0000000001313232

AUTHOR

José Paulo Sampaio

showing 5 related works from this author

Yeasts vectored by migratory birds collected in the Mediterranean island of Ustica and description of Phaffomyces usticensis f.a. sp. nov., a new spe…

2014

Nine yeast species belonging to genera Candida , Cryptococcus , Phaffomyces , Rhodotorula and Wickerhamomyces , and one species of Aureobasidium genus were isolated from the cloaca of migratory birds. Candida glabrata and C. inconspicua were the species most frequently isolated and Wickerhamomyces sylviae , which has recently been described as a new species isolated from bird cloaca, was again found. The majority of isolates showed the ability to grow up to 40 °C and/or at pH 3.0, two environmental conditions typical of the digestive tract of birds. The phylogenetic analysis of the D1/D2 domain of 26S rRNA gene placed the cultures of Phaffomyces in a new lineage that differed from the close…

Cactaceaephenotypic characterizationMolecular Sequence DataCryptococcusAureobasidiumRhodotorulaApplied Microbiology and BiotechnologyMicrobiologyNew species Yeast birdsBirdscactus-yeastMediterranean IslandsWickerhamomycesAscomycotaGenusPhaffomyces usticensis sp. novBotanyAnimalsPhylogenyRibosomalPhylogenetic treebiologyCandida glabrataphylogenetic analysisGeneral Medicinebiology.organism_classificationnovel speciesDelichon urbicumSettore AGR/11 - Entomologia Generale E ApplicataPhenotypeRNA RibosomalCactusRNADelichon urbicum; Phaffomyces usticensis sp. nov.; cactus-yeast; novel species; phenotypic characterization; phylogenetic analysis; Animals; Ascomycota; Birds; Cactaceae; Mediterranean Islands; Molecular Sequence Data; Phenotype; Phylogeny; RNA RibosomalSettore AGR/16 - Microbiologia Agraria
researchProduct

Wickerhamomyces sylviae f.a., sp. nov., an ascomycetous yeast species isolated from migratory birds.

2013

In the present work, we investigated the phylogenetic position and phenotypic characteristics of eight yeast isolates collected from migratory birds on the island of Ustica, Italy. A phylogenetic analysis based on the D1/D2 region of the large-subunit rRNA gene showed that all isolates clustered as a single separate lineage within the Wickerhamomyces clade. They exhibited distinct morphological and physiological characteristics and were clearly separated from their closest relatives, Wickerhamomyces lynferdii, Wickerhamomyces anomalus and Wickerhamomyces subpelliculosus, in blastn searches. On the basis of the isolation source, physiological features and molecular strain typing carried out …

Wickerhamomyces anomalusLineage (evolution)Molecular Sequence DataWickerhamomyces; Birds; YeastZoologyMinisatellite RepeatsBiologyWickerhamomyceMicrobiologyBirdsWickerhamomycesBirdPhylogeneticsBotanyRibosome SubunitsAnimalsDNA FungalMycological Typing TechniquesEcology Evolution Behavior and SystematicsPhylogenyIslandsPhylogenetic treeFungal geneticsDNAGeneral MedicineSequence Analysis DNARibosomal RNARibosome Subunits Large EukaryoticDNA FingerprintingYeastRAPDRandom Amplified Polymorphic DNA TechniqueFungalAnimal Migration; Animals; Birds; DNA Fingerprinting; DNA Fungal; Islands; Italy; Minisatellite Repeats; Molecular Sequence Data; Mycological Typing Techniques; Random Amplified Polymorphic DNA Technique; Ribosome Subunits Large Eukaryotic; Saccharomycetales; Sequence Analysis DNA; PhylogenyItalySaccharomycetalesLargeEukaryoticAnimal MigrationSequence AnalysisSettore AGR/16 - Microbiologia AgrariaInternational journal of systematic and evolutionary microbiology
researchProduct

Jaminaea phylloscopi sp. nov. (Microstromatales), a basidiomycetous yeast isolated from migratory birds in the Mediterranean basin.

