Search results for " Population"
showing 10 items of 1682 documents
Drosophila Evolution over Space and Time (DEST) : A New Population Genomics Resource
2021
Drosophila melanogaster is a leading model in population genetics and genomics, and a growing number of whole-genome datasets from natural populations of this species have been published over the last years. A major challenge is the integration of disparate datasets, often generated using different sequencing technologies and bioinformatic pipelines, which hampers our ability to address questions about the evolution of this species. Here we address these issues by developing a bioinformatics pipeline that maps pooled sequencing (Pool-Seq) reads from D. melanogaster to a hologenome consisting of fly and symbiont genomes and estimates allele frequencies using either a heuristic (PoolSNP) or a…
The influence of temperature model assumptions on the prognosis accuracy of extinction risk
2000
Abstract For a species whose abundance is well-known to correlate on the degree of heat different temperature model assumptions may affect the prognosis accuracy of persistence. Likewise, year-to-year autocorrelations in weather fluctuations are known to decrease extinction risk. Thus, we investigated the grey bush cricket Platycleis albopunctata . For this species is known that growth and reproduction is mainly influenced by temperature. We developed a stochastic individual based model for the bush cricket. This day–degree model described the demographic growth of the species that depends on temperature. Daily temperatures were generated by five different methods: (i) temperatures were seq…
Population variability in space and time.
2000
One of the most ubiquitous phenomena of all natural populations is their variability in numbers in space and time. However, there are notable differences among populations in the way the population size fluctuates. One of the major challenges in population and community ecology is to explain and understand this variety and to find possible underlying rules that might be modified from case-to-case. Population variability also has a spatial component because fluctuations are often synchronized over relatively large distances. Recently, this has led to growing interest in how 'internal' (density-dependent) processes interact with 'external' factors such as environmental variability.
Dispersal of Egyptian Vultures Neophron percnopterus: the first case of long-distance relocation of an individual from France to Sicily.
2016
ABSTRACTKnowledge of juvenile dispersal is important for understanding population dynamics and for effective conservation, particularly of geographically isolated raptor populations. Here, we report the first documented case of a long-distance movement of an Egyptian Vulture Neophron percnopterus from the French population to Sicily. This observation opens a new perspective for the conservation of the small and endangered Sicilian population of this species, providing evidence that persistence of the Italian population may be aided by new input from other countries.
Effect of a gap on gene flow between otherwise adjacent transgenic Brassica napus crops.
2003
Gene flow resulting from cross pollination becomes an issue when transgenic crops are involved and the genetic modification carries a trait of ecological importance. As crop fields are often separated by a barren gap, such as an intervening roadway or unplanted area, I measured cross contamination between two herbicide-resistant transgenic fields (canola, Brassica napus) across a gap of up to 12 m. I focused on pollen exchange from the field border up to 7 m inside each field over two seasons. In the absence of a gap, I found that gene dispersal diminished rapidly with distance, with more than 40% of transgenic progeny found within the first meter from the edge of the adjacent crop. Cross c…
Fossorial but widespread: the phylogeography of the common spadefoot toad (Pelobates fuscus), and the role of the Po Valley as a major source of gene…
2007
International audience; Pelobates fuscus is a fossorial amphibian that inhabits much of the European plain areas. To unveil traces of expansion and contraction events of the species' range, we sequenced 702 bp of the mitochondrial cytochrome b gene. To infer the population history we applied phylogeographical methods, such as nested clade phylogeographical analysis (NCPA), and used summary statistics to analyse population structure under a neutral model of evolution. Populations were assigned to different drainage systems and we tested hypotheses of explicit refugial models using information from analysis of molecular variance, nucleotide diversity, effective population size estimation, NCP…
Vegetation structure and greenness in Central Africa from Modis multi-temporal data.
2013
African forests within the Congo Basin are generally mapped at regional scale as broad-leaved evergreen forests, with a main distinction between terra-firme and swamp forests types. At the same time, commercial forest inventories, as well as national maps, have highlighted a strong spatial heterogeneity of forest types. A detailed vegetation map generated using consistent methods is needed to inform decision makers about spatial forest organisation and theirs relationships with environmental drivers in the context of global change. We propose a multi-temporal remotely sensed data approach to characterize vegetation types using vegetation index annual profiles. The classifications identified…
Fishery-dependent and -independent data lead to consistent estimations of essential habitats
2016
AbstractSpecies mapping is an essential tool for conservation programmes as it provides clear pictures of the distribution of marine resources. However, in fishery ecology, the amount of objective scientific information is limited and data may not always be directly comparable. Information about the distribution of marine species can be derived from two main sources: fishery-independent data (scientific surveys at sea) and fishery-dependent data (collection and sampling by observers in commercial vessels). The aim of this paper is to compare whether these two different sources produce similar, complementary, or different results. We compare them in the specific context of identifying the Es…
Modelling sensitive elasmobranchs habitat
2013
Basic information on the distribution and habitat preferences of ecologically important species is essential for their management and protection. In the Mediterranean Sea there is increasing concern over elasmobranch species because their biological (ecological) characteristics make them highly vulnerable to fishing pressure. Their removal could affect the structure and function of marine ecosystems, inducing changes in trophic interactions at the community level due to the selective elimination of predators or prey species, competitors and species replacement. In this study Bayesian hierarchical spatial models are used to map the sensitive habitats of the three most caught elasmobranch spe…
Role of host genetic diversity for susceptibility-to-infection in the evolution of virulence of a plant virus
2019
Predicting viral emergence is difficult due to the stochastic nature of the underlying processes and the many factors that govern pathogen evolution. Environmental factors affecting the host, the pathogen and the interaction between both are key in emergence. In particular, infectious disease dynamics are affected by spatiotemporal heterogeneity in their environments. A broad knowledge of these factors will allow better estimating where and when viral emergence is more likely to occur. Here, we investigate how the population structure for susceptibility-to-infection genes of the plant Arabidopsis thaliana shapes the evolution of Turnip mosaic virus (TuMV). For doing so we have evolved TuMV …