0000000001296274

AUTHOR

Kalina Peneva

0000-0001-5578-3266

showing 7 related works from this author

Tackling the Limitations of Copolymeric Small Interfering RNA Delivery Agents by a Combined Experimental–Computational Approach

2019

Despite the first successful applications of nonviral delivery vectors for small interfering RNA in the treatment of illnesses, such as the respiratory syncytial virus infection, the preparation of a clinically suitable, safe, and efficient delivery system still remains a challenge. In this study, we tackle the drawbacks of the existing systems by a combined experimental-computational in-depth investigation of the influence of the polymer architecture over the binding and transfection efficiency. For that purpose, a library of diblock copolymers with a molar mass of 30 kDa and a narrow dispersity (Đ1.12) was synthesized. We studied in detail the impact of an altered block size and/or compos…

Small interfering RNAPolymers and PlasticsBioengineering02 engineering and technologyComputational biologyBiology010402 general chemistry01 natural sciencesVirusBiomaterialsDrug Delivery SystemsText miningMaterials ChemistryHumansComputer SimulationRNA Small Interferingbusiness.industryRNA021001 nanoscience & nanotechnology0104 chemical sciencesHEK293 CellsModels ChemicalMCF-7 Cells0210 nano-technologybusinessHeLa CellsBiomacromolecules
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The guanidinium group as a key part of water-soluble polymer carriers for siRNA complexation and protection against degradation.

2014

Here, the preparation of a novel block copolymer consisting of a statistical copolymer N-(2-hydroxypropyl) methacrylamide-s-N-(3-aminopropyl) methacrylamide and a short terminal 3-guanidinopropyl methacrylamide block is reported. This polymer structure forms neutral but water-soluble nanosized complexes with siRNA. The siRNA block copolymer complexes are first analyzed using agarose gel electrophoresis and their size is determined with fluorescence correlation spectroscopy. The protective properties of the polymer against RNA degradation are investigated by treating the siRNA block copolymer complexes with RNase V1. Heparin competition assays confirm the efficient release of the cargo in vi…

chemistry.chemical_classificationAcrylamidesMaterials sciencePolymers and PlasticsMicroscale thermophoresisRNase PPolymersOrganic ChemistryWaterFluorescence correlation spectroscopyPolymerchemistry.chemical_compoundchemistryAgarose gel electrophoresisPolymer chemistryEndoribonucleasesMaterials ChemistryCopolymerMethacrylamideMoleculeRNA Small InterferingGuanidineMacromolecular rapid communications
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Modulation of mitochondriotropic properties of cyanine dyes by in organello copper-free click reaction

2017

Cyanine (Cy) dyes show a general propensity to localize in polarized mitochondria. This mitochondriotropism was used to perform a copper-free click reaction in the mitochondria of living cells. The in organello reaction of dyes Cy3 and Cy5 led to a product that was easily traceable by Forster resonance energy transfer (FRET). As determined by confocal laser scanning microscopy, the Cy3-Cy5 conjugate showed enhanced retention in mitochondria, relative to that of the starting compounds. This enhancement of a favorable property can be achieved by synthesis in organello, but not outside mitochondria.

0301 basic medicinechemistry.chemical_elementBiochemistryCell Line03 medical and health scienceschemistry.chemical_compoundConfocal laser scanning microscopyFluorescence Resonance Energy TransferOrganic chemistryAnimalsCyanineMolecular BiologyFluorescent DyesMicroscopy ConfocalOrganic ChemistryfungiCarbocyaninesCopperMitochondriaRats030104 developmental biologyFörster resonance energy transferchemistryMitochondrial targetingClick chemistryBiophysicsMolecular MedicineClick ChemistryCopperConjugateChemBioChem
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Bioconjugation of Small Molecules to RNA Impedes Its Recognition by Toll-Like Receptor 7

