Search results for " Methods"
showing 10 items of 4102 documents
Using Applications and Tools to Visualize ab initio Calculations Performed in VASP
2018
Visualization of the results of the ab initio calculations is important for the analysis of these results. It improves the quality of the analysis by supplementing the plain numbers received as the output of the calculations with various graphical images and facilitates the analysis of the results. In addition to that visualization helps avoiding some mistakes or inconsistencies. Various tools have been used in this work to construct the unit cell models of the calculated lattices, to check and analyze the calculated lattice structure before and after the relaxation, to plot total and difference electron charge density maps.
Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples.
2013
Flow cytometry is the prototypical assay for multi-parameter single cell analysis, and is essential in vaccine and biomarker research for the enumeration of antigen-specific lymphocytes that are often found in extremely low frequencies (0.1% or less). Standard analysis of flow cytometry data relies on visual identification of cell subsets by experts, a process that is subjective and often difficult to reproduce. An alternative and more objective approach is the use of statistical models to identify cell subsets of interest in an automated fashion. Two specific challenges for automated analysis are to detect extremely low frequency event subsets without biasing the estimate by pre-processing…
Errors Arising in Computer Simulation Methods
2014
The goal of this introductory chapter is to discuss in general terms different classes of errors arising in computer simulation methods and to direct the reader to the chapters and sections of the book where these errors are analyzed. Moreover, we describe the error estimation methodology applied in this book.
Highlighting numerical insights of an efficient SPH method
2018
Abstract In this paper we focus on two sources of enhancement in accuracy and computational demanding in approximating a function and its derivatives by means of the Smoothed Particle Hydrodynamics method. The approximating power of the standard method is perceived to be poor and improvements can be gained making use of the Taylor series expansion of the kernel approximation of the function and its derivatives. The modified formulation is appealing providing more accurate results of the function and its derivatives simultaneously without changing the kernel function adopted in the computation. The request for greater accuracy needs kernel function derivatives with order up to the desidered …
The scientific payload on-board the HERMES-TP and HERMES-SP CubeSat missions
2021
HERMES (High Energy Rapid Modular Ensemble of Satellites) Technological and Scientific pathfinder is a space borne mission based on a LEO constellation of nano-satellites. The 3U CubeSat buses host new miniaturized detectors to probe the temporal emission of bright high-energy transients such as Gamma-Ray Bursts (GRBs). Fast transient localization, in a field of view of several steradians and with arcmin-level accuracy, is gained by comparing time delays among the same event detection epochs occurred on at least 3 nano-satellites. With a launch date in 2022, HERMES transient monitoring represents a keystone capability to complement the next generation of gravitational wave experiments. In t…
Performance of Hybrid-ARQ with Incremental Redundancy over Double Rayleigh Fading Channels
2011
In this paper, we study the performance of hybrid automatic repeat request (HARQ) with incremental redundancy (IR) over double Rayleigh channels. Such channels can be used to model the fading amplitude for vehicle-to-vehicle (V2V) communications. We study the performance of HARQ from an information theoretic perspective. Analytical expressions are derived for the $\epsilon$-outage capacity, the average number of transmissions, and the average transmission rate for HARQ with IR, assuming a maximum number of rounds for the HARQ protocol. In our study, the communication rate per HARQ round is adjusted to the average signal-to-noise ratio (SNR) such that a target outage probability is not excee…
A Meshfree Solver for the MEG Forward Problem
2015
Noninvasive estimation of brain activity via magnetoencephalography (MEG) involves an inverse problem whose solution requires an accurate and fast forward solver. To this end, we propose the Method of Fundamental Solutions (MFS) as a meshfree alternative to the Boundary Element Method (BEM). The solution of the MEG forward problem is obtained, via the Method of Particular Solutions (MPS), by numerically solving a boundary value problem for the electric scalar potential, derived from the quasi-stationary approximation of Maxwell’s equations. The magnetic field is then computed by the Biot-Savart law. Numerical experiments have been carried out in a realistic single-shell head geometry. The p…
Part of Speech Tagging Using Hidden Markov Models
2020
Abstract In this paper, we present a wide range of models based on less adaptive and adaptive approaches for a PoS tagging system. These parameters for the adaptive approach are based on the n-gram of the Hidden Markov Model, evaluated for bigram and trigram, and based on three different types of decoding method, in this case forward, backward, and bidirectional. We used the Brown Corpus for the training and the testing phase. The bidirectional trigram model almost reaches state of the art accuracy but is disadvantaged by the decoding speed time while the backward trigram reaches almost the same results with a way better decoding speed time. By these results, we can conclude that the decodi…
A multi-domain approach for smoothed particle hydrodynamics simulations of highly complex flows
2018
Abstract An efficient and accurate method is proposed to solve the incompressible flow momentum and continuity equations in computational domains partitioned into subdomains in the framework of the smoothed particle hydrodynamics method. The procedure does not require any overlap of the subdomains, which would result in the increase of the computational effort. Perfectly matching solutions are obtained at the surfaces separating neighboring blocks. The block interfaces can be both planar and curved surfaces allowing to easily decompose even geometrically complex domains. The smoothing length of the kernel function is maintained constant in each subdomain, while changing between blocks where…
Least-squares community extraction in feature-rich networks using similarity data
2021
We explore a doubly-greedy approach to the issue of community detection in feature-rich networks. According to this approach, both the network and feature data are straightforwardly recovered from the underlying unknown non-overlapping communities, supplied with a center in the feature space and intensity weight(s) over the network each. Our least-squares additive criterion allows us to search for communities one-by-one and to find each community by adding entities one by one. A focus of this paper is that the feature-space data part is converted into a similarity matrix format. The similarity/link values can be used in either of two modes: (a) as measured in the same scale so that one may …