aggregation models, the negative binomial distribution and Taylor's power law, to study the aggregation patterns of helminth populations from Liza haematocheilus across its native (Sea of Japan) and introduced (Sea of Azov) distribution ranges. In accordance with the enemy release hypothesis, we predicted that parasite populations in the introduced host range would be less aggregated than in the native host area, because aggregation is tightly constrained by abu…

Invasive parasites are detectable by their abundance-occupancy relationships: the case of helminths from Liza haematocheilus (Teleostei: Mugilidae)

Abstract The biogeographic patterns of abundance and prevalence of helminths from Liza haematocheilus were studied across its native (Sea of Japan) and introduced (Sea of Azov) distribution ranges. Abundance-occupancy relationships (AORs) were tested for the core-satellite and enemy release (ERH) species hypotheses in eight and 14 host samples from the native and introduced host ranges, respectively. The AOR model fitted parasite data extremely well, irrespective of whether the host or the parasite species were native or invasive. Except for co-introduced monogeneans, species were less abundant and prevalent in the introduced host population than in the native one, which agrees well with th…

Estudio taxonómico y ecológico de la parasitofauna del Calderón común, Globicephala melas (Traill, 1809), en las aguas de Europa

Rumbling Orchids: How To Assess Divergent Evolution Between Chloroplast Endosymbionts and the Nuclear Host.

Phylogenetic relationships inferred from multilocus organellar and nuclear DNA data are often difficult to resolve because of evolutionary conflicts among gene trees. However, conflicting or "outlier" associations (i.e., linked pairs of "operational terminal units" in two phylogenies) among these data sets often provide valuable information on evolutionary processes such as chloroplast capture following hybridization, incomplete lineage sorting, and horizontal gene transfer. Statistical tools that to date have been used in cophylogenetic studies only also have the potential to test for the degree of topological congruence between organellar and nuclear data sets and reliably detect outlier …

Hundreds of nuclear and plastid loci yield insights into orchid relationships

ABSTRACTPremise of the studyEvolutionary relationships in the species-rich Orchidaceae have historically relied on organellar DNA sequences and limited taxon sampling. Previous studies provided a robust plastid-maternal phylogenetic framework, from which multiple hypotheses on the drivers of orchid diversification have been derived. However, the extent to which the maternal evolutionary history of orchids is congruent with that of the nuclear genome has remained uninvestigated.MethodsWe inferred phylogenetic relationships from 294 low-copy nuclear genes sequenced/obtained using the Angiosperms353 universal probe set from 75 species representing 69 genera, 16 tribes and 24 subtribes. To test…

Phenotypic tradeoffs between egg number and egg size in three parasitic anisakid nematodes

Phenotypic tradeoffs between number and size of eggs were tested in three component populations of three marine anisakid nematodes: Anisakis simplex, Pseudoterranova decipiens and Contracaecum osculatum. Body and uterine volumes (as proxies of female size), and egg number, mean egg volume and clutch volume (as descriptors of reproductive output) were measured in 50 females of each species. Evidence of a phenotypic tradeoff was detected only in A. simplex; the first time that has been found in a parasite population. Comparison of feasible values inferred from the van Noordwijk and de Jong's model and current data showed that interindividual variation in egg size was narrower than expected in…

Diclidophora merlangi (Monogenea: Diclidophoridae) on Atlantic cod, Gadus morhua.

