Search results for " Quaternary"

showing 10 items of 148 documents

Organization into Higher Ordered Ring Structures Counteracts Membrane Binding of IM30, a Protein Associated with Inner Membranes in Chloroplasts and …

2016

The IM30 (inner membrane-associated protein of 30 kDa), also known as the Vipp1 (vesicle-inducing protein in plastids 1), has a crucial role in thylakoid membrane biogenesis and maintenance. Recent results suggest that the protein binds peripherally to membranes containing negatively charged lipids. However, although IM30 monomers interact and assemble into large oligomeric ring complexes with different numbers of monomers, it is still an open question whether ring formation is crucial for membrane interaction. Here we show that binding of IM30 rings to negatively charged phosphatidylglycerol membrane surfaces results in a higher ordered membrane state, both in the head group and in the inn…

0301 basic medicineChloroplastsMembrane lipids02 engineering and technologyBiologyBiochemistryThylakoids03 medical and health scienceschemistry.chemical_compoundMembrane LipidsBacterial ProteinsMembrane BiologyLipid bilayerProtein Structure QuaternaryMolecular BiologyPhosphatidylglycerolSynechocystisMembrane ProteinsBiological membranePhosphatidylglycerolsCell BiologySurface Plasmon Resonance021001 nanoscience & nanotechnologyKinetics030104 developmental biologyMembranechemistryBiochemistryMembrane proteinThylakoidMembrane biogenesisBiophysicsMutant ProteinsProtein Multimerization0210 nano-technologyProtein BindingThe Journal of biological chemistry
researchProduct

Cyclins B1, T1, and H differ in their molecular mode of interaction with cytomegalovirus protein kinase pUL97

2019

Human cytomegalovirus (HCMV) is a common β-herpesvirus causing life-long latent infections. HCMV replication interferes with cell cycle regulation in host cells because the HCMV-encoded cyclin-dependent kinase (CDK) ortholog pUL97 extensively phosphorylates the checkpoint regulator retinoblastoma protein. pUL97 also interacts with cyclins B1, T1, and H, and recent findings have strongly suggested that these interactions influence pUL97 substrate recognition. Interestingly, here we detected profound mechanistic differences among these pUL97-cyclin interactions. Our study revealed the following. (i) pUL97 interacts with cyclins B1 and H in a manner dependent on pUL97 activity and HCMV-specifi…

0301 basic medicineCyclin H[SDV]Life Sciences [q-bio]CytomegalovirusVirus ReplicationBiochemistry03 medical and health sciencesCyclin HViral ProteinsProtein DomainsCyclin-dependent kinaseHumansProtein phosphorylationCyclin B1PhosphorylationCyclin B1Protein Structure QuaternaryMolecular BiologyComputingMilieux_MISCELLANEOUSCyclin030102 biochemistry & molecular biologybiologyChemistryCyclin TRetinoblastoma proteinCell BiologyCell cycle3. Good healthCell biology030104 developmental biologyHEK293 Cellsbiology.proteinCyclin-dependent kinase 7
researchProduct

Entrapment and characterization of functional allosteric conformers of hemocyanin in sol–gel matrices

2016

Hemocyanins are giant oxygen transport proteins of molluscs and arthropods, which display high cooperativity and a complex pattern of conformations, generated by hierarchical allosteric interactions of their complex quaternary structure. A still unanswered question is the correlation between the functional properties of the postulated conformers and structural features that govern their oxygen binding, such as metal complex coordination. In this study we focus on the dodecameric hemocyanin of the crustacean Carcinus aestuarii, with the aim to obtain a functional and structural characterization of the individual conformational states giving rise to cooperativity, by entrapping hemocyanin int…

0301 basic medicinebiologyChemistryGeneral Chemical Engineeringmedicine.medical_treatmentOxygen transportActive siteCooperativityHemocyaninGeneral ChemistryProtein structure allosteric regulation hemocyaninallosteric regulation03 medical and health sciencesCrystallography030104 developmental biologyProtein structurebiology.proteinmedicineProtein quaternary structurehemocyaninConformational isomerismOxygen bindingMacromoleculeRSC Advances
researchProduct

