0000000001321309

AUTHOR

Stefania Vai

showing 10 related works from this author

The Arrival of Steppe and Iranian Related Ancestry in the Islands of the Western Mediterranean

2019

A series of studies have documented how Steppe pastoralist-related ancestry reached central Europe by at least 2500 BCE, while Iranian farmer-related ancestry was present in Aegean Europe by at least 1900 BCE. However, the spread of these ancestries into the western Mediterranean where they have contributed to many populations living today remains poorly understood. We generated genome-wide ancient DNA from the Balearic Islands, Sicily, and Sardinia, increasing the number of individuals with reported data from these islands from 3 to 52. We obtained data from the oldest skeleton excavated from the Balearic islands (dating to ∼2400 BCE), and show that this individual had substantial Steppe p…

Mediterranean climate0303 health sciencesBalearic islandsgeographygeography.geographical_feature_categorySteppemedia_common.quotation_subjectImmigrationPastoralismgovernment.political_districtAncient historyhumanities03 medical and health sciences0302 clinical medicineAncient DNABronze AgeClassical periodgovernment030217 neurology & neurosurgery030304 developmental biologymedia_common
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More data on ancient human mitogenome variability in Italy: new mitochondrial genome sequences from three Upper Palaeolithic burials.

2021

BACKGROUND: Recently, the study of mitochondrial variability in ancient humans has allowed the definition of population dynamics that characterised Europe in the Late Pleistocene and Early Holocene. Despite the abundance of sites and skeletal remains few data are available for Italy. - AIM: We reconstructed the mitochondrial genomes of three Upper Palaeolithic individuals for some of the most important Italian archaeological contexts: Paglicci (South-Eastern Italy), San Teodoro (South-Western Italy) and Arene Candide (North-Western Italy) caves. - SUBJECTS AND METHODS We explored the phylogenetic relationships of the three mitogenomes in the context of Western Eurasian ancient and modern va…

Mitochondrial DNA; ancient DNA; Upper Palaeolithic; Italian huntergatherers; LGMAgingMitochondrial DNAPleistocenePhysiologyEpidemiologyLineage (evolution)PopulationItalian huntergatherersContext (language use)Settore BIO/08 - AntropologiaCaveGeneticsHumansDNA Ancienteducationancient DNAHolocenegeographyeducation.field_of_studygeography.geographical_feature_categoryGenome HumanPublic Health Environmental and Occupational HealthUpper PalaeolithicLGMMitochondrial DNAAncient DNAArchaeologyItalyItalian hunter-gatherersEvolutionary biologyGenome MitochondrialAnnals of human biology
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Maternal DNA lineages at the gate of Europe in the 10th century AD

2018

Given the paucity of archaeogenetic data available for medieval European populations in comparison to other historical periods, the genetic landscape of this age appears as a puzzle of dispersed, small, known pieces. In particular, Southeastern Europe has been scarcely investigated to date. In this paper, we report the study of mitochondrial DNA in 10th century AD human samples from Capidava necropolis, located in Dobruja (Southeastern Romania, Southeastern Europe). This geographical region is particularly interesting because of the extensive population flux following diverse migration routes, and the complex interactions between distinct population groups during the medieval period. We suc…

0301 basic medicineEuropean PeopleremainsHeredityPopulation geneticslcsh:Medicinepopulation030105 genetics & heredityBiochemistryHaplogroupGeographical Locationscontaminationmitochondrial-dnaEthnicitieslcsh:SciencePhylogenymtDNA control regionPrincipal Component Analysiseducation.field_of_studyMultidisciplinaryGeographyHigh-Throughput Nucleotide SequencingPaleogeneticscontrol regionMitochondrial DNAEuropeNucleic acidsGenetic MappingPhylogeographyGeographyArchaeologyBiogeographyRomanian PeopleGenetic structurehistoryResearch ArticleMitochondrial DNAancient DNA mitochondrial DNA population genetics Romania Capidava medieval necropolisForms of DNAPopulationNear-EasternDNA MitochondrialBone and BonesWhite Peoplediversity03 medical and health sciencesgenetic affinitiesGeneticsHumanseducationEvolutionary BiologyBiology and life sciencesPopulation BiologyRomaniaEcology and Environmental Scienceslcsh:RPaleontologySequence Analysis DNADNAsequenceHistory MedievalPhylogeographyGenetics Population030104 developmental biologyHaplotypesEvolutionary biologyPeople and PlacesEarth SciencesHaplogroupsPopulation Groupingslcsh:QPaleogeneticsPopulation Genetics
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Genetic structure and differentiation from early bronze age in the mediterranean island of sicily: Insights from ancient mitochondrial genomes