Diclidophora merlangi (Kuhn, in Nordmann, 1832), as species specific to whiting, Merlangius merlangus (Linnaeus, 1758), is reported and described for the first time on the gills of Atlantic cod Gadus morhua (Linnaeus, 1758). Of the about 1,200 cod examined in this article, only 2 specimens of D. merlangi occurred on 2 fish, suggesting that they represented accidental infections. The 2 specimens showed specific traits of D. merlangi, but their size was considerably smaller than that of D. merlangi on whiting. Principal-component analyses showed that the morphology of the specimens on cod was more similar to that of D. merlangi than those of other congeneric species from the North Atlantic, a…

Fuzzy quantification of common and rare species in ecological communities (FuzzyQ)

International audience; Most species in ecological communities are rare, whereas only a few are common. This distributional paradox has intrigued ecologists for decades but the interpretation of species abundance distributions remains elusive.We present Fuzzy Quantification of Common and Rare Species in Ecological Communities (FuzzyQ) as an R package. FuzzyQ shifts the focus from the prevailing species-categorization approach to develop a quantitative framework that seeks to place each species along a rarity-commonness gradient. Given a community surveyed over a number of sites, quadrats, or any other convenient sampling unit, FuzzyQ uses a fuzzy clustering algorithm that estimates a probab…

Kudoa trifolia sp. n. ? molecular phylogeny suggests a new spore morphology and unusual tissue location for a well-known genus

A new species of myxozoan, Kudoa trifolia sp. n., was found in various organs of the golden grey mullet, Liza aurata (Risso), and the thinlip mullet, L. ramada (Risso), from the western Mediterranean. Spores developed in subspherical plasmodia of 0.28-1 mm diameter within connective tissue, predominantly in the spleen, the outer wall of the gall bladder and the gut, the mesenteries and occasionally also in the gills. The spores of K. trifolia differ from the commonly known shape of Kudoa by considerable enlargement of one of the four valve cells, thus forming a 'spore body', which contains the major part of the binucleate sporoplasm. Scanning electron microscopy of the spores revealed the p…

Phenotypic Buffering in a Monogenean: Canalization and Developmental Stability in Shape and Size of the Haptoral Anchors of Ligophorus cephali (Monogenea: Dactylogyridae).

Phenotypic variation results from the balance between sources of variation and counteracting regulatory mechanisms. Canalization and developmental stability are two such mechanisms, acting at two different levels of regulation. The issue of whether or not they act concurrently as a common developmental buffering capacity has been subject to debate. We used geometric morphometrics to quantify the mechanisms that guarantee phenotypic constancy in the haptoral anchors of Ligophorus cephali. Canalization and developmental stability were appraised by estimating inter- and intra-individual variation, respectively, in size and shape of dorsal and ventral anchors. The latter variation was estimated…

Are epizoites biological indicators of a western Mediterranean striped dolphin die-off?

During a die-off of Mediterranean striped dolphins Stenella coeruleoalba in 1990-91, 82 individuals stranded on the Spanish coast were examined for crustacean ectoparasites and epizoites. Six species were detected: Syncyarnus aequus, PenneUa sp., Xenobalanus globicipitis, Conchoderma virgatum, Lepas pectinata and Lepas cf. hillii. The barnacles L. pectinata and L. cf. hillii are reported here for the first time on cetaceans; they were attached to the teeth. C. virgaturn was also found on the teeth; this is an unusual attachment on cetaceans. X. globicipitis showed a higher prevalence on the dolphins studied than on those stranded in the same months before (1980 to 1990) and after (1991 to 1…

Fuzzy Quantification of Common and Rare Species in Ecological Communities (FuzzyQ)

Abstract1. Most species in ecological communities are rare whereas only a few are common. This distributional paradox has intrigued ecologists for decades but the interpretation of species abundance distributions remains elusive.2. We present Fuzzy Quantification of Common and Rare Species in Ecological Communities (FuzzyQ) as an R package. FuzzyQ shifts the focus from the prevailing species-categorization approach to develop a quantitative framework that seeks to place each species along a rare-commonness gradient. Given a community surveyed over a number of sites, quadrats, or any other convenient sampling unit, FuzzyQ uses a fuzzy clustering algorithm that estimates a probability for eac…

Diphyllobothriids (Cestoda: Pseudophyllidea) from the long-finned pilot whale Globicephala melas (Traill, 1809) off the Faroe Islands, with comments on the taxonomy of Diphyllobothrium Cobbold, 1858 species from cetaceans

The taxonomy of marine species of the genus Diphyllobothrium, particularly those parasitic in cetaceans, is rather confused. During parasitological investigations of long-finned pilot whales Globicephala melas from waters off the Faroe Islands, five diphyllobothriid species were detected: Diphyllobothrium sp. (possibly D. polyrugosum), D. stemmacephalum, Diphyllobothrium sp. A, Diphyllobothrium sp. B and Diphyllobothriidae sp. D. stemmacephalum is reported for the first time from G. melas. The stituation regarding the taxonomy of Diphylobothrium species from cetaceans is briefly reviewed. It is concluded that the recent development of genetic techniques may be of great value in relation to …

Parasite infracommunities as predictors of harvest location of bogue (Boops boops L.): a pilot study using statistical classifiers

The accuracy of classifying bogue (Boops boops) according to the fishery from which it was harvested was evaluated by applying several statistical classification techniques to fish parasite abundances. Bogue captured in 2001 in two fisheries off the Atlantic coast of Spain were compared with one off the Spanish Mediterranean coast. One hundred bogue were classified to each harvest location (fishery) using different numbers of parasite species chosen as predictors by a best subset method. Two parametric methods of classification (linear and quadratic discriminant analysis) were compared with two non-parametric approaches (k-nearest neighbour classification and feed-forward neural network) an…

Evaluation of three methods for biomass estimation in small invertebrates, using three large disparate parasite species as model organisms

AbstractInvertebrate biomass is considered one of the main factors driving processes in ecosystems. It can be measured directly, primarily by weighing individuals, but more often indirect estimators are used. We developed two indirect and non-destructive approaches to estimate biomass of small invertebrates in a simple manner. The first one was based on clay modelling and the second one was based on image analysis implemented with open-source software. Furthermore, we tested the accuracy of the widely used geometric approximation method (third method). We applied these three different methods to three morphologically disparate model species, an acanthocephalan worm, a crustacean and a flatw…

Biodiversidad en el Siglo XXI: más allá del conteo de especies

In modern ecology, the traditional diversity indexes (usually of richness, abundance, and species evenness) have been highly revealing and useful for monitoring community and ecosystem processes. However, around two decades ago, a pioneering research team noticed that these indexes did not completely resolve their open questions. Thus, they suggested changing the way biodiversity was measured. At its base, this new methodology considers the distance between species (in phylogenetic or functional terms) before subsequently applying the appropriate biodiversity indexes. Including phylogenetic and functional elements in the evaluation of diversity allows us to approach the concept of biodivers…

Growth and emigration of third-stage larvae of Hysterothylacium aduncum (Nematoda: Anisakidae) in larval herring Clupea harengus

The growth and emigration of Hystherothylacium aduncum in laboratory-reared herring larvae Clupea harengus was studied. Experimental infections of 36-day-old herring larvae resulted in 126 hosts infected with 306 H. aduncum larvae. Regression analyses showed a significant worm emigration from the rectum to the head of the fish, accompanied by an increase in worm body length. The emigration was independent of worm intensity, which suggests an ontogenetic process. Some worms departed from this pattern by moving posteriorly or by penetrating into the muscle, and in 5 cases, the larvae were observed to leave living fish. This individual variation has not been observed in previous studies and mi…

POPULATION STRUCTURE OF ANISAKIS SIMPLEX (NEMATODA) IN HARBOR PORPOISES PHOCOENA PHOCOENA OFF DENMARK

The population structure and habitat selection of Anisakis simplex in 35 harbor porpoises off Denmark are described. The nematodes were collected from the stomach and duodenal ampulla and were categorized as third-stage larvae, fourth-stage larvae, subadults, and adults. The porpoises harbored 8,043 specimens of A. simplex. The proportion of adults and subadults increased with infrapopulation size. The number of development stages across infrapopulations covaried significantly (Kendall's test of concordance). Concordance was higher in hosts with the highest intensities than in those with low and medium intensities. All stages occurred mainly in the forestomach, but this trend was stronger f…

