Search results for " BIA"
showing 10 items of 529 documents
How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)
2022
Analysing multiple genomic regions while incorporating detection and qualification of discordance among regions has become standard for understanding phylogenetic relationships. In plants, which usually have comparatively large genomes, this is feasible by the combination of reduced-representation library (RRL) methods and high-throughput sequencing enabling the cost effective acquisition of genomic data for thousands of loci from hundreds of samples. One popular RRL method is RADseq. A major disadvantage of established RADseq approaches is the rather short fragment and sequencing range, leading to loci of little individual phylogenetic information. This issue hampers the application of coa…
Assessing sampling coverage of species distribution in biodiversity databases
2019
Abstract Aim Biodiversity databases are valuable resources for understanding plant species distributions and dynamics, but they may insufficiently represent the actual geographic distribution and climatic niches of species. Here we propose and test a method to assess sampling coverage of species distribution in biodiversity databases in geographic and climatic space. Location Europe. Methods Using a test selection of 808,794 vegetation plots from the European Vegetation Archive (EVA), we assessed the sampling coverage of 564 European vascular plant species across both their geographic ranges and realized climatic niches. Range maps from the Chorological Database Halle (CDH) were used as bac…
Population size and breeding performance of the Lanner Falcon Falco biarmicus in Sicily: conservation implications
2017
Capsule: We report a significant reduction in population size and breeding success for the Lanner Falcon Falco biarmicus in Sicily, its biggest stronghold in Europe, since the latest coordinated survey. Aims: To provide updated information on current population size of Lanner Falcon in Sicily and to compare breeding parameters with those obtained in previous studies. Methods: We performed an intensive coordinated field survey and literature review of breeding success parameters across the species range. Results: Overall, we monitored 126 territories throughout Sicily where the species had been reported in the last 15 years. Lanner Falcons were present only in 60 of them. Mean nest productiv…
Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria
2005
International audience; Most endosymbiotic bacteria have extremely reduced genomes, accelerated evolutionary rates, and strong AT base compositional bias thought to reflect reduced efficacy of selection and increased mutational pressure. Here, we present a comparative study of evolutionary forces shaping five fully sequenced bacterial endosymbionts of insects. The results of this study were three-fold: (i) Stronger conservation of high expression genes at not just nonsynonymous, but also synonymous, sites. (ii) Variation in amino acid usage strongly correlates with GC content and expression level of genes. This pattern is largely explained by greater conservation of high expression genes, l…
Breeding success of the Great Tit Parus major in relation to attributes of natural nest cavities in a primeval forest
2015
An overlap in attributes of nest cavities used by Great Tit Parus major across Eurasia suggests similar nest site preferences within the geographical range, although the drivers of these preferences are unclear. To determine whether preferred cavities provide conditions enhancing successful reproduction, we investigated the breeding performance of Great Tits in relation to tree cavity characteristics using data collected during 2008–2011 in primeval conditions (Białowieża National Park, Poland). Here, tree cavities are diverse and superabundant but nesting birds are at risk from a variety of predators. According to expectations, nest losses were high (60 % of Great Tit nests failed), mostly…
Climate and socio-economic factors explain differences between observed and expected naturalization patterns of European plants around the world
2021
Pouteau, R., et al.
Weak effects of geolocators on small birds: A meta-analysis controlled for phylogeny and publication bias
2020
Abstract Currently, the deployment of tracking devices is one of the most frequently used approaches to study movement ecology of birds. Recent miniaturization of light‐level geolocators enabled studying small bird species whose migratory patterns were widely unknown. However, geolocators may reduce vital rates in tagged birds and may bias obtained movement data. There is a need for a thorough assessment of the potential tag effects on small birds, as previous meta‐analyses did not evaluate unpublished data and impact of multiple life‐history traits, focused mainly on large species and the number of published studies tagging small birds has increased substantially. We quantitatively reviewe…
A new rationale for not picking low hanging fruits: The separation of ownership and control
2019
Recent attempts at explaining the energy-efficiency gap rely on considerations related to organizational and behavioral/cognitive failures. In this paper, we build on the strategic delegation literature to advance a complementary explanation. It is shown that strategic market interaction may encourage business owners to instill a bias against energy efficiency in managerial compensation contracts. Since managers respond to financial incentives, their decisions will reflect this bias, resulting in lack of investment.
Evolutionary Changes after Translational Challenges Imposed by Horizontal Gene Transfer
2019
International audience; Genes acquired by horizontal gene transfer (HGT) may provide the recipient organism with potentially new functions, but proper expression level and integration of the transferred genes in the novel environment are not granted. Notably, transferred genes can differ from the receiving genome in codon usage preferences, leading to impaired translation and reduced functionality. Here, we characterize the genomic and proteomic changes undergone during experimental evolution of Escherichia coli after HGT of three synonymous versions, presenting very different codon usage preference, of an antibiotic resistance gene. The experimental evolution was conducted with and without…
Social information use about novel aposematic prey is not influenced by a predator’s previous experience with toxins
2019
Aposematism is an effective antipredator strategy. However, the initial evolution and maintenance of aposematism are paradoxical because conspicuous prey are vulnerable to attack by naive predators. Consequently, the evolution of aposematic signal mimicry is also difficult to explain. The cost of conspicuousness can be reduced if predators learn about novel aposematic prey by observing another predator's response to that same prey. On the other hand, observing positive foraging events might also inform predators about the presence of undefended mimics, accelerating predation on both mimics and their defended models. It is currently unknown, however, how personal and social information combi…