2022

Sicily is one of the main islands of the Mediterranean Sea, and it is characterized by a variety of archaeological records, material culture and traditions, reflecting the history of migrations and populations’ interaction since its first colonization, during the Paleolithic. These deep and complex demographic and cultural dynamics should have affected the genomic landscape of Sicily at different levels; however, the relative impact of these migrations on the genomic structure and differentiation within the island remains largely unknown. The available Sicilian modern genetic data gave a picture of the current genetic structure, but the paucity of ancient data did not allow so far to make p…

ANCIENT DNA mitochondrial genomes genetic structure coalescent simulations approximate bayesian computationa DNA Sicily Mediterranean Early Bronze Age MotyaMediterraneanSettore BIO/08 - AntropologiaMotyacoalescent simulationsmitochondrial genomesGeneticsEarly Bronze Agegenetic structureMolecular MedicineANCIENT DNAa DNASicilyGenetics (clinical)approximate bayesian computation
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The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean

2020

Steppe-pastoralist-related ancestry reached Central Europe by at least 2500 bc, whereas Iranian farmer-related ancestry was present in Aegean Europe by at least 1900 bc. However, the spread of these ancestries into the western Mediterranean, where they have contributed to many populations that live today, remains poorly understood. Here, we generated genome-wide ancient-DNA data from the Balearic Islands, Sicily and Sardinia, increasing the number of individuals with reported data from 5 to 66. The oldest individual from the Balearic Islands (~2400 bc) carried ancestry from steppe pastoralists that probably derived from west-to-east migration from Iberia, although two later Balearic individ…

0301 basic medicineMediterranean climateSteppePastoralismPopulation geneticsgovernment.political_districtSettore BIO/08 - AntropologiaIranancient-DNA western mediterranean islands populationaDNA Human Ancient migrations Western Mediterranean Basin Steppe pastoralists Anthropology03 medical and health sciences0302 clinical medicineBronze AgeHumansDNA AncientSicilyEcology Evolution Behavior and SystematicsIslandsBalearic islandsgeography.geographical_feature_categoryEcologyAfrica; anthropology; emigration and immigration; Europe; humans; Iran; islands; Sicily; Spain; agriculture; DNA ancient; genome-wide association studyancientAgricultureDNAChalcolithicEmigration and Immigrationwestern mediterranean islands populationhumanitiesEuropeAncient DNA ; steppe ancestry ; western Mediterranean030104 developmental biologyAncient DNAGeographySpainAnthropologyAfricagovernmentancient-DNAEthnology030217 neurology & neurosurgeryGenome-Wide Association Study
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Palaeogenomics of Upper Palaeolithic to Neolithic European hunter-gatherers

2023

Acknowledgements: The authors thank G. Marciani and O. Jöris for comments on archaeology; C. Jeong, M. Spyrou and K. Prüfer for comments on genetics; M. O’Reilly for graphical support for Fig. 5 and Extended Data Fig. 9; the entire IT and laboratory teams at the Department of Archaeogenetics of MPI-SHH for technical assistance; M. Meyer and S. Nagel for support with single-stranded library preparation; K. Post, P. van Es, J. Glimmerveen, M. Medendorp, M. Sier, S. Dikstra, M. Dikstra, R. van Eerden, D. Duineveld and A. Hoekman for providing access to human specimens from the North Sea (The Netherlands); M. D. Garralda and A. Estalrrich for providing access to human specimens from La Riera (S…

HistoryAncient dnaInteractionsCave/45/23AdmixtureSettore BIO/08 - Antropologia/631/208/457/631/181/276160 Other humanitiesContaminationHumansHuntingPalaeogenomicsPopulation-structureArchaeology ; Biological anthropology ; Evolutionary genetics ; Population geneticsHistory AncientHuman evolutionDiversityOccupationMultidisciplinary/45Genome HumanarticlePaleontologyLast glacial maximumHuman GeneticsGene PoolGenomics/631/181/19/2471PleistoceneEuropeGenomic transformationsArchaeology/631/181/2474AnthropologyHunter-gatherersGenome sequence
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The genomic history of Southern Europe

2018

Farming was first introduced to southeastern Europe in the mid-7th millennium BCE - brought by migrants from Anatolia who settled in the region before spreading throughout Europe. However, the dynamics of the interaction between the first farmers and the indigenous hunter-gatherers remain poorly understood because of the near absence of ancient DNA from the region. We report new genome-wide ancient DNA data from 204 individuals-65 Paleolithic and Mesolithic, 93 Neolithic, and 46 Copper, Bronze and Iron Age-who lived in southeastern Europe and surrounding regions between about 12,000 and 500 BCE. We document that the hunter-gatherer populations of southeastern Europe, the Baltic, and the Nor…