Sensitivity of bipartite network analyses to incomplete sampling and taxonomic uncertainty

Bipartite network analysis is a powerful tool to study the processes structuring interactions in ecological communities. In applying the method, it is assumed that the sampled interactions provide an accurate representation of the actual community. However, acquiring a representative sample may be difficult as not all species are equally abundant or easily identifiable. Two potential sampling issues can compromise the conclusions of bipartite network analyses: failure to capture the full range of interactions (sampling completeness) and use of a taxonomic level higher than species to evaluate the network (taxonomic resolution). We asked how commonly used descriptors of bipartite antagonisti…

A new cystidicolid nematode from Mullus surmuletus (Perciformes: Mullidae) from the western Mediterranean.

Ascarophis valentina n. sp. is described from Mullus surmuletus off the Valencian coast of Spain on the basis of both light and scanning electron microscopy. It can be distinguished from the other members of the genus by the length of the left (long) spicule of the males and by egg morphology. An updated grouping of the species of Ascarophis considered valid is provided with respect to these characters. The new species resembles Ascarophis capelanus, belonging to the group of species possessing eggs with a single polar knob with filaments, but is distinguished by the size of the body, the length of the esophagus (especially in relation to body length), the position of the vulva, and the siz…

Interrelationships of the Haploporinae (Digenea: Haploporidae): A molecular test of the taxonomic framework based on morphology

The taxonomic framework of the Haploporidae is evaluated and the relationships within the Haploporinae are assessed for the first time at the generic level using molecular data. Partial 28S and complete ITS2 rDNA sequences from representatives of six of the nine recognised genera within the Haploporinae were analysed together with published sequences representing members of two haploporid subfamilies and of the closely related family Atractotrematidae. Molecular analyses revealed: (i) a close relationship between the Atractotrematidae and the Haploporidae; (ii) strong support for the monophyly of the Haploporinae, Dicrogaster and Saccocoelium, and the position of Ragaia within the Haplopori…

paco: implementing Procrustean Approach to Cophylogeny in R

Summary The concordance of evolutionary histories and extant species interactions provides a useful metric for addressing questions of how the structure of ecological communities is influenced by macro-evolutionary processes. We introduce paco (v0.3.1), an R package to perform Procrustean Approach to Cophylogeny. This method assesses the phylogenetic congruence, or evolutionary dependence, of two groups of interacting species using both ecological interaction networks and their phylogenetic history. We demonstrate the functionality of paco through its application to empirical host-parasite and plant-pollinator communities. Although the package is intended to assess the phylogenetic congruen…

Population Structure and Habitat Selection by Anisakis simplex in 4 Odontocete Species from Northern Argentina

We described the population structure and habitat selection of Anisakis simplex in 46 franciscanas, Pontoporia blainvillei, 8 Burmeister's porpoises, Phocoena spinnipinis, 2 Dusky dolphins, Lagenorhynchus ob- scurus, and 2 common dolphins, Delphinus delphis, caught incidentally in the coastal fisheries of northern Argentina. Prevalence ranged from 50% to 100%, but mean intensities were low (1.0-3.6), suggesting that A. simplex has low recruitment rates to coastal dolphins in this area. Adult nematodes were found exclusively in the main stomach of 64.5% of franciscanas (the first stomach of this species) and the forestomach of 50% of Burmeister's porpoises and Dusky dolphins. Other developme…

Taxonomic revision of the Atlantic and Pacific species of Ligophorus (Monogenea, Dactylogyridae) from mullets (Teleostei, Mugilidae) with the proposal of a new genus and description of four new species.

