Search results for " adaptation"

showing 10 items of 504 documents

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA…

2020

Genetic variation is the fuel of evolution, with standing genetic variation especially important for short-term evolution and local adaptation. To date, studies of spatiotemporal patterns of genetic variation in natural populations have been challenging, as comprehensive sampling is logistically difficult, and sequencing of entire populations costly. Here, we address these issues using a collaborative approach, sequencing 48 pooled population samples from 32 locations, and perform the first continent-wide genomic analysis of genetic variation in European Drosophila melanogaster. Our analyses uncover longitudinal population structure, provide evidence for continent-wide selective sweeps, ide…

0106 biological sciencesMaleincipient sexual isolationQH301 BiologyAcclimatizationADNGenome Insect01 natural sciencesPopulation genomicsAdaptation; Clines; Demography; Population genomics; Selection; SNPs; Structural variants; Acclimatization; Altitude; Animals; DNA Viruses; Drosophila melanogaster; Europe; Genome Mitochondrial; Haplotypes; Insect Viruses; Male; Phylogeography; Polymorphism Single Nucleotide; Genome Insect; Genomic Structural Variation; Microbiota; Selection GeneticSDG 13 - Climate ActionComputingMilieux_MISCELLANEOUSeducation.field_of_study0303 health sciencesAltitude[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]PE&RCgeneettinen muunteluPhylogeographyDrosophila melanogasterLaboratory of GeneticsTransposable elementnorth-americanmahlakärpäsetSettore BIO/18 - GENETICAselectionLaboratorium voor Erfelijkheidsleeramino-acid polymorphism03 medical and health sciencesGeneticGeneticsAdaptation demographyMicrobiomeAdaptationPolymorphismeducationDrosophilaMolecular BiologySelectionEcology Evolution Behavior and SystematicsDemography[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]DNAchemistryEvolutionary biologyGenome MitochondrialGenomic Structural Variationinversion in(3r)payneAdaptationPopulation genomicsStructural variantsGenètica[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosisadaptation demographyCandidate genenucleotide polymorphismAcademicSubjects/SCI01180chemistry.chemical_compoundMelanogaster2. Zero hungerGenomebiologyMicrobiotaSingle NucleotideClinesclinesMitochondrialEuropepopulaatiogenetiikkatransposable elementsDrosophila melanogasterSNPsnatural-populationspopulation genomicsPopulationnext-generationDrosòfila melanogasterInsect Viruses010603 evolutionary biologyPolymorphism Single NucleotideQH301latitudinal clineGenetic variationAnimalsSelection GeneticSelection (genetic algorithm)DiscoveriesLocal adaptation030304 developmental biologylife-historyAcademicSubjects/SCI01130DNA Virusesstructural variantsDASbiology.organism_classificationHaplotypes13. Climate actionperimä[SDE.BE]Environmental Sciences/Biodiversity and EcologyInsectDNAMolecular Biology and Evolution
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Interbreeding between local and translocated populations of a cleaner fish in an experimental mesocosm predicts risk of disrupted local adaptation

2019

Source at https://doi.org/10.1002/ece3.5246. Translocation of organisms within or outside its native range carries the risk of modifying the community of the recipient ecosystems and induces gene flow between locally adapted populations or closely related species. In this study, we evaluated the genetic consequences of large‐scale translocation of cleaner wrasses that has become a common practice within the salmon aquaculture industry in northern Europe to combat sea lice infestation. A major concern with this practice is the potential for hybridization of escaped organisms with the local, recipient wrasse population, and thus potentially introduce exogenous alleles and breaking down coadap…

