Search results for " Homology"

showing 10 items of 633 documents

On spectra of geometric operators on open manifolds and differentiable groupoids

2001

We use a pseudodifferential calculus on differentiable groupoids to obtain new analytical results on geometric operators on certain noncompact Riemannian manifolds. The first step is to establish that the geometric operators belong to a pseudodifferential calculus on an associated differentiable groupoid. This then leads to Fredholmness criteria for geometric operators on suitable noncompact manifolds, as well as to an inductive procedure to compute their essential spectra. As an application, we answer a question of Melrose on the essential spectrum of the Laplace operator on manifolds with multicylindrical ends.

Discrete mathematicsPure mathematicsHigher-dimensional algebraMathematics::Operator AlgebrasGeneral MathematicsEssential spectrumMathematics::Spectral TheoryOperator theoryCompact operatorQuasinormal operatorMathematics::K-Theory and HomologyDouble groupoidMathematics::Differential GeometryDifferentiable functionMathematics::Symplectic GeometryLaplace operatorMathematicsElectronic Research Announcements of the American Mathematical Society
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Homotopy limits for 2-categories

2008

AbstractWe study homotopy limits for 2-categories using the theory of Quillen model categories. In order to do so, we establish the existence of projective and injective model structures on diagram 2-categories. Using these results, we describe the homotopical behaviour not only of conical limits but also of weighted limits. Finally, pseudo-limits are related to homotopy limits.

Discrete mathematicsPure mathematicsHomotopy lifting propertyHomotopy categoryGeneral MathematicsHomotopyHomotopiaQuillen adjunctionWhitehead theoremCofibrationMathematics::Algebraic Topologyn-connectedCategories (Matemàtica)Mathematics::K-Theory and HomologyHomotopy hypothesisMathematics::Category Theory512 - Àlgebra2-categories homotopy limits coherence conditionsMathematics
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Spectral invariance, ellipticity, and the Fredholm property for pseudodifferential operators on weighted Sobolev spaces

1992

The pseudodifferential operators with symbols in the Grushin classes \~S inf0 supρ,δ , 0 ≤ δ < ρ ≤ 1, of slowly varying symbols are shown to form spectrally invariant unital Frecher-*-algebras (Ψ*-algebras) in L(L 2(R n )) and in L(H γ st ) for weighted Sobolev spaces H infγ sup defined via a weight d function γ. In all cases, the Fredholm property of an operator can be characterized by uniform ellipticity of the symbol. This gives a converse to theorems of Grushin and Kumano-Ta-Taniguchi. Both, the spectrum and the Fredholm spectrum of an operator turn out to be independent of the choices of s, t and γ. The characterization of the Fredholm property by uniform ellipticity leads to an index …

Discrete mathematicsPure mathematicsParametrixFredholm integral equationCompact operatorFredholm theorySobolev spacesymbols.namesakeOperator (computer programming)Differential geometryMathematics::K-Theory and HomologysymbolsGeometry and TopologyAtiyah–Singer index theoremAnalysisMathematicsAnnals of Global Analysis and Geometry
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Identification of proteins and developmental expression of RNAs encoded by the 65A cuticle protein gene cluster in Drosophila melanogaster

1998

0965-1748 (Print) Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.; Proteins of the third instar larval cuticle of Drosophila melanogaster, LCP5-LCP9, were purified and their N-terminal sequences determined. Three of these proteins (LCP5, 6, and 8) were found to be encoded by two multicopy genes previously mapped to the gene cluster at 65A 5-6 on the left arm of the third chromosome. The analysis of the patterns of developmental expression of the 8 distinct genes at this site showed that all but two were expressed during larval life. The patterns fell into three groups: one where expression was all through larval life, one where expression was primar…

Drosophila melanogaster/*genetics/growth & developmentCuticleMolecular Sequence DataInsect Proteins/*genetics/isolation & purificationSequence HomologyGenes InsectLarva/genetics/growth & developmentBiochemistryGene clusterAnimalsDevelopmentalAmino Acid SequenceMolecular BiologyGeneGeneticsRegulation of gene expressionSequence Homology Amino AcidbiologyfungiGene Expression Regulation DevelopmentalChromosome Mappingbiology.organism_classificationAmino AcidDrosophila melanogasterGene Expression RegulationGenesLarvaMultigene FamilyInsect ScienceEcdysisRNA/*geneticsInsect ProteinsRNAInstarDrosophila melanogasterInsectOverlapping geneInsect Biochemistry and Molecular Biology
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CYP3 phylogenomics: evidence for positive selection of CYP3A4 and CYP3A7.

2008

CYP3A metabolizes 50% of currently prescribed drugs and is frequently involved in clinically relevant drug interactions. The understanding of roles and regulations of the individual CYP3A genes in pharmacology and physiology is incomplete.Using genomic sequences from 16 species we investigated the evolution of CYP3 genomic loci over a period of 450 million years.CYP3A genes in amniota evolved from two ancestral CYP3A genes. Upon the emergence of eutherian mammals, one of them was lost, whereas, the other acquired a novel genomic environment owing to translocation. In primates, CYP3A underwent rapid evolutionary changes involving multiple gene duplications, deletions, pseudogenizations, and …

DrugDNA Complementarymedia_common.quotation_subjectMolecular Sequence DataGenomicsBiologyCatalysisCytochrome P-450 Enzyme SystemSpecies SpecificityPhylogenomicsSequence Homology Nucleic AcidGeneticsAnimalsHumansGeneral Pharmacology Toxicology and PharmaceuticsMolecular BiologyGeneGenetics (clinical)CYP3A7media_commonComparative genomicsGeneticsCYP3A4Base SequenceGenomicsIsoenzymesMolecular MedicinePharmacogeneticsPharmacogenetics and genomics
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Identification of protein IT of the intestinal cytoskeleton as a novel type I cytokeratin with unusual properties and expression patterns.

1990

A major cytoskeletal polypeptide (Mr approximately 46,000; protein IT) of human intestinal epithelium was characterized by biochemical and immunological methods. The polypeptide, which was identified as a specific and genuine mRNA product by translation in vitro, reacted, in immunoblotting after SDS-PAGE, only with one of numerous cytokeratin (CK) antisera tested but with none of many monoclonal CK antibodies. In vitro, it formed heterotypic complexes with the type II CK 8, as shown by blot binding assays and gel electrophoresis in 4 M urea, and these complexes assembled into intermediate filaments (IFs) under appropriate conditions. A chymotrypsin-resistant Mr approximately 38,000 core fra…

DuodenumImmunoblottingMolecular Sequence DataBiologyPeptide MappingEpitheliumCytokeratinIntestinal mucosaSequence Homology Nucleic AcidKeratinProtein biosynthesisAnimalsHumansElectrophoresis Gel Two-DimensionalAmino Acid SequenceRNA MessengerIntestinal MucosaIntermediate filamentCytoskeletonPeptide sequenceCytoskeletonchemistry.chemical_classificationArticlesCell BiologyMolecular biologyRatsBlotCytoskeletal ProteinsMicroscopy ElectronBiochemistrychemistryProtein BiosynthesisKeratinsJournal of Cell Biology
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Reciprocal regulation of the human sterol regulatory element binding protein (SREBP)-1a promoter by Sp1 and EGR-1 transcription factors.

2007

AbstractSterol regulatory element binding protein (SREBP)-1a is a transcription factor that is highly expressed in actively growing cells, and is involved in the biosynthesis of cholesterol, fatty acids and phospholipids. We have mapped the minimal human SREBP-1a promoter region to 75bp upstream of the translation start site where we discovered a functional role for the 3 GC-boxes containing overlapping sites for the Sp1 and EGR-1 transcription factors. Intact SP1-binding sites are essential for promoter activity, whereas EGR-1 suppresses the transcription of the human SREBP-1a promoter. These results reveal a novel physiologically relevant transcriptional mechanism for the reciprocal regul…

Egr-1Chromatin ImmunoprecipitationSp1 Transcription FactorSREBP-1aResponse elementMolecular Sequence DataBiophysicsElectrophoretic Mobility Shift AssayBiologyBiochemistrySp1Cell LineUpstream activating sequenceStructural BiologyTranscription (biology)Sequence Homology Nucleic AcidGene expressionGeneticsHumansPromoter Regions GeneticMolecular BiologyTranscription factorGeneral transcription factorBase SequenceReverse Transcriptase Polymerase Chain ReactionPromoterPromoterCell BiologySterol regulatory element-binding proteinBiochemistryEarly Growth Response Transcription Factorslipids (amino acids peptides and proteins)Gene expressionSterol Regulatory Element Binding Protein 1FEBS letters
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Gene within gene configuration and expression of the Drosophila melanogaster genes lethal(2) neighbour of tid [l(2)not] and lethal(2) relative of tid…

1997

In this paper, we describe the structure and temporal expression pattern of the Drosophila melanogaster genes l(2)not and l(2)rot located at locus 59F5 vis a vis the tumor suppressor gene l(2)tid described previously and exhibiting a gene within gene configuration. The l(2)not protein coding region, 1530 nt, is divided into two exons by an intron, 2645 nt, harboring the genes l(2)rot, co-transcribed from the same DNA strand, and l(2)tid, co-transcribed from the opposite DNA strand, located vis a vis. To determine proteins encoded by the genes described in this study polyclonal rabbit antibodies (Ab), anti-Not and anti-Rot, were generated. Immunostaining of developmental Western blots with t…

Embryo NonmammalianTranscription GeneticMolecular Sequence DataRestriction MappingGenes Insectmacromolecular substancesBiologyMannosyltransferasesAntibodiesExonTranscription (biology)GeneticsAnimalsDrosophila ProteinsNorthern blotAmino Acid SequenceMicroscopy ImmunoelectronGeneBody PatterningRegulation of gene expressionBase SequenceSequence Homology Amino Acidtechnology industry and agricultureIntronRNAGene Expression Regulation DevelopmentalMembrane ProteinsGeneral MedicineExonsMolecular biologyIntronsPeptide FragmentsAntisense RNADrosophila melanogasterGene Expression RegulationInsect ProteinsRabbitsSequence AlignmentGene
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An organizing region in metamorphosing hydrozoan planula larvae--stimulation of axis formation in both larval and in adult tissue.

2010

A novel wingless gene was isolated from the marine colonial hydroid Hydractinia echinata. Alignments and Bayesian inference analysis clearly assign the gene to the Wnt5A group. In line with data found for the brachyury ortholog of Hydractinia, He-wnt5A is expressed during metamorphosis in the posterior tip of the spindle-shaped planula larva, suggesting that the tip functions as a putative organizer during metamorphosis. Additionally, the outermost cells of the posterior tip are omitted from apoptosis during metamorphosis. In order to investigate this putative organizer function, we transplanted the posterior tip of metamorphosing animals into non-induced larvae and into primary polyps 24 h…

EmbryologyBrachyuryanimal structuresTime Factorsmedia_common.quotation_subjectMolecular Sequence DataApoptosisModels BiologicalHydractinia echinataHydractiniaIn Situ Nick-End LabelingAnimalsAmino Acid SequenceMetamorphosisPlanulaIn Situ HybridizationPhylogenymedia_commonBody PatterningRegulation of gene expressionLarvabiologySequence Homology Amino AcidfungiMetamorphosis BiologicalGene Expression Regulation DevelopmentalAnatomybiology.organism_classificationCell biologyWnt ProteinsHydrozoaLarvaHydroid (zoology)Tissue TransplantationDevelopmental BiologyThe International journal of developmental biology
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saliva, a new Drosophila gene expressed in the embryonic salivary glands with homologues in plants and vertebrates.

1998

saliva (slv) transcription begins at the salivary gland placodes and continues on throughout development as salivary glands invaginate and reach their final location and morphology. saliva is located cytogenetically in 76A/B, and encodes a 226-amino-acid protein with four hydrophobic domains. A Northern blot detects a 1.6-kb transcript throughout development. Database similarity searches reveal homology to proteins from Caenorhabditis, Lilium, Medicago and mouse.

EmbryologySalivaDNA ComplementaryEmbryo NonmammalianDNA PlantMolecular Sequence DataGenes InsectGenes PlantHomology (biology)Salivary Glandsstomatognathic systemmedicineAnimalsDrosophila ProteinsNorthern blotAmino Acid SequenceSalivary Proteins and PeptidesGeneIn Situ HybridizationbiologySalivary glandSequence Homology Amino AcidGene Expression Regulation DevelopmentalSequence Analysis DNAPlantsbiology.organism_classificationMolecular biologyCaenorhabditismedicine.anatomical_structureDrosophila melanogasterVertebratesDrosophila melanogasterSequence AlignmentDrosophila ProteinDevelopmental BiologyMechanisms of development
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