Thermomineral waters of Greece: geochemical characterization

2020

75 °C). In terms of pH most results vary from 5.5 to 823 °C) ii) warm (23 40 °C) iii) thermal (40 75 °C) and iv) hyperthermal (&gtfew springs show either very low pH (&lt10) proposing serpentinization processes. Regarding TDS concentrations collected waters can be subdivided into low salinity (up to 1.5 g/L) brackish (up to 20 g/L) and saline (up to 43 g/L). The medium high salinities can be justified by mixing with sea water and/or strong waterrock interaction processes. Isotope composition of O and H ranges from 12.7 to +2.7 ‰ SMOW and from 91 to +12 ‰ SMOW respectively and is generally comprised between the Global Meteoric Water Line and the East Mediterranean Meteoric Water Line. Only few water samples show a positive shift for δ18O possibly related to high temperature waterrock interaction processes. Carbon dioxide (18 997000 μmol/mol) or N2 (1100 989000 μmol/mol) or CH4 (&ltMany geothermal areas of Greece are located in regions affected by Miocene or Quaternary volcanism and in continental basins characterised by elevated heat flow. Moreover the majority of them is found along the coast as well as in islands of the Aegean Sea and thus thermal water is often brackish to saline due to marine intrusion into costal aquifer. In the present study almost 300 thermal and cold mineral water samples were collected along the Hellenic territory with their physicochemical parameters (temperature pH electrical conductivity and Eh) and the amount of bicarbonates (titration with 0.1N HCl) being determined in situ. Additionally gases found either in free or dissolved phase were sampled. Both water and gas samples were analysed at the INGVPa laboratories for major ions (Ion Chromatography) silica (Inductively Coupled Plasma Optical Emission Spectrometry) chemical composition of free and dissolved gases (Gas Chromatography) water isotopes (O and H) and carbon and helium isotopes of free and dissolved gases (Mass Spectrometry). The temperature of the investigated waters ranges from 6.5 to 98°C pH from 1.96 to 11.98 whilst Total Dissolved Solids (TDS) from 0.06 to 43 g/L. Based on the temperature parameter waters can be divided into four groups: i) cold (&lt0.5 913000 μmol/mol) are the prevailing gas species found in the studied sites. The δ13CCO2 values ranged from 20.1 to +8.5 ‰ whilst the isotope ratio of He from 0.21 to 6.71 R/RA.4) suggesting interaction with H2Srich gases or very high pH values (&gtSettore GEO/08 - Geochimica E Vulcanologia
researchProduct

Tetramer visualization of gut-homing gluten-specific T cells in the peripheral blood of celiac disease patients

2007

Tetramers of MHC–peptide complexes are used for detection and characterization of antigen-specific T cell responses, but they require knowledge about both antigenic peptide and the MHC restriction element. The successful application of these reagents in human diseases involving CD4 + T cells is limited. Celiac disease, an intestinal inflammation driven by mucosal CD4 + T cells recognizing wheat gluten peptides in the context of disease-associated HLA-DQ molecules, is an ideal model to test the potential clinical use of these reagents. We investigated whether gluten-specific T cells can be detected in the peripheral blood of celiac disease patients using DQ2 tetramers. Nine DQ2 + patients a…

AdultGlutensT-LymphocytesT cellCellular differentiationBiologyInterferon-gammaHLA-DQ AntigensmedicineHumansInterferon gammaProtein Structure QuaternaryAgedchemistry.chemical_classificationMultidisciplinaryHLA-DQ Antigennutritional and metabolic diseasesCell DifferentiationBreadBiological SciencesMiddle AgedMHC restrictionGlutendigestive system diseasesStainingGastrointestinal TractCeliac DiseasePhenotypemedicine.anatomical_structurechemistryCase-Control StudiesImmunologyLeukocytes MononuclearHoming (hematopoietic)medicine.drugProceedings of the National Academy of Sciences
researchProduct

Concanavalin A aggregation and toxicity on cell cultures

2009

A number of neurodegenerative diseases are known to involve protein aggregation. Common mechanisms and structural properties of amyloids are thought to be involved in aggregation-related cytotoxicity. In this context we propose an experimental study on Concanavalin A (Con A) aggregation and use it as a model to study the relationship between cell toxicity and aggregation processes. Depending on solution conditions, Con A aggregation has been monitored by static and dynamic light scattering, Thioflavin T emission, and FTIR absorption. The morphology of different aggregate species was verified by means of Atomic Force Microscopy and Confocal Microscopy. During the aggregation pathway the nati…

AmyloidCell SurvivalBiophysicsApoptosisContext (language use)Protein aggregationMicroscopy Atomic ForceFibrilBiochemistryAnalytical Chemistrychemistry.chemical_compoundProtein structureCell Line TumorSpectroscopy Fourier Transform InfraredConcanavalin AExtracellularHumansProtein Structure QuaternaryCytotoxicityMolecular BiologyNeuronsbiologyChemistryBiochemistryConcanavalin Abiology.proteinThioflavinProtein aggregation Amyloids Citotoxicity Oligomers
researchProduct

