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A molecular electron density theory study of the chemo- and regioselective [3 + 2] cycloaddition reactions between trifluoroacetonitrile N-oxide and …

2018

Abstract The [3 + 2] cycloaddition (32CA) reaction between trifluoroacetonitrile N-oxide (NO 7) and 2,2,4,4-tetramethyl-3-thioxocyclobutan-1-one (THK 12) as well as the self-dimerization of NO 7 as a competitive pathway were studied within the Molecular Electron Density Theory (MEDT) using several DFT functionals together with def2-TZVP basis set. Taking CCSD(T)/TZVP activation energies as reference, among the employed functionals, just the B2PLYP-D3(BJ) one is able to portray complete predominance of 32CA reaction over self-dimerization process in excellent agreement with the experimental outcomes. Analysis of the global reactivity indices permits to characterize NO 7 and THK 12 as a stron…

Electron density010405 organic chemistryChemistryGeneral Physics and AstronomyRegioselectivity010402 general chemistry01 natural sciencesElectron localization functionCycloaddition0104 chemical sciencesNucleophileComputational chemistryElectrophileReactivity (chemistry)Physical and Theoretical ChemistryBasis setChemical Physics
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A molecular electron density theory study of the Lewis acid–catalyzed decomposition reaction of nitroethyl benzoate using aluminum derivatives

2019

Electron densityChemistryAluminiumOrganic ChemistryPolymer chemistrychemistry.chemical_elementLewis acids and basesPhysical and Theoretical ChemistryChemical decompositionElectron localization functionCatalysisLewis acid catalysisJournal of Physical Organic Chemistry
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The structural aspects of the transformation of 3-nitroisoxazoline-2-oxide to 1-aza-2,8-dioxabicyclo[3.3.0]octane derivatives: Experimental and MEDT …

2019

Abstract Reaction of 3-nitroisoxazoline-2-oxide with monosubstituted ethenes, first time documented fifty years ago, have been reviewed. Structures of phenyl and cyano derivatives of 1-aza-2,8-dioxabicyclo[3.3.0]octane produced in [3 + 2] cycloaddition (32CA) between styrene and acrylonitrile with 3-nitroisoxazoline-2-oxide were determined through single crystal XRD analysis. The molecular mechanism of the title 32CA has been also analyzed within the Molecular Electron Density Theory (MEDT) based on the M06-2X(PCM)/6-311 + G(d,p) calculations.

Electron densityElectron localization functionChemistryOrganic ChemistryOxide(3+2) cycloadditionCycloadditionElectron localization functionMolecular electron density theoryAnalytical ChemistryStyreneInorganic Chemistrychemistry.chemical_compoundPhysical chemistryAcrylonitrile3-nitroisoxazoline-2-oxideSingle crystalSpectroscopyXRD analysisOctaneJournal of Molecular Structure
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The nature of inter- and intramolecular interactions in F2OXe…HX (X= F, Cl, Br, I) complexes

2015

Electronic structure of the XeOF2 molecule and its two complexes with HX (X= F, Cl, Br, I) molecules have been studied in the gas phase using quantum chemical topology methods: topological analysis of electron localization function (ELF), electron density, ρ(r), reduced gradient of electron density |RDG(r)| in real space, and symmetry adapted perturbation theory (SAPT) in the Hilbert space. The wave function has been approximated by the MP2 and DFT methods, using APF-D, B3LYP, M062X, and B2PLYP functionals, with the dispersion correction as proposed by Grimme (GD3). For the Xe-F and Xe=O bonds in the isolated XeOF2 molecule, the bonding ELF-localization basins have not been observed. Accord…

Electron densityQuantum chemical topologyXenonksenonElectronic structure010402 general chemistrynoble gas complexes01 natural sciencesCatalysisNoble gas complexesInorganic ChemistryComputational chemistry0103 physical sciencesMoleculePhysical and Theoretical ChemistryTopology (chemistry)Original Paper010304 chemical physicsSAPTHydrogen bondChemistryOrganic ChemistryElectron localization function0104 chemical sciencesComputer Science ApplicationsCrystallographyELFComputational Theory and MathematicsCovalent bondIntramolecular forcequantum chemical topology
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A molecular electron density theory study for [3 + 2] cycloaddition reactions of 1‐pyrroline ‐1‐oxide with disubstituted acetylenes leading to bicycl…

2020

Electron densitychemistry.chemical_compoundMaterials sciencechemistryBicyclic moleculeOxidePyrrolinePhysical and Theoretical ChemistryCondensed Matter PhysicsMedicinal chemistryAtomic and Molecular Physics and OpticsElectron localization functionCycloadditionInternational Journal of Quantum Chemistry
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Molecular Electron Density Theory: A Modern View of Reactivity in Organic Chemistry

2016

A new theory for the study of the reactivity in Organic Chemistry, named Molecular Electron Density Theory (MEDT), is proposed herein. MEDT is based on the idea that while the electron density distribution at the ground state is responsible for physical and chemical molecular properties, as proposed by the Density Functional Theory (DFT), the capability for changes in electron density is responsible for molecular reactivity. Within MEDT, the reactivity in Organic Chemistry is studied through a rigorous quantum chemical analysis of the changes of the electron density as well as the energies associated with these changes along the reaction path in order to understand experimental outcomes. St…

