Search results for " complement"

showing 10 items of 753 documents

c-Fos is required for excision repair of UV-light induced DNA lesions by triggering the re-synthesis of XPF

2006

Cells deficient in c-Fos are hypersensitive to ultraviolet (UV-C) light. Here we demonstrate that mouse embryonic fibroblasts lacking c-Fos (fos-/-) are defective in the repair of UV-C induced DNA lesions. They show a decreased rate of sealing of repair-mediated DNA strand breaks and are unable to remove cyclobutane pyrimidine dimers from DNA. A search for genes responsible for the DNA repair defect revealed that upon UV-C treatment the level of xpf and xpg mRNA declined but, in contrast to the wild type (wt), did not recover in fos-/- cells. The observed decline in xpf and xpg mRNA is due to impaired re-synthesis, as shown by experiments using actinomycin D. Block of xpf transcription resu…

DNA RepairUltraviolet RaysDNA repairDNA damageRNA StabilityGene ExpressionPyrimidine dimerBiologyCell LineMicechemistry.chemical_compoundTranscription (biology)Gene expressionGeneticsAnimalsDNA Breaks Single-StrandedRNA MessengerMolecular BiologyTranscription factorMice KnockoutGenetic Complementation TestGenes fosNuclear ProteinsDNAEndonucleasesMolecular biologyDNA-Binding ProteinsTranscription Factor AP-1chemistryPyrimidine DimersDNADNA DamageTranscription FactorsNucleotide excision repairNucleic Acids Research
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Ras-Related GTPase RhoB Forces Alkylation-Induced Apoptotic Cell Death

2000

rhoB encoding a Ras-related GTPase is immediate-early inducible by genotoxic treatments. To address the question of the physiological role of RhoB in cellular defense, cells stably overexpressing wild-type RhoB protein were generated. Overexpression of RhoB renders cells hypersensitive to the killing effect of alkylating agents including antineoplastic drugs but not to UV-light and doxorubicin. As compared to control cells, RhoB overexpressing cells revealed an increase in the frequency of alkylation-induced apoptotic cell death. This indicates that RhoB is involved in modulating apoptotic signaling. Furthermore, overexpression of RhoB resulted in a prolonged transient block to DNA replicat…

DNA ReplicationDNA ComplementaryAlkylationDNA RepairUltraviolet RaysRHOBBiophysicsApoptosisGTPaseBiologyTransfectionBiochemistryMicechemistry.chemical_compoundRhoB GTP-Binding ProteinmedicineAnimalsDoxorubicinrhoB GTP-Binding ProteinCytotoxicityAntineoplastic Agents AlkylatingMolecular BiologyDNA replication3T3 CellsCell BiologyMethