0000000001299596
AUTHOR
Juli Peretăł
Additional file 1: of Gene connectivity and enzyme evolution in the human metabolic network
Figure S1. Reaction graph generated from the human metabolic network reconstruction Recon3D. Figure S2. Distribution of the selection estimates calculated for genes with 1:1 orthologs in the 6 species (Human, Chimpanzee, Gorilla, Orangutan, Mouse, and Rat) in the global metabolic network. Figure S3. Correlation matrices between variables. Figure S4. Relationship between selection estimates and connectivity (degree, in-degree and out-degree) in the global metabolic network. Figure S5. Relationship between selection estimates and position. Figure S6. Number of genes under positive selection in each functional pathway of the global metabolic network. Figure S7. Distribution of the number of en…
MOESM7 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures
Additional file 7: Table S7. Number of reads and mean length of reads for bacteria from the methane stages.
MOESM8 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures
Additional file 8: Table S8. Number of reads and mean length of reads for archaea from the methane stages.
MOESM3 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures
Additional file 1: Figure S3. SDS-PAGE displaying the protein profiles.
MOESM2 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures
Additional file 5: Table S2. Overview of reaction stages and reactor performance.
Additional file 1: Table S1. of Standards not that standard
Biobrick parts (Bb1 to Bb6) included in the different DNA constructions tested in this work. Table S2. Proteins displaying statistically significant alterations in their expression levels, as detected by iTRAQ analysis (DOCX 18 kb).
MOESM1 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures
Additional file 4: Table S1. Description of the used seed sludge.
MOESM6 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures
Additional file 6: Table S6. Number of sequences and mean length for bacteria from the acidification stages.
MOESM4 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures
Additional file 2: Table S4. Mascot results.
MOESM5 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures
Additional file 3: Table S5. Differentially expressed proteins.
Additional file 2: of Gene connectivity and enzyme evolution in the human metabolic network
Table S1. Reaction graph. List of edges of the directed reaction graph generated formed by the giant connected component of Recon3D. Table S2. Genes under positive selection in the global metabolic network. Table S3. Genes under recent positive selection in individual metabolic pathways. Table S4. Connectivity of metabolic genes under positive selection compared to the rest of metabolic genes in individual metabolic pathways. Table S5. Global metabolic network giant connected component gene/reaction information. Table S6. Individual metabolic pathways gene/reaction information. (XLSX 4140 kb)