A revision of the Atlantic and Pacific species of Ligophorus Euzet et Suriano, 1977 based on abundant newly sampled material from mugilids of the Mediterranean Sea, Sea of Japan and South China Sea, as well as available type and voucher specimens, is presented. All 35 nominal species of Ligophorus known from the Atlantic and the Pacific waters are treated. Of them, 30 are considered valid, one incertae sedis (L. leporinus), one species inquirendae (L. chongmingensis), two junior synonyms (L. euzeti and L. gussevi) and one is transferred to another genus. Three new species of Ligophorus are described: L. triangularis, L. miroshnichenki, and L. rectus. An amended diagnosis of Ligophorus is gi…

Living Together: The Parasites of Marine Mammals

The reader may wonder why, within a book of biology and conservation of marine mammals, a chapter should be devoted to their parasites. There are four fundamental reasons. First, parasites represent a substantial but neglected facet of biodiversity that still has to be evaluated in detail (Windsor, 1995; Hoberg, 1997; Brooks and Hoberg, 2000. Perception of parasites among the public are negative and, thus, it may be hard for politicians to justify expenditure in conservation programmes of such organisms. However, many of the reasons advanced for conserving biodiversity or saving individual species also apply to parasites (Marcogliese and Price, 1997; Gompper and Williams, 1998). One fundame…

DESCRIPTION AND MORPHOMETRICAL VARIABILITY OF A NEW SPECIES OF LIGOPHORUS AND OF LIGOPHORUS CHABAUDI (MONOGENEA: DACTYLOGYRIDAE) ON MUGIL CEPHALUS (TELEOSTEI) FROM THE MEDITERRANEAN BASIN

A comparative morphological study of specimens of Ligophorus spp. from Mugil cephalus in western Mediterranean and the Black Sea localities has been carried out, indicating the presence of 2 distinct forms, i.e., Ligophorus chabaudi and Ligophorus cephali n. sp. A detailed description of the latter and an up-to-date redescription of L. chabaudi are provided. The existence of these 2 morphological species was additionally supported by principal component analysis based on 19 metric characters of 87 specimens arranged in samples defined by parasite species and geographical locality. The analysis indicated consistent differences between species but not between localities; this pattern was well…

Comparison of a Manual and an Automated Method to Estimate the Number of Uterine Eggs in Anisakid Nematodes: To Coulter or Not to Coulter. Is That the Question?

Studies reporting numbers of eggs in vagina and utero in nematodes often give little information of the technique used for the estimations. This situation hampers comparison among studies, because, so far, differences in estimations provided by different techniques have not been assessed. This note examines whether a manual method based on visual counts in aliquots and an automated method using a Coulter counter yield equivalent estimations of egg numbers in vagina and utero of 3 anisakid nematode species (Anisakis simplex, Pseudoterranova decipiens, and Contracaecum osculatum). The number of eggs from 50 females per nematode species was estimated using both techniques. The automated and ma…

Three species of Magnibursatus Naidenova, 1969 (Digenea: Derogenidae) from Atlantic and Black Sea marine teleosts

Three species of Magnibursatus Naidenova, 1969 are described from marine teleosts: M. skrjabini (Vlasenko, 1931), the type species of the genus, from the gobiid Zosterisessor ophiocephalus on the Bulgarian Black Sea coast; M. bartolii sp. n. from the sparid Boops boops off the Atlantic coast of Spain; and M. minutus sp. n. from the gobiid Neogobius eurycephalus on the Bulgarian Black Sea coast. M. bartolii differs from all other Magnibursatus species in its larger sinus-sac (length >250 µm, width >150 µm) and the more posterior location of testes. This species is also unusual in that it occurs in the branchial chamber and on the gills of its host. M. minutus is distinguished by the distinct…

A New Species of Ligophorus (Monogenea: Dactylogyridae) from the gills of the Flathead Mullet Mugil cephalus (Teleostei: Mugilidae) from Mexico

