6533b862fe1ef96bd12c6c83

RESEARCH PRODUCT

How molecular knots can pass through each other

Peter VirnauJonathan Tammo SiebertBenjamin Trefz

subject

Models MolecularMultidisciplinaryComputersPolymersChemistryFOS: Physical sciencesBiomolecules (q-bio.BM)DNACondensed Matter - Soft Condensed MatterMolecular physicsNanostructuresDiffusionMolecular dynamicsCrystallographyQuantitative Biology - BiomoleculesBiological Physics (physics.bio-ph)FOS: Biological sciencesPhysical SciencesNucleic Acid ConformationThermodynamicsSoft Condensed Matter (cond-mat.soft)Physics - Biological Physics

description

We propose a mechanism in which two molecular knots pass through each other and swap positions along a polymer strand. Associated free energy barriers in our simulations only amount to a few $k_{B}T$, which may enable the interchange of knots on a single DNA strand.

10.1073/pnas.1319376111http://arxiv.org/abs/1407.3157