2017

A fundamental mechanism of the innate immune system is the recognition, via extra- and intracellular pattern recognition receptors, of pathogen-associated molecular patterns. A prominent example is represented by foreign nucleic acids, triggering the activation of several signaling pathways. Among these, the endosomal toll-like receptor 7 (TLR7) is known to be activated by single stranded RNA (ssRNA), which can be specifically influenced through elements of sequence structure and posttranscriptional modifications. Furthermore, small molecules TLR7 agonists (smTLRa) are applied as boosting adjuvants in vaccination processes. In this context, covalent conjugations between adjuvant and vaccine…

0301 basic medicineMessenger RNAGene knockdownToll-like receptormRNAImmunologyPattern recognition receptorRNATLR7BiologyMolecular biologyCell biology03 medical and health sciencessmall molecules030104 developmental biologysiRNAclick chemistryNucleic acidImmunology and Allergytoll-like receptorimmunostimulationbioconjugateSingle-Stranded RNAOriginal ResearchFrontiers in Immunology
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Novel cleavable cell-penetrating peptide-drug conjugates: synthesis and characterization

2014

We report the first drug conjugate with a negatively charged amphipathic cell-penetrating peptide. Furthermore, we compare two different doxorubicin cell-penetrating peptide conjugates, which are both unique in their properties, due to their net charge at physiological pH, namely the positively charged octaarginine and the negatively charged proline-rich amphipathic peptide. These conjugates were prepared exploiting a novel heterobifunctional crosslinker to join the N-terminal cysteine residue of the peptides with the aliphatic ketone of doxorubicin. This small linker contains an activated thiol as well as aminooxy functionality, capable of generating a stable oxime bond with the C-13 carbo…

Pharmacologychemistry.chemical_classificationStereochemistryOrganic ChemistryPeptideGeneral MedicineGlutathioneBiochemistryResidue (chemistry)chemistry.chemical_compoundchemistryStructural BiologyDrug DiscoveryDrug deliveryCell-penetrating peptideMolecular MedicineMolecular BiologyLinkerConjugateCysteineJournal of Peptide Science
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Overcoming the barrier of CD8+ T cells: Two types of nano-sized carriers for siRNA transport

2019

Abstract Bioengineering immune cells via gene therapy offers treatment opportunities for currently fatal viral infections. Also cell therapeutics offer most recently a breakthrough technology to combat cancer. These primary human cells, however, are sensitive to toxic influences, which make the utilization of optimized physical transfection techniques necessary. The otherwise commonly applied delivery agents such as LipofectamineⓇ or strongly cationic polymer structures are not only unsuitable for in vivo experiments, but are also highly toxic to immune cells. This study aimed to improve the design of polymeric carrier systems for small interfering RNA, which would allow efficient internali…

Small interfering RNAChemistrymedia_common.quotation_subjectGenetic enhancement0206 medical engineeringCellBiomedical Engineering02 engineering and technologyGeneral MedicineTransfection021001 nanoscience & nanotechnology020601 biomedical engineeringBiochemistryBiomaterialsImmune systemmedicine.anatomical_structuremedicineBiophysicsGene silencing0210 nano-technologyInternalizationCytotoxicityMolecular BiologyBiotechnologymedia_commonActa Biomaterialia
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Site-specific incorporation of perylene into an N-terminally modified light-harvesting complex II.

2010

Employing the utility of the native chemical ligation, site-specific attachment of an ultrastable perylene dye to a derivative of the major light-harvesting complex (LHCII) was demonstrated. Biochemical analysis of the conjugate indicated that the structure and function of LHCII remain largely unaffected by the N-terminal modification.

Molecular Sequence DataLight-Harvesting Protein Complexes010402 general chemistryPhotochemistry01 natural sciencesBiochemistry03 medical and health scienceschemistry.chemical_compoundPhysical and Theoretical ChemistryFLUORESCENCEPROTEIN LIGATIONPerylene030304 developmental biologyFluorescent DyesPlant Proteins0303 health sciencesSTABILITYOrganic ChemistryMICROSCOPYPlantsNative chemical ligationFluorescenceLIVE CELLS0104 chemical sciencesStructure and functionchemistryBiophysicsSMALL-MOLECULE PROBESCYSTEINEPeryleneDerivative (chemistry)DYESCysteineConjugateLight harvesting complex IIOrganicbiomolecular chemistry
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