6533b820fe1ef96bd1279aaf

RESEARCH PRODUCT

Evidence for the implication of the histone code in building the genome structure

Kirti PrakashKirti PrakashDavid Fournier

subject

0301 basic medicineStatistics and ProbabilityComputational biologyGeneral Biochemistry Genetics and Molecular BiologyHistones03 medical and health scienceschemistry.chemical_compoundTranscription (biology)AnimalsHumansHistone codeNucleosome[PHYS]Physics [physics]biologyGenome HumanApplied MathematicsRobustness (evolution)General MedicineChromatinChromatinHistone Code030104 developmental biologyHistonechemistryModeling and Simulationbiology.proteinHuman genomeDNA

description

International audience; Histones are punctuated with small chemical modifications that alter their interaction with DNA. One attractive hypothesis stipulates that certain combinations of these histone modifications may function, alone or together, as a part of a predictive histone code to provide ground rules for chromatin folding. We consider four features that relate histone modifications to chromatin folding: charge neutralisation, molecular specificity, robustness and evolvability. Next, we present evidence for the association among different histone modifications at various levels of chromatin organisation and show how these relationships relate to function such as transcription, replication and cell division. Finally, we propose a model where the histone code can set critical checkpoints for chromatin to fold reversibly between different orders of the organisation in response to a biological stimulus.

https://doi.org/10.1016/j.biosystems.2017.11.005