AbstractA new monogenean species, Ligophorus yucatanensis n. sp. from the gills of the flathead mullet Mugil cephalus from the Yucatan Peninsula, Mexico, is described. The new species can be differentiated from all other species of Ligophorus by the morphology of the accessory piece of the copulatory organ. Its main lobe is cylindrical, tunnelled expanded distally, slightly bowed with a characteristic membranous opening at level of medial bifurcation of the accessory piece, forming a thick-walled bulbshaped expansion that ends in a round labium. The secondary lobe is spatulate, straight, and shorter than the main lobe. In addition, the new species can be distinguished from other species by …

Beyond counting species : a new way to look at biodiversity

In modern ecology, the traditional diversity indices (usually of richness, abundance, and species evenness) have been highly revealing and useful for monitoring community and ecosystem processes. However, around two decades ago, a pioneering research team noticed that these indices did not completely resolve their open questions. Thus, they suggested changing the way biodiversity was measured. At its base, this new methodology considers the distance between species (in phylogenetic or functional terms) before subsequently applying the appropriate biodiversity indices. Including phylogenetic and functional elements in the evaluation of diversity allows us to approach the concept of biodivers…

Random Tanglegram Partitions (Random TaPas): An Alexandrian Approach to the Cophylogenetic Gordian Knot

Abstract Symbiosis is a key driver of evolutionary novelty and ecological diversity, but our understanding of how macroevolutionary processes originate extant symbiotic associations is still very incomplete. Cophylogenetic tools are used to assess the congruence between the phylogenies of two groups of organisms related by extant associations. If phylogenetic congruence is higher than expected by chance, we conclude that there is cophylogenetic signal in the system under study. However, how to quantify cophylogenetic signal is still an open issue. We present a novel approach, Random Tanglegram Partitions (Random TaPas) that applies a given global-fit method to random partial tanglegrams of …

Assessing the efficacy of direct conservation interventions: clutch protection of the leatherback marine turtle in the Dominican Republic

AbstractThe beaches of Jaragua National Park in the Dominican Republic are the country's last known major nesting site for the leatherback marine turtle Dermochelys coriacea. This nesting aggregation is threatened by widespread illegal egg take, and clutch relocation and artificial incubation have been carried out as protection measures since 1974. We assess the efficacy of such efforts and investigate how artificial incubation may be influencing the success and sex ratios of clutches. We compare hatching success, incubation duration and embryo mortality in in-situ clutches (n = 43) with those incubated artificially at sites in the east and west of the Park (n = 35 and n = 31, respectively)…

Redescription ofOdhneriella subtila (Skrjabin, 1959) (Digenea: Campulidae) from the intestine ofGlobicephala melaena (Traill, 1809) (Cetacea: Delphinidae) off the Faroe Islands (North-East Atlantic)

During parasitological investigations of long-finned pilot whales,Globicephala melaena (Traill, 1809), in the Faroe Islands, the trematode speciesOdhneriella subtila (Digenea: Campulidae), parasitising the small intestine, was detected. Skrjabin's (1959) original description of this species was based on a single individual. The collection and availability for study of several thousands of specimens permitted the redescription of this campulid and the noting of some new morphological characters. This trematode is reported for the first time from the long-finned pilot whale, and the Atlantic Ocean is a new locality record.

Paradiplozoon iraqensis n. sp. (Monogenea: Diplozoinae) from Cyprinion macrostomum (Cyprinidae) in the Tigris River, Iraq

A new species of monogenean diplozoid, Paradiplozoon iraqensis n. sp., from the gills of Cyprinion macrostomum Heckel from the Tigris River in Tikrit, Iraq is described. P. iraqensis n. sp. is distinguished from other species of the genus by the size of plicae on the fore- and hind body, the number of the branches of the intestinal caecum in fore body, intestinal caecum not extending to haptor, the size of the clamps and the morphology of the clamp sclerites, and by the length of the central hooks. Details of the shape and size of eggs, and of the reproductive system and prohaptoral region are provided. The present study raises the number of species of Paradiplozoon recorded in Iraq to 15.