0106 biological sciencesMating behaviorPopulationReproductive fitnessZoologyVDP::Landbruks- og Fiskerifag: 900::Fiskerifag: 920::Akvakultur: 922Parentage assignmentBiologyCleaner fish010603 evolutionary biology01 natural sciencesGene flowMesocosm03 medical and health scienceslcsh:QH540-549.5VDP::Agriculture and fishery disciplines: 900::Fisheries science: 920::Fish health: 923VDP::Landbruks- og Fiskerifag: 900::Fiskerifag: 920::Fiskehelse: 923Corkwing wrasseeducationMicrosatellitesEcology Evolution Behavior and SystematicsOriginal Research030304 developmental biologyNature and Landscape ConservationLocal adaptationVDP::Agriculture and fishery disciplines: 900::Fisheries science: 920::Aquaculture: 9220303 health scienceseducation.field_of_studySymphodus melopsEcologyReproductive successbiology.organism_classificationWrasselcsh:EcologyCorkwing wrasse
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Handbook of protocols for standardized measurement of terrestrial invertebrate functional traits

2017

Trait-based approaches are increasingly being used to test mechanisms underlying species assemblages and biotic interactions across a wide range of organisms including terrestrial arthropods and to investigate consequences for ecosystem processes. Such an approach relies on the standardized measurement of functional traits that can be applied across taxa and regions. Currently, however, unified methods of trait measurements are lacking for terrestrial arthropods and related macroinvertebrates (terrestrial invertebrates hereafter). Here, we present a comprehensive review and detailed protocol for a set of 29 traits known to be sensitive to global stressors and to affect ecosystem processes a…

0106 biological sciencesMorphologylifeRange (biology)DATABASEPhysiology[SDV]Life Sciences [q-bio]BiologyFunctional diversity010603 evolutionary biology01 natural sciencesENVIRONMENTAL-CHANGE10127 Institute of Evolutionary Biology and Environmental StudiesSpecies featuresLife-historyEcosystemBehaviourTaxonomic rankEcology Evolution Behavior and SystematicsTrophic levelInvertebrateBODY-SIZECLIMATE-CHANGE[ SDV ] Life Sciences [q-bio]Ecology010604 marine biology & hydrobiologyRESPONSE DIVERSITYFeedingLABORATORY ADAPTATIONSpecies diversity15. Life on landspecies features; species characteristics; physiology; morphology; feeding; behaviour; life-history; functional diversityTaxon1105 Ecology Evolution Behavior and SystematicsSpecies characteristicsTraitCOMMUNITY-LEVEL570 Life sciences; biology590 Animals (Zoology)historySPECIES TRAITSPLANT TRAITSFunctional Ecology
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Spatiotemporal Structure of Host‐Pathogen Interactions in a Metapopulation

2009

International audience; The ecological and evolutionary dynamics of species are influenced by spatiotemporal variation in population size. Unfortunately, we are usually limited in our ability to investigate the numerical dynamics of natural populations across large spatial scales and over long periods of time. Here we combine mechanistic and statistical approaches to reconstruct continuous-time infection dynamics of an obligate fungal pathogen on the basis of discrete-time occurrence data. The pathogen, Podosphaera plantaginis, infects its host plant, Plantago lanceolata, in a metapopulation setting where the presence of the pathogen has been recorded annually for 6 years in similar to 4,00…

0106 biological sciencesPODOSPHAERA PLANTAGINISMetapopulationRELATION PLANTE-PATHOGENEBiologyENCOUNTER RATE010603 evolutionary biology01 natural sciences03 medical and health sciencesAscomycotaHOST-PARASITE INTERACTIONAnimals[INFO]Computer Science [cs]MECHANISTIC-STATISTICAL MODEL[MATH]Mathematics [math]Evolutionary dynamicsPlantagoFinlandEcology Evolution Behavior and SystematicsOverwinteringCoevolutionPlant Diseases030304 developmental biologyLocal adaptation0303 health sciencesObligateHost (biology)EcologyCOEVOLUTIONPopulation sizeBiological EvolutionSURVIVAL PROBABILITYTEMPORAL STABILITYPLANTAGO LANCELOLATAHost-Pathogen InteractionsSeasonsAlgorithmsThe American Naturalist
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Breeding success of the Great Tit Parus major in relation to attributes of natural nest cavities in a primeval forest

