0000000001313993
AUTHOR
Graziella Bongioni
Additional file 4 of The genetic heritage of Alpine local cattle breeds using genomic SNP data
Additional file 4: Table S2. Fixation indices (FST) between all pairs of breed populations analyzed in this study.
Additional file 1 of The genetic heritage of Alpine local cattle breeds using genomic SNP data
Additional file 1: Table S1. Name of the breeds, sample size, breed codes and source of genotyping data.
The genetic heritage of Alpine local cattle breeds using genomic SNP data
Abstract Background Assessment of genetic diversity and population structure provides important control metrics to avoid genetic erosion, inbreeding depression and crossbreeding between exotic and locally-adapted cattle breeds since these events can have deleterious consequences and eventually lead to extinction. Historically, the Alpine Arc represents an important pocket of cattle biodiversity with a large number of autochthonous breeds that provide a fundamental source of income for the entire regional economy. By using genotype data from medium-density single nucleotide polymorphism (SNP) arrays, we performed a genome-wide comparative study of 23 cattle populations from the Alpine Arc an…
Additional file 3 of The genetic heritage of Alpine local cattle breeds using genomic SNP data
Additional file 3: Figure S2. Admixture analysis plot in a circular fashion with all values of K (number of clusters) ranging from 2 to 28.
Additional file 5 of The genetic heritage of Alpine local cattle breeds using genomic SNP data
Additional file 5: Figure S3. Increment in the log likelihood for all tested migration events calculated by using the optM function in the R package OptM.
Additional file 2 of The genetic heritage of Alpine local cattle breeds using genomic SNP data
Additional file 2: Figure S1. Cross-validation plot of admixture analysis for all values of K (number of clusters) ranging from 2 to 28.