6533b861fe1ef96bd12c4ffc
RESEARCH PRODUCT
SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files
Carlos LlorensJaume Pérez-sánchezAhmed Ibrahem HafezAhmed Ibrahem HafezAhmed Ibrahem HafezFrancisco J. RoigBeatriz SorianoTeun BoekhoutTeun BoekhoutAna MiguelRicardo FutamiFarnaz DaneshniaAmir ArastehfarAmir ArastehfarToni Gabaldónsubject
Statistics and ProbabilityInterface (Java)Sequence analysisComputer sciencePcr assayBiochemistryGenomeTranscriptome03 medical and health sciencesSequence Analysis ProteinMultiplex polymerase chain reactionHumansNucleotideAmino Acid SequenceMolecular Biology030304 developmental biologychemistry.chemical_classification0303 health sciencesGenomeInformation retrievalContig030302 biochemistry & molecular biologyChromosomeComputer Science ApplicationsComputational MathematicsComputingMethodologies_PATTERNRECOGNITIONComputational Theory and MathematicschemistryLine (text file)Primer (molecular biology)Sequence AnalysisSoftwareReference genomedescription
[Motivation]: Sequence analyses oriented to investigate specific features, patterns and functions of protein and DNA/RNA sequences usually require tools based on graphic interfaces whose main characteristic is their intuitiveness and interactivity with the user’s expertise, especially when curation or primer design tasks are required. However, interface-based tools usually pose certain computational limitations when managing large sequences or complex datasets, such as genome and transcriptome assemblies. Having these requirments in mind we have developed SeqEditor an interactive software tool for nucleotide and protein sequences’ analysis.
| year | journal | country | edition | language |
|---|---|---|---|---|
| 2021-06-01 |