New data on the early development of Hysterothylacium aduncum (Nematoda, Anisakidae).

This note reports on incidental observations of the early development of the third-stage larvae of Hysterothylacium aduncum from gadid fishes. Gravid H. aduncum females were collected from Pollachius virens, Pollachius pollachius. Gadus morhua, and Molva molva in Norwegian waters. The eggs were incubated at 20 per thousand salinity and 5 C. Spontaneous hatching of third-stage larvae was observed 10-25 days after egg deposition. These larvae were long lived and could infect Acartia tonsa copepods, the infections being maintained for up to 34 days. The morphology of the third-stage larvae in the copepods and some traits of the life cycle were similar to those reported in previous studies. How…

Author Correction: Evaluation of three methods for biomass estimation in small invertebrates, using three large disparate parasite species as model organisms

Invertebrate biomass is considered one of the main factors driving processes in ecosystems. It can be measured directly, primarily by weighing individuals, but more often indirect estimators are used. We developed two indirect and non-destructive approaches to estimate biomass of small invertebrates in a simple manner. The first one was based on clay modelling and the second one was based on image analysis implemented with open-source software. Furthermore, we tested the accuracy of the widely used geometric approximation method (third method). We applied these three different methods to three morphologically disparate model species, an acanthocephalan worm, a crustacean and a flatworm. To …

Next-generation cophylogeny: unravelling eco-evolutionary processes

A fundamental question in evolutionary biology is how microevolutionary processes translate into species diversification. Cophylogeny provides an appropriate framework to address this for symbiotic associations, but historically has been primarily limited to unveiling patterns. We argue that it is essential to integrate advances from ecology and evolutionary biology into cophylogeny, to gain greater mechanistic insights and transform cophylogeny into a platform to advance understanding of interspecific interactions and diversification more widely. We discuss key directions, such as incorporating trait reconstruction and considering multiple scales of network organization, and highlight rece…

PACo: a novel procrustes application to cophylogenetic analysis.

We present Procrustean Approach to Cophylogeny (PACo), a novel statistical tool to test for congruence between phylogenetic trees, or between phylogenetic distance matrices of associated taxa. Unlike previous tests, PACo evaluates the dependence of one phylogeny upon the other. This makes it especially appropriate to test the classical coevolutionary model that assumes that parasites that spend part of their life in or on their hosts track the phylogeny of their hosts. The new method does not require fully resolved phylogenies and allows for multiple host-parasite associations. PACo produces a Procrustes superimposition plot enabling a graphical assessment of the fit of the parasite phyloge…

Prácticas docentes para la zoología y botánica en los nuevos planes de estudio.1.

Nuestra propuesta intenta promover el uso de las TIC´s (tecnologías de la información y la comunicación) en las clases prácticas de Zoología y Botánica (dos materias obligatorias para estudiantes de 2º curso de Biología y de Ciencias Ambientales) a través del uso de un DVD interactivo que contiene los materiales para las dos sesiones prácticas, el estudio de la morfología funcional del cráneo de los mamíferos y una salida al campo virtual a un área protegida para reconocer plantas y animales comprendiendo sus relaciones ecológicas en los diferentes hábitats. En el ámbito universitario, estas herramientas informáticas, se pueden emplear como ayuda pedagógica antes o después de la asistencia …

Data from: Rumbling orchids: how to assess divergent evolution between chloroplast endosymbionts and the nuclear host

Phylogenetic relationships inferred from multilocus organellar and nuclear DNA data are often difficult to resolve because of evolutionary conflicts among gene trees. However, conflicting or “outlier” associations (i.e., linked pairs of “operational terminal units” in two phylogenies) among these data sets often provide valuable information on evolutionary processes such as chloroplast capture following hybridization, incomplete lineage sorting, and horizontal gene transfer. Statistical tools that to date have been used in cophylogenetic studies only also have the potential to test for the degree of topological congruence between organellar and nuclear data sets and reliably detect outlier …