Genetic Diversity of HIV-1 Non-B Strains in Sicily: Evidence of Intersubtype Recombinants by Sequence Analysis ofgag,pol, andenvGenes

6533b820fe1ef96bd127a450

RESEARCH PRODUCT

Genetic Diversity of HIV-1 Non-B Strains in Sicily: Evidence of Intersubtype Recombinants by Sequence Analysis ofgag,pol, andenvGenes

Salvatrice Mancuso Nino Romano Fabio Tramuto Alberto Firenze F Bonura Anna Maria Perna Vitale Francesco

subject

Adult Male SUBTYPE-A Sequence analysis Molecular Sequence Data Immunology Gene Products gag Gene Products pol HIV Infections Biology Settore MED/42 - Igiene Generale E Applicata Genetic recombination Genetic analysis CRF02-AG law.invention SUPERINFECTION ANTIRETROVIRAL THERAPY MOLECULAR EPIDEMIOLOGY law Virology Humans PHYLOGENETIC ANALYSIS Sicily Gene WEST-AFRICA Aged Recombination Genetic Genetics Genetic diversity COMPLEX Molecular epidemiology Strain (biology)Gene Products env Genetic Variation virus diseases Sequence Analysis DNA Middle Aged IMMUNODEFICIENCY-VIRUS TYPE-1 Virology Infectious Diseases HIV-1 CAMEROON Recombinant DNA Female

description

The molecular epidemiology of HIV-1 strains in Sicily (Italy) was phylogenetically investigated by the analysis of HIV-1 gag, pol, and env gene sequences from 11 HIV-1 non-B strains from 408 HIV-1-seropositive patients observed from September 2001 to August 2006. Sequences suggestive of recombination were further investigated by bootscanning analysis of various fragments. Overall, we identified several second-generation recombinant (SGRs) strains, which contained genetic material of CRF02_AG in at least one gene. Notably, three individuals were found to be infected with subsubtype A3, and one of them showed genetic recombination with subsubtype A4. The current study emphasizes the genetic analysis of gag, pol, and env genes as a powerful tool to trace the spread of complex HIV-1 recombinant forms, and highlight the genetic diversity of HIV-1 non-B strains in Italy.

year	journal	country	edition	language
2007-10-09	AIDS Research and Human Retroviruses

https://doi.org/10.1089/aid.2007.0031

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