0301 basic medicineMaleHistorySteppe01 natural sciencesgenome wide ancient DNA0302 clinical medicinepopulation dynamicsComputingMilieux_MISCELLANEOUSHistory Ancient2. Zero hunger0303 health scienceseducation.field_of_studyMultidisciplinarygeography.geographical_feature_categoryFarmersGenomeAgricultureCline (biology)GenomicsGrasslandEuropeGeographyWestern europeEthnologyFemalesoutheastern EuropeHumanArchaeogenetics010506 paleontologyAsia[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and PrehistoryHuman MigrationPopulationPopulationSettore BIO/08 - AntropologiaIndigenousArticleAncient03 medical and health sciencesgenetic variation ; genomics ; prehistoric Europe ; prehistoric archeology ; bioarchaeologyBioarchaeologygenomicsGeneticsHumansHUMANISTIC SCIENCES. Archeology.FarmerDNA AncientSex DistributioneducationMesolithic030304 developmental biology0105 earth and related environmental sciencesHUMANISTIČKE ZNANOSTI. Arheologija.Extramuralbusiness.industryGenome HumanAmbientaleDNAArchaeologyPRIRODNE ZNANOSTI. Biologija. Genetika evolucija i filogenija.genome wide ancient DNA; southeastern Europe; population dynamics030104 developmental biologyAncient DNAGenetics PopulationAgriculturegenetic variationAgriculture; Asia; DNA Ancient; Europe; Farmers; Female; Genetics Population; Genome Human; Grassland; History Ancient; Human Migration; Humans; Male; Sex Distribution; GenomicsAncient DNA Genomics Southeastern Europe Genetic VariationbusinessNATURAL SCIENCES. Biology. Genetics Evolution and Phylogenetics.030217 neurology & neurosurgery
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The diverse genetic origins of a Classical period Greek army.

2022

Trade and colonization caused an unprecedented increase in Mediterranean human mobility in the first millennium BCE. Often seen as a dividing force, warfare is in fact another catalyst of culture contact. We provide insight into the demographic dynamics of ancient warfare by reporting genome-wide data from fifth-century soldiers who fought for the army of the Greek Sicilian colony of Himera, along with representatives of the civilian population, nearby indigenous settlements, and 96 present-day individuals from Italy and Greece. Unlike the rest of the sample, many soldiers had ancestral origins in northern Europe, the Steppe, and the Caucasus. Integrating genetic, archaeological, isotopic, …

EuropeWarfareMultidisciplinaryMilitary PersonnelArchaeologyGreeceClassical worldHumanshistorySettore BIO/08 - Antropologiaancient DNAancient warfareHistory AncientProceedings of the National Academy of Sciences of the United States of America
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New Insights Into Mitochondrial DNA Reconstruction and Variant Detection in Ancient Samples

2021

Ancient DNA (aDNA) studies are frequently focused on the analysis of the mitochondrial DNA (mtDNA), which is much more abundant than the nuclear genome, hence can be better retrieved from ancient remains. However, postmortem DNA damage and contamination make the data analysis difficult because of DNA fragmentation and nucleotide alterations. In this regard, the assessment of the heteroplasmic fraction in ancient mtDNA has always been considered an unachievable goal due to the complexity in distinguishing true endogenous variants from artifacts. We implemented and applied a computational pipeline for mtDNA analysis to a dataset of 30 ancient human samples from an Iron Age necropolis in Poliz…

Mitochondrial DNANuclear genelcsh:QH426-470DNA damagemitochondrial DNAComputational biologySettore BIO/08 - AntropologiaBiologyGenomeHeteroplasmyHaplogrouplcsh:Geneticsancient DNA mitochondrial DNA NUMTs heteroplasmy variant detection anthropologyAncient DNAancient DNA; heteroplasmy; mitochondrial DNA; NUMTs; variant detectionGeneticsMolecular MedicineDNA fragmentationheteroplasmyancient DNANUMTsvariant detectionGenetics (clinical)Original ResearchFrontiers in Genetics
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More data on ancient human mitogenome variability in Italy: new mitochondrial genome sequences from three Upper Palaeolithic burials

2021

Recently, the study of mitochondrial variability in ancient humans has allowed the definition of population dynamics that characterised Europe in the Late Pleistocene and Early Holocene. Despite the abundance of sites and skeletal remains few data are available for Italy. We reconstructed the mitochondrial genomes of three Upper Palaeolithic individuals for some of the most important Italian archaeological contexts: Paglicci (South-Eastern Italy), San Teodoro (South-Western Italy) and Arene Candide (North-Western Italy) caves. We explored the phylogenetic relationships of the three mitogenomes in the context of Western Eurasian ancient and modern variability. Paglicci 12 belongs to sub-hapl…

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