2015

An overlap in attributes of nest cavities used by Great Tit Parus major across Eurasia suggests similar nest site preferences within the geographical range, although the drivers of these preferences are unclear. To determine whether preferred cavities provide conditions enhancing successful reproduction, we investigated the breeding performance of Great Tits in relation to tree cavity characteristics using data collected during 2008–2011 in primeval conditions (Białowieża National Park, Poland). Here, tree cavities are diverse and superabundant but nesting birds are at risk from a variety of predators. According to expectations, nest losses were high (60 % of Great Tit nests failed), mostly…

0106 biological sciencesParusAvian clutch sizegeographygeography.geographical_feature_categorybiologyDryomys nitedulaEcologyOld-growth forestbiology.organism_classification010603 evolutionary biology01 natural sciencesEcology and Environment010605 ornithologyPredationNestbiology.animalTree cavities Nest site selection Adaptations Nest predation Clutch size Białowieża National ParkDormouseZoologyNest boxJournal of Ornithology
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Plasmodium relictum infection and MHC diversity in the house sparrow (Passer domesticus).

2010

Antagonistic coevolution between hosts and parasites has been proposed as a mechanism maintaining genetic diversity in both host and parasite populations. In particular, the high level of genetic diversity usually observed at the major histocompatibility complex (MHC) is generally thought to be maintained by parasite-driven selection. Among the possible ways through which parasites can maintain MHC diversity, diversifying selection has received relatively less attention. This hypothesis is based on the idea that parasites exert spatially variable selection pressures because of heterogeneity in parasite genetic structure, abundance or virulence. Variable selection pressures should select for…

0106 biological sciencesPlasmodium[ SDV.IMM.IA ] Life Sciences [q-bio]/Immunology/Adaptive immunology01 natural sciencessusceptibilityMajor Histocompatibility Complex[ SDE ] Environmental SciencesGene Frequency[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisResearch ArticlesGeneral Environmental ScienceGenetics0303 health sciencesbiologyPlasmodium relictumGeneral Medicine3. Good health[SDV.IMM.IA]Life Sciences [q-bio]/Immunology/Adaptive immunologyGenetic structure[SDE]Environmental Sciencesavian malariaGeneral Agricultural and Biological SciencesSparrowsMalaria AvianAntagonistic CoevolutionMajor histocompatibility complex010603 evolutionary biologyGeneral Biochemistry Genetics and Molecular Biologyresistance03 medical and health sciencesAvian malariamedicinePasser domesticusAnimalsSelection GeneticAllelesSelection (genetic algorithm)030304 developmental biologyLocal adaptationGenetic diversity[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyGeneral Immunology and Microbiologydiversifying selectionbiology.organism_classificationmedicine.diseaseImmunity InnatePlasmodium relictumbiology.protein[SDE.BE]Environmental Sciences/Biodiversity and Ecology[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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Fine-Scale Population Differences in Atlantic Cod Reproductive Success: A Potential Mechanism for Ecological Speciation in a Marine Fish

2018

Abstract Successful resource‐management and conservation outcomes ideally depend on matching the spatial scales of population demography, local adaptation, and threat mitigation. For marine fish with high dispersal capabilities, this remains a fundamental challenge. Based on daily parentage assignments of more than 4,000 offspring, we document fine‐scaled temporal differences in individual reproductive success for two spatially adjacent (<10 km) populations of a broadcast‐spawning marine fish. Distinguished by differences in genetics and life history, Atlantic cod (Gadus morhua) from inner‐ and outer‐fjord populations were allowed to compete for mating and reproductive opportunities. After …

0106 biological sciencesPopulationfjord010603 evolutionary biology01 natural sciencesEcological speciationGadus14. Life underwatereducationEcology Evolution Behavior and SystematicsNature and Landscape ConservationLocal adaptationOriginal Researcheducation.field_of_studyEcologybiologyEcotypeReproductive successEcology010604 marine biology & hydrobiologybiology.organism_classificationmatingGadus morhuaAtlantic codparentageBiological dispersalAtlantic codbroadcast spawning
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Viral fitness determines the magnitude of transcriptomic and epigenomic reprograming of defense responses in plants