The Calabrian Stage redefined

2008

The name Calabrian was introduced in the geological literature by the French stratigrapher Maurice Gignoux in 1910, and later described in his important monograph (633 pages) "Les formations marines pliocènes et quaternaires de l'Italie du sud et de la Sicile" published in 1913. Detailed data were provided on several sections (Santa Maria di Catanzaro, Caraffa, Monasterace, Palermo) and on their fossil content. The Calabrian Stage has commonly been used for over fifty years as the oldest subdivision of the Quaternary, notably in the time scales of Berggren & van Couvering (1974) and Haq & Eysinga (1987). However, after the GSSP for the Pliocene/Pleistocene boundary (P/P) was approved by INQ…

BIOSTRATIGRAFIAPleistoceneQUATERNARIOMAGNETOSTRATIGRAFIABiostratigraphyStratigraphy Quaternary calcareous plankton biostratigraphyCRONOSTRATIGRAFIA STANDARDGlobal Boundary Stratotype Section and PointPaleontologyStratotypeStage (stratigraphy)ISOTOPI STABILICalabrian Stage redefinedIce ageGeneral Earth and Planetary SciencesQuaternaryGeologyMagnetostratigraphyEpisodes
researchProduct

D-Galactose binding lectins from the tunicate Ascidiamalaca: Subunit characterization and hemocyte surface distribution

1988

Abstract D-galactose specific lectins purified from Ascidia malaca serum contain a major protein component with an apparent molecular weight of about 58,000 daltons, which moves more rapidly under non-reducing conditions. Intramolecular disulfide linkages can explain this behaviour, suggesting a compact protein structure. Membrane lectins have been demonstrated on the surface of about 34% hemocytes by immunofluorescent methods using a rabbit antiserum against the isolated serum lectins. Small, medium and large hemocytes can be positive, as also shown by binding on Sepharose spherules or by rosette formation with sheep and rabbit erythrocytes. Binding is inhibited by the same sugars specific…

Binding SitesBlood CellsHemocytesRosette FormationGalectinsProtein subunitCell MembraneImmunologyLectinBiologyBinding CompetitiveSepharosechemistry.chemical_compoundHemagglutininsProtein structurechemistryBiochemistryGalactoseGalactose bindingbiology.proteinAnimalsProtein quaternary structureUrochordataAntibodyDevelopmental BiologyDevelopmental & Comparative Immunology
researchProduct

Nested allosteric interactions in extracellular hemoglobin of the leech Macrobdella decora

2003

Hemoglobin from the leech Macrobdella decora belongs to the class of giant extracellular hexagonal bilayer globin structures found in annelid and vestimentiferan worms. These complexes consist of 144 heme-bearing subunits, exhibit a characteristic quaternary structure (2 × (6 × (3 × 4))), and contain tetramers as basic substructures that express cooperative oxygen binding and thus provide a structural basis for a hierarchy in allosteric interactions. A thorough analysis of the isolated tetramer indicates that it functions as a trimer of cooperatively interacting subunits and a non-cooperative monomer rather than as four interacting subunits. A thermodynamic analysis of the whole molecule fa…

Binding Sitesgenetic structuresStereochemistryMacromolecular SubstancesProtein ConformationBilayerAllosteric regulationTrimerCell BiologyBiologyBiochemistryGroELOxygenHemoglobinsProtein SubunitsTetramerLeechesAnimalsProtein quaternary structureGlobinProtein Structure QuaternaryMolecular BiologyOxygen binding
researchProduct

Considerations on an integrated biochronological scale of Italian Quaternary Mammals

2011

Viene analizzato il lavoro di MASINI e SALA (2007) sull’approccio integrato della distribuzione dei grandi e piccoli mammiferi dell’Italia continentale del tardo Pliocene e del Pleistocene, tenendo conto della nuova definizione del Quaternario, mettendo in risalto i punti di forza e quelli deboli della scala proposta. Vengono inoltre aggiunti nuovi dati sulla biocronologia a mammiferi del Pleistocene Superiore. The paper of MASINI and SALA (2007) regarding an integrated approach on the stratigraphic distribution patterns of large and small mammals in the late Pliocene and Pleistocene of the Italian peninsula is analysed, showing the weak and strong points. New data are presented on the mamm…

Biochronology Mammals Quaternary Italian peninsulaBiocronologia Mammiferi Quaternario Italia continentaleSettore GEO/01 - Paleontologia E Paleoecologia
researchProduct