Search results for " Regulation"

showing 10 items of 3187 documents

The Study of Carbamoyl Phosphate Synthetase 1 Deficiency Sheds Light on the Mechanism for Switching On/Off the Urea Cycle

2015

12 páginas, 4 figuras, 2 tablas.

Conformational changeCarbamoyl-Phosphate Synthase I Deficiency DiseaseAllosteric regulationCarbamoyl-Phosphate Synthase (Ammonia)Urea cycle diseases610 Medicine & healthBiologyMolecular Dynamics Simulationurologic and male genital diseases03 medical and health sciences0302 clinical medicineGlutamates1311 GeneticsAmmoniaEnzyme StabilityGeneticsmedicine1312 Molecular BiologyHumansUreaHyperammonemiaSite-directed mutagenesisMolecular Biology030304 developmental biologychemistry.chemical_classification0303 health sciencesSite-directed mutagenesisurogenital systemMutagenesisCarbamoyl phosphate synthetase 1HyperammonemiaCarbamoyl phosphate synthetasemedicine.diseaseAllosteric regulation3. Good healthProtein Structure TertiaryRestrained molecular dynamicsKineticsEnzymeBiochemistrychemistry10036 Medical ClinicEnzymeUrea cycleMutationInborn errors030217 neurology & neurosurgerySignal Transduction
researchProduct

Decipher the mechanisms of protein conformational changes induced by nucleotide binding through free-energy landscape analysis: ATP binding to Hsp70.

2013

ATP regulates the function of many proteins in the cell by transducing its binding and hydrolysis energies into protein conformational changes by mechanisms which are challenging to identify at the atomic scale. Based on molecular dynamics (MD) simulations, a method is proposed to analyze the structural changes induced by ATP binding to a protein by computing the effective free-energy landscape (FEL) of a subset of its coordinates along its amino-acid sequence. The method is applied to characterize the mechanism by which the binding of ATP to the nucleotide-binding domain (NBD) of Hsp70 propagates a signal to its substrate-binding domain (SBD). Unbiased MD simulations were performed for Hsp…

Conformational changeProtein ConformationAllosteric regulationPlasma protein bindingMolecular Dynamics SimulationCellular and Molecular NeuroscienceProtein structureAdenosine TriphosphateGeneticsHSP70 Heat-Shock ProteinsMolecular Biologylcsh:QH301-705.5Nuclear Magnetic Resonance BiomolecularEcology Evolution Behavior and SystematicsEcologybiologyChemistryEscherichia coli ProteinsEnergy landscapeComputational Theory and MathematicsBiochemistrylcsh:Biology (General)Docking (molecular)Modeling and SimulationChaperone (protein)Biophysicsbiology.proteinBinding domainProtein BindingResearch ArticlePLoS computational biology
researchProduct

The Allosteric Effector l-Lactate Induces a Conformational Change of 2×6-meric Lobster Hemocyanin in the Oxy State as Revealed by Small Angle X-ray S…

2001

Abstract Hemocyanins are multisubunit respiratory proteins found in many invertebrates. They bind oxygen highly cooperatively. However, not much is known about the structural basis of this behavior. We studied the influence of the physiological allosteric effectorl-lactate on the oxygenated quaternary structure of the 2×6-meric hemocyanin from the lobster Homarus americanus employing small angle x-ray scattering (SAXS). The presence of 20 mm l-lactate resulted in different scattering curves compared with those obtained in the absence of l-lactate. The distance distribution functionsp(r) indicated a more compact molecule in presence ofl-lactate, which is also reflected in a reduction of the …

Conformational changeProtein ConformationScatteringChemistrySmall-angle X-ray scatteringmedicine.medical_treatmentAllosteric regulationHemocyaninCell BiologyBiochemistryNephropidaeMicroscopy ElectronCrystallographyAllosteric RegulationHemocyaninsRadius of gyrationmedicineAnimalsScattering RadiationProtein quaternary structureLactic AcidMolecular BiologyOxygen bindingJournal of Biological Chemistry
researchProduct

Human Inducible Hsp70: Structures, Dynamics, and Interdomain Communication from All-Atom Molecular Dynamics Simulations

2015

The 70 kDa human heat shock protein is a major molecular chaperone involved in de novo folding of proteins in vivo and refolding of proteins under stress conditions. Hsp70 is related to several "misfolding diseases" and other major pathologies, such as cancer, and is a target for new therapies. Hsp70 is comprised of two main domains: an N-terminal nucleotide binding domain (NBD) and a C-terminal substrate protein binding domain (SBD). The chaperone function of Hsp70 is based on an allosteric mechanism. Binding of ATP in NBD decreases the affinity of the substrate for SBD, and hydrolysis of ATP is promoted by binding of polypeptide segments in the SBD. No complete structure of human Hsp70 is…

Conformational changebiologySaccharomyces cerevisiaeAllosteric regulationPlasma protein bindingbiology.organism_classificationComputer Science ApplicationsMolecular dynamicsBiochemistryCyclic nucleotide-binding domainATP hydrolysisChaperone (protein)biology.proteinBiophysicsPhysical and Theoretical ChemistryJournal of Chemical Theory and Computation
researchProduct

Farmers' costs of environmental regulation: Reducing the consumption of nitrogen in citrus farming

2007

Abstract Environmental externalities in agriculture, and the choice of suitable instruments to integrate environmental concerns into agricultural policies, are a matter of interest for the Common Agricultural Policy. In this paper, we use Data Envelopment Analysis techniques to assess the impact on farms' performance of two environmentally-friendly regulations aimed at abating consumption of inorganic nitrogen in Spanish citrus farming: levies on purchased nitrogen and nitrogen use permits for farms. By comparing farms' short-run maximum profits under both unregulated and regulated scenarios a regulation cost index is computed. Our results show that nitrogen overuse is mostly a matter of ma…

Consumption (economics)PollutionEconomics and EconometricsNatural resource economicsbusiness.industrymedia_common.quotation_subjectAgricultural economicsAgricultureEconomicsData envelopment analysisEnvironmental regulationInefficiencybusinessCommon Agricultural PolicyExternalitymedia_commonEconomic Modelling
researchProduct

The urban and environmental building code as implementation tool

2014

The frame within which the work is placed refers to the actions necessary to achieve the objectives of the coverage of the consumption of energy from renewable sources compared to the gross final consumption, posed to Regions by 2020, and that can be implemented through various actions involving local gov-ernments including the revision of the Building Regulations municipalities in a sustainable view. Theseactions are increasingly being recognized as energy plan-ning tools for the territories where administrations have committed to the Euro-pean project Covenant of Mayors. The discussion shows how the adoption by the Regions of Guidelines for sustainable Municipal Building Regulations can b…

Consumption (economics)Work (electrical)energy efficiency in buildingBuilding codeSustainabilityenvironmental planningEnvironmental scienceEnergy planningMunicipal building regulationEnvironmental planningBuilding envelopeEfficient energy useMunicipal or urban engineering
researchProduct

MicroRNA-Based Therapeutic Perspectives in Myotonic Dystrophy

2019

Myotonic dystrophy involves two types of chronically debilitating rare neuromuscular diseases: type 1 (DM1) and type 2 (DM2). Both share similarities in molecular cause, clinical signs, and symptoms with DM2 patients usually displaying milder phenotypes. It is well documented that key clinical symptoms in DM are associated with a strong mis-regulation of RNA metabolism observed in patient’s cells. This mis-regulation is triggered by two leading DM-linked events: the sequestration of Muscleblind-like proteins (MBNL) and the mis-regulation of the CUGBP RNA-Binding Protein Elav-Like Family Member 1 (CELF1) that cause significant alterations to their important functions in RNA processing. It ha…

Context (language use)miRNA-based drugReviewBioinformaticsMyotonic dystrophyCatalysislcsh:ChemistryInorganic ChemistryMBNL proteinsCELF1microRNADrug DiscoveryMedicineAnimalsHumansPhysical and Theoretical Chemistrylcsh:QH301-705.5Molecular BiologySpectroscopyCELF1 ProteinRna processingmyotonic dystrophymicroRNAbusiness.industryOrganic ChemistryAlternative splicingmiRNA-targeting drugRNA-Binding ProteinsGeneral MedicineGenetic Therapymedicine.diseasePhenotypeComputer Science ApplicationsAlternative SplicingMicroRNAslcsh:Biology (General)lcsh:QD1-999Drug developmentGene Expression Regulationantisense oligonucleotidesbusinessFunction (biology)International Journal of Molecular Sciences
researchProduct

Normativa urbanistica e contratto preliminare

2015

The following article addresses the critical and controversial question concerning the invalidity of the transfer of immovable property not complying with urban planning regulation and the implication of this invalidity in the specific context of the preliminary contract. The paper comments an innovative and recent ruling of the Italian Supreme Court that proposes a crucial change in comparison with the previous decisions made in this matter. The most relevant aspect of the new Supreme Court's guideline, which makes this judgment a leading case, concerns the extension to preliminary contracts of nullity deriving from the conflict with urban planning regulations. This is an important revirem…

Contratto preliminare Normativa urbanistica Suprema Corte Trasferimenti immobiliari.Settore IUS/01 - Diritto PrivatoPreliminary contract Urban planning regulation Italian Supreme Court Transfer of immovable property.
researchProduct

Arts. 34-40 EIR

2016

The comments on Arts. 34-40 of EU Regulation 2015/848 deal with opening of secondary insolvency proceedings. These comments systematically tackle the prerequisites required for the opening of secondary insolvency proceedings, the relationship between main and secondary proceedings and the duties of cooperation that are put on the courts and the insolvency practitioners of both main and secondary proceedings. A particular attention is devoted to the introduction of the so-called “Undertaking to Avoid the Opening of Secondary Insolvency Proceedings” (Art. 36).

Cooperation between Main and Secondary Insolvency ProceedingUndertaking to Avoid the Opening of Secondary Insolvency Proceedings.EU Regulation 2015/848Secondary Insolvency ProceedingSettore IUS/04 - Diritto Commerciale
researchProduct

From ‘prisoner’s dilemma’ to reluctance to use judicial discretion: the enemies of cooperation in European cross-border cases – the situation of Ital…

2017

This text analysis both how Italian courts cooperated in European cross-border insolvency law cases, and how Regulation 848/2015 (Recast) could make cooperation in future cases smoother. Additional comments on the new prescriptions are also provided for.

CooperationItalyEU Regulation 2015/848EurofoodSettore IUS/04 - Diritto Commerciale
researchProduct