Search results for " Systematics"
showing 10 items of 6576 documents
Inter- and intra-specific genomic divergence in Drosophila montana shows evidence for cold adaptation
2018
This work was supported by the Academy of Finland to AH (projects 132619 and 267244) and to MK (projects 268214 and 272927) and NERC (UK) funding to MGR (grants NE/E015255/1 and NE/J020818/1) and PhD studentship to DJP (NE/I528634/1). The genomes of species that are ecological specialists will likely contain signatures of genomic adaptation to their niche. However, distinguishing genes related to ecological specialism from other sources of selection and more random changes is a challenge. Here we describe the genome of Drosophila montana, which is the most extremely cold-adapted Drosophila species. We use branch tests to identify genes showing accelerated divergence in contrasts between col…
The effect of RNA substitution models on viroid and RNA virus phylogenies.
2018
Abstract Many viroids and RNA viruses have genomes that exhibit secondary structure, with paired nucleotides forming stems and loops. Such structures violate a key assumption of most methods of phylogenetic reconstruction, that sequence change is independent among sites. However, phylogenetic analyses of these transmissible agents rarely use evolutionary models that account for RNA secondary structure. Here, we assess the effect of using RNA-specific nucleotide substitution models on the phylogenetic inference of viroids and RNA viruses. We obtained data sets comprising full-genome nucleotide sequences from six viroid and ten single-stranded RNA virus species. For each alignment, we inferre…
Getting there and around: Host range oscillations during colonization of the Canary Islands by the parasitic nematode Spauligodon
2016
Episodes of expansion and isolation in geographic range over space and time, during which parasites have the opportunity to expand their host range, are linked to the development of host-parasite mosaic assemblages and parasite diversification. In this study, we investigated whether island colonization events lead to host range oscillations in a taxon of host-specific parasitic nematodes of the genus Spauligodon in the Canary Islands. We further investigated whether range oscillations also resulted in shifts in host breadth (i.e., specialization), as expected for parasites on islands. Parasite phylogeny and divergence time estimates were inferred from molecular data with Bayesian methods. H…
Not that clean: Aquaculture-mediated translocation of cleaner fish has led to hybridization on the northern edge of the species' range
2021
Translocation and introduction of non-native organisms can have major impacts on local populations and ecosystems. Nevertheless, translocations are common practices in agri- and aquaculture. Each year, millions of wild-caught wrasses are transported large distances to be used as cleaner fish for parasite control in marine salmon farms. Recently, it was documented that translocated cleaner fish are able to escape and reproduce with local wild populations. This is especially a challenge in Norway, which is the world's largest salmon producer. Here, a panel of 84 informative SNPs was developed to identify the presence of nonlocal corkwing wrasse (Symphodus melops) escapees and admixed individu…
Genetic structure of a patchily distributed philopatric migrant: implications for management and conservation
2017
Significant demographic fluctuations can have major genetic consequences in wild populations. The lesser kestrel (Falco naumanni) has suffered both population declines and range fragmentation during the second half of the 20th century. In this study we analysed multilocus microsatellite data to assess the genetic structure of the species. Our analysis revealed significant genetic structuring of lesser kestrel populations, not only at the cross-continental scale, but also regionally within the Central and Eastern (CE) Mediterranean region. We detected signs of genetic bottlenecks in some of the peripheral populations coupled with small effective population sizes. Values of genetic differenti…
Hybridization, ecogeographical displacement and the emergence of new lineages – A genotyping‐by‐sequencing and ecological niche and species distribut…
2021
Ecogeographical displacement of homoploid hybrid lineages from their parents is well documented and considered an important mechanism to achieve reproductive isolation. In this study, we investigated the origin of the flowering plant species Sempervivum tectorum in the Massif Central (France) through homoploid hybridization between lineages of the species from the Rhine Gorge area (Germany) and the Pyrenees (France). We used genotyping-by-sequencing genetic data as evidence for the hybrid origin of the Massif Central lineage, and WorldClim climatic data and soil pH and soil temperature data collected by us for ecological niche and species distribution modelling. We could show that the Massi…
Love at first sniff: a spermatophore-associated pheromone mediates partner attraction in a collembolan species
2017
Mate choice is essential in most animals, as a good choice of mating partner largely determines reproductive success. Much evidence shows that olfactory cues play an important role in mate choice. However, the integration of chemical, visual and acoustic cues, often used when both partners meet, makes it hard to test whether olfaction alone can mediate reproductive decisions. Interestingly, several invertebrates have adopted a mating system where males deposit their sperm (packed in spermatophores) in the environment for females to pick up with no visual contact between the sexes. In this case the male cue is conveyed by the spermatophore only. Earlier studies on a species with indirect spe…
Catálogo de los líquenes y hongos liquenícolas de Sierra Nevada (España)
2021
The authors are grateful to the Regional Ministry of Environment and Spatial Planning of Andalucía and the direction of the Sierra Nevada National Park for the facilities and the means placed at their disposal to carry out this work. Ana Rosa Burgaz has received financial support from the project CGL2013-41839-P, Ministry of Economy and Competitiveness, Spain. Maria Prieto, Clara Rodríguez and Sergio Muriel were funded by the project CGL2016-80562-P from MINECO, Spain. Salvador Chiva and Cristina Dumitru were funded by the Ministerio de Economía y Competitividad (MINECO CGL2016–79158-P) and Prometeo Excellence in Research Program (Generalitat Valenciana, PROMETEO/2017/039), Spain.
Mechanisms of Resistance to Insecticidal Proteins from Bacillus thuringiensis
2021
Insecticidal proteins from the bacterium Bacillus thuringiensis ( Bt) are used in sprayable formulations or produced in transgenic crops as the most successful alternatives to synthetic pesticides. The most relevant threat to sustainability of Bt insecticidal proteins (toxins) is the evolution of resistance in target pests. To date, high-level resistance to Bt sprays has been limited to one species in the field and another in commercial greenhouses. In contrast, there are currently seven lepidopteran and one coleopteran species that have evolved practical resistance to transgenic plants producing insecticidal Bt proteins. In this article, we present a review of the current knowledge on mec…
Exposure to environmental radionuclides is associated with altered metabolic and immunity pathways in a wild rodent
2019
Wildlife inhabiting environments contaminated by radionuclides face putative detrimental effects of exposure to ionizing radiation, with biomarkers such as an increase in DNA damage and/or oxidative stress commonly associated with radiation exposure. To examine the effects of exposure to radiation on gene expression in wildlife, we conducted a de novo RNA sequencing study of liver and spleen tissues from a rodent, the bank vole Myodes glareolus. Bank voles were collected from the Chernobyl Exclusion Zone (CEZ), where animals were exposed to elevated levels of radionuclides, and from uncontaminated areas near Kyiv, Ukraine. Counter to expectations, we did not observe a strong DNA damage resp…