Search results for " Indexing"
showing 10 items of 88 documents
Languages with mismatches
2007
AbstractIn this paper we study some combinatorial properties of a class of languages that represent sets of words occurring in a text S up to some errors. More precisely, we consider sets of words that occur in a text S with k mismatches in any window of size r. The study of this class of languages mainly focuses both on a parameter, called repetition index, and on the set of the minimal forbidden words of the language of factors of S with errors. The repetition index of a string S is defined as the smallest integer such that all strings of this length occur at most in a unique position of the text S up to errors. We prove that there is a strong relation between the repetition index of S an…
"Indexing structures for approximate string matching
2003
In this paper we give the first, to our knowledge, structures and corresponding algorithms for approximate indexing, by considering the Hamming distance, having the following properties. i) Their size is linear times a polylog of the size of the text on average. ii) For each pattern x, the time spent by our algorithms for finding the list occ(x) of all occurrences of a pattern x in the text, up to a certain distance, is proportional on average to |x| + |occ(x)|, under an additional but realistic hypothesis.
Linear-size suffix tries
2016
Suffix trees are highly regarded data structures for text indexing and string algorithms [MCreight 76, Weiner 73]. For any given string w of length n = | w | , a suffix tree for w takes O ( n ) nodes and links. It is often presented as a compacted version of a suffix trie for w, where the latter is the trie (or digital search tree) built on the suffixes of w. Here the compaction process replaces each maximal chain of unary nodes with a single arc. For this, the suffix tree requires that the labels of its arcs are substrings encoded as pointers to w (or equivalent information). On the contrary, the arcs of the suffix trie are labeled by single symbols but there can be Θ ( n 2 ) nodes and lin…
Creating a semantically-enhanced cloud services environment through ontology evolution
2014
Currently, the availability of Web resources has grown enormously to the point that whatever a user needs at a given moment can potentially be found on the Internet. These resources are not limited to data items anymore, functionality delivered through some sort of service architectural model is also offered on the Internet. In the last few years, cloud computing has emerged as one of the most popular computing models to provide services over the Internet. However, as the number of available cloud services increases, the problem of service discovery and selection arises. Experience indicates that semantic technologies can provide the basis for enhanced and more precise search processes. In …
Indexing a sequence for mapping reads with a single mismatch
2014
Mapping reads against a genome sequence is an interesting and useful problem in computational molecular biology and bioinformatics. In this paper, we focus on the problem of indexing a sequence for mapping reads with a single mismatch. We first focus on a simpler problem where the length of the pattern is given beforehand during the data structure construction. This version of the problem is interesting in its own right in the context of the next generation sequencing. In the sequel, we show how to solve the more general problem. In both cases, our algorithm can construct an efficient data structure in time and space and can answer subsequent queries in time. Here, n is the length of the s…
The indexing of persons in news sequences using audio-visual data
2004
We describe a video indexing system that automatically searches for a specific person in a news sequence. The proposed approach combines audio and video confidence values extracted from speaker and face recognition analysis. The system also incorporates a shot selection module that seeks for anchors, where the person on the scene is likely speaking. The system has been extensively tested on several news sequences with very good recognition rates.
Reverse-Safe Text Indexing
2021
We introduce the notion of reverse-safe data structures. These are data structures that prevent the reconstruction of the data they encode (i.e., they cannot be easily reversed). A data structure D is called z - reverse-safe when there exist at least z datasets with the same set of answers as the ones stored by D . The main challenge is to ensure that D stores as many answers to useful queries as possible, is constructed efficiently, and has size close to the size of the original dataset it encodes. Given a text of length n and an integer z , we propose an algorithm that constructs a z -reverse-safe data structure ( z -RSDS) that has size O(n) and answers decision and counting pattern matc…
Suitability of a content-based retrieval method in astronomical image databases
1996
Abstract Indexing and retrieval methods based on the image content are required to effectively use information from large repositories of digital images. Usually, the way to search for data and images in astronomical archives is via textual queries expressed in terms of constraints on observation parameters. In this paper we present a method for automatic extraction of images by using shape descriptions based on local symmetry. The proposed indexing methodology has been developed and tested inside JACOB, a prototypal system for content-based video database querying.
A robust blind 3-D mesh watermarking based on wavelet transform for copyright protection
2019
Nowadays, three-dimensional meshes have been extensively used in several applications such as, industrial, medical, computer-aided design (CAD) and entertainment due to the processing capability improvement of computers and the development of the network infrastructure. Unfortunately, like digital images and videos, 3-D meshes can be easily modified, duplicated and redistributed by unauthorized users. Digital watermarking came up while trying to solve this problem. In this paper, we propose a blind robust watermarking scheme for three-dimensional semiregular meshes for Copyright protection. The watermark is embedded by modifying the norm of the wavelet coefficient vectors associated with th…
Novel Results on the Number of Runs of the Burrows-Wheeler-Transform
2021
The Burrows-Wheeler-Transform (BWT), a reversible string transformation, is one of the fundamental components of many current data structures in string processing. It is central in data compression, as well as in efficient query algorithms for sequence data, such as webpages, genomic and other biological sequences, or indeed any textual data. The BWT lends itself well to compression because its number of equal-letter-runs (usually referred to as $r$) is often considerably lower than that of the original string; in particular, it is well suited for strings with many repeated factors. In fact, much attention has been paid to the $r$ parameter as measure of repetitiveness, especially to evalua…