2016

During a survey of yeasts vectored by migratory birds in the Mediterranean basin, isolations from the cloacae of members of the order Passeriformes collected in Ustica (Italy) were performed. Based on phylogenetic analysis of the D1/D2 domain of the 26S rRNA gene and the internal transcribed spacer ITS1-5.8S rRNA gene-ITS2 region, five yeast isolates clustered in a new lineage within the Microstromatales clade. The DNA sequences of these isolates differed from those of their closest relatives, Jaminaea angkorensis and Jaminaea lanaiensis, by 20 and 25 nt substitutions in the D1/D2 domain and 119 and 131 nt substitutions in the complete ITS region, respectively. In addition, the five isolate…

0301 basic medicineLineage (evolution)BiologyMicrobiologyBirds03 medical and health sciencesCloacaDNA Ribosomal SpacerAnimalsInternal transcribed spacerCladeDNA FungalMycological Typing TechniquesEcology Evolution Behavior and SystematicsPhylogenyGeneticsBase CompositionPhylogenetic treeAccession number (library science)Microbiology; Ecology Evolution Behavior and SystematicsMycoBankBasidiomycotaGeneral MedicineRibosomal RNARAPDRNA Ribosomal 5.8SRandom Amplified Polymorphic DNA Technique030104 developmental biologyItalyRNA RibosomalSettore AGR/16 - Microbiologia AgrariaInternational journal of systematic and evolutionary microbiology
researchProduct

Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids

2014

Reticulate evolution can be a major driver of diversification into new niches, especially in disturbed habitats and at the edges of ranges. Industrial fermentation strains of yeast provide a window into these processes, but progress has been hampered by a limited understanding of the natural diversity and distribution of Saccharomyces species and populations. For example, lager beer is brewed with Saccharomyces pastorianus, an alloploid hybrid of S. cerevisiae and S. eubayanus, a species only recently discovered in Patagonia, Argentina. Here, we report that genetically diverse strains of S. eubayanus are readily isolated from Patagonia, demonstrating that the species is well established the…

PopulationMolecular Sequence DataArgentinaBiologyNucleotide diversityCiencias BiológicasSaccharomycesWisconsinBiología Celular MicrobiologíaPhylogeneticsDCR1PatagoniaGeneticseducationDNA FungalMycological Typing TechniquesEcology Evolution Behavior and SystematicsPhylogenyGenetic diversityeducation.field_of_studyPhylogenetic treeEcologyChimeragenetic rootsSaccharomyces eubayanusBeerGenetic VariationBayes TheoremHibridacióSaccharomyces pastorianusbiology.organism_classificationBiological EvolutionReticulate evolutionGenetics PopulationEvolutionary biologyHybridization Genetichuman activitiesCIENCIAS NATURALES Y EXACTASMLSTMultilocus Sequence Typing
researchProduct

Data from: Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids

2014

Reticulate evolution can be a major driver of diversification into new niches, especially in disturbed habitats and at the edges of ranges. Industrial fermentation strains of yeast provide a window into these processes, but progress has been hampered by a limited understanding of the natural diversity and distribution of Saccharomyces species and populations. For example, lager beer is brewed with Saccharomyces pastorianus, an alloploid hybrid of S. cerevisiae and S. eubayanus, a species only recently discovered in Patagonia, Argentina. Here we report that genetically diverse strains of S. eubayanus are readily isolated from Patagonia, demonstrating that the species is well established ther…

SpeciationFungiPopulation Genetics - EmpiricalArgentinaLife SciencesMicrobial BiologySheboyganSaccharomyces bayanusSaccharomyces uvarummedicine and health carePhylogeographySaccharomycesWisconsinPatagoniaSaccharomyces eubayanusMedicineHybridizationhuman activitiesSaccharomyces pastorianus
researchProduct