2020

Although epigenetic factors may influence the expression of defense genes in plants, their role in antiviral responses and the impact of viral adaptation and evolution in shaping these interactions are still poorly explored. We used two isolates of turnip mosaic potyvirus with varying degrees of adaptation to Arabidopsis thaliana to address these issues. One of the isolates was experimentally evolved in the plant and presented increased load and virulence relative to the ancestral isolate. The magnitude of the transcriptomic responses was larger for the evolved isolate and indicated a role of innate immunity systems triggered by molecular patterns and effectors in the infection process. Sev…

0106 biological sciencesPotyvirusAdaptation BiologicalArabidopsisTurnip mosaic virus01 natural sciencesEpigenesis Genetic03 medical and health sciencesEpigenomeBiotic stressGeneticsPlant–virus interactionTurnip mosaic virusEpigeneticsMolecular BiologyGeneRNA-Directed DNA MethylationEcology Evolution Behavior and Systematics030304 developmental biologyEpigenomicsGenetics0303 health sciencesbiologyRNA-directed DNA methylationsystems biologyEpigenomevirus adaptationDNA Methylationbiology.organism_classificationBiological EvolutionRNA silencingExperimental evolutionHost-Pathogen InteractionsDNA methylationMethylomeGenetic FitnessTranscriptome010606 plant biology & botany
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Adaptation in response to environmental unpredictability

2017

Understanding how organisms adaptively respond to environmental fluctuations is a fundamental question in evolutionary biology. The Mediterranean region typically exhibits levels of environmental unpredictability that vary greatly in habitats over small geographical scales. In cyclically parthenogenetic rotifers, clonal proliferation occurs along with occasional bouts of sex. These bouts contribute to the production of diapausing eggs, which allows survival between growing seasons. Here, we studied two diapause-related traits in rotifers using clones from nine Brachionus plicatilis natural populations that vary in the degree of environmental unpredictability. We tested the hypothesis that …

0106 biological sciencesRotiferaZoologyGrowing seasonEnvironmentDiapause010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyLife history theoryGenetic variationAnimalsOvumGeneral Environmental ScienceLocal adaptationEcologyGeneral Immunology and MicrobiologybiologyHatchingReproduction010604 marine biology & hydrobiologyGeneral MedicineBrachionusbiology.organism_classificationBiological EvolutionDiapauseAdaptationGeneral Agricultural and Biological SciencesProceedings of the Royal Society B: Biological Sciences
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Stable coexistence of genetically divergent Atlantic cod ecotypes at multiple spatial scales

2018

Abstract Coexistence in the same habitat of closely related yet genetically different populations is a phenomenon that challenges our understanding of local population structure and adaptation. Identifying the underlying mechanisms for such coexistence can yield new insight into adaptive evolution, diversification and the potential for organisms to adapt and persist in response to a changing environment. Recent studies have documented cryptic, sympatric populations of Atlantic cod (Gadus morhua) in coastal areas. We analysed genetic origin of 6,483 individual cod sampled annually over 14 years from 125 locations along the Norwegian Skagerrak coast and document stable coexistence of two gene…

0106 biological sciencesSympatryGENOMIC DIVERGENCECHROMOSOMAL REARRANGEMENTSBiodiversityecotypes010603 evolutionary biology01 natural sciencessympatry/dk/atira/pure/sustainabledevelopmentgoals/life_below_waterLOCAL ADAPTATIONGeneticsGadusPOPULATION-STRUCTURESDG 14 - Life Below Waterdispersaltemporal genetic stabilityGADUS-MORHUA L.MARINE FISHESEcology Evolution Behavior and SystematicsEcotypebiologyEcology010604 marine biology & hydrobiologynatural selectionGROWTH-RATEOriginal Articlesbiology.organism_classificationSTATIONARY ECOTYPESNATURAL-SELECTIONNORTH-SEAHabitatSympatric speciationAtlantic codconnectivityBiological dispersalOriginal ArticleGeneral Agricultural and Biological SciencesAtlantic cod
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