Electron densitymolecular mechanismsChemistry OrganicPharmaceutical ScienceElectronsElectron010402 general chemistry01 natural sciencesArticleAnalytical Chemistrylcsh:QD241-441Electron density distributionlcsh:Organic chemistryComputational chemistryDrug DiscoveryDFT reactivity indicesNon-covalent interactionsOrganic chemistryReactivity (chemistry)Physical and Theoretical Chemistryelectron densityQuantum chemicalchemistry.chemical_classification010405 organic chemistryOrganic Chemistrymolecular electron density theory0104 chemical scienceschemistrynon-covalent interactionsModels ChemicalChemistry (miscellaneous)molecular electron density theory; DFT reactivity indices; electron localisation function; non-covalent interactions; electron density; molecular mechanisms; chemical reactivityMolecular MedicineDensity functional theoryGround stateelectron localisation functionchemical reactivityMolecules; Volume 21; Issue 10; Pages: 1319
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Theoretical study on the molecular mechanism of the [5 + 2] vs. [4 + 2] cyclization mediated by Lewis acid in the quinone system

2013

[EN] The thermal and Lewis acid (LA) catalyzed cyclizations of quinone 1 involved in the synthesis of Colombiasin A and Elipsaterosin B have been theoretically studied using DFT methods at the B3LYP/6-311G(d,p) computational level. B3LYP calculations suggest that the formal endo [4 + 2] cycloadduct allowing the synthesis of Colombiasin A is preferentially formed under thermal conditions, while in the presence of the BF3 LA catalyst the formal [5 + 2] cycloadduct is seen, allowing the synthesis of Elipsaterosin B. The BF3 LA catalyst not only accelerates the nucleophilic attack on the C2 carbon of the quinone framework through a more polar C-C bond formation, but also provokes a different el…

Electron localization functionChemistryStereochemistryOrganic ChemistryCycloaddition reactionBiochemistryCatalysisQuinoneNucleophileDiels-alder reactionIntramolecular forceElf analysis(-) Elisapterosin-BElectrophilePolarizable continuum modelSingle bondLewis acids and bases(-) Colombiasin-APhysical and Theoretical ChemistryTopological analysisBond formationDiels–Alder reactionOrganic & Biomolecular Chemistry
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Understanding the regioselectivity in hetero Diels–Alder reactions. An ELF analysis of the reaction between nitrosoethylene and 1-vinylpyrrolidine

2013

[EN] The regioselectivity in the hetero Diels-Alder reaction between nitrosoethylene 1 and 1-vinylpyrrolidine 2 has been studied by a comparative ELF bonding analysis along the IRC of the endo/ortho and endo/meta regioisomeric channels at the B3LYP/6-31G*. level. Along the most favorable endo/ortho regioisomeric channel, the C-C sigma bond is first formed by coupling of two pseudoradical centers located at the most electrophilic carbon of 1 and the most nucleophilic center of 2. Formation of these relevant pseudoradical centers, which depend on the total charge transfer process along the polar reaction, and not on the approach mode of each reagent, is well characterized by analysis of the a…

Electron localization functionParameterChemistryOrganic ChemistryDensityRegioselectivityPhotochemistryCycloaddition reactionBiochemistryBond-formationElectron localization functionIndexIonNucleophileRadical ionReagentDrug DiscoveryElectrophileDiels alderQuantitative characterizationElectrophilicityTopological analysis13-DipolarTetrahedron
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Energetics of hydride and electron pair attachment to EX30/+ (E=B, C, Al, Si and X=F, Cl, Br, I) and the study of bonding trends among EX30/+, EX32−/…

2004

Abstract A theoretical gas-phase “ligand-free” or “electron pair affinity” (EPA) approach, based on CCSD(T)/(SDB-)cc-pVTZ//MP2/(SDB-)cc-pVTZ electronic structure calculations, is introduced as a possible means for determining Lewis acidity trends among planar EX30/+ (E = B, C, Al, Si; X = F, Cl, Br, I) species. In this treatment, the free electron pair is considered to be an extreme Lewis base. The calculated EPA values are compared with experimental Lewis acidities, previously calculated fluoride ion affinity (FIA) and hydride ion affinity (HA) trends, and are found to exhibit reasonable correlations in all cases. The bonding in the planar and trigonal pyramidal conformations of EX30/+ and…

Electron pairHydrideChemistryOrganic ChemistryTrigonal pyramidal molecular geometryCrystal structureBiochemistryElectron localization functionInorganic ChemistryCrystallographyComputational chemistryEnvironmental ChemistryC/ALLewis acids and basesPhysical and Theoretical ChemistrycomputerNatural bond orbitalcomputer.programming_languageJournal of Fluorine Chemistry
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Nature of the ring-closure process along the rearrangement of octa-1,3,5,7-tetraene to cycloocta-1,3,5-triene from the perspective of the electron lo…

2011

We analyze the behavior of the energy profile of the ring-closure process for the transformation of (3Z,5Z)-octa-1,3,5,7-tetraene 5 to (1Z,3Z,5Z)-cycloocta-1,3,5-triene 6 through a combination of electron localization function (ELF) and catastrophe theory (CT). From this analysis, concepts such as bond breaking/forming processes, formation/annihilation of lone pairs, and other electron pair rearrangements arise naturally through the reaction progress simply in terms of the different ways of pairing up the electrons. A relationship between the topology and the nature of the bond breaking/forming processes along this rearrangement is reported. The different domains of structural stability of …

Electron paireducation.field_of_studyElectron localization functionRing-closure processElectrocyclic reactionsChemistryStereochemistryCatastrophe theoryPopulationGeneral ChemistryCyclooctatrieneElectron localization functionLewis structureComputational Mathematicssymbols.namesakeCrystallographyEnergy profileChemical bondsymbolsSingle bondChemical bondOctatetraeneeducationLone pairJournal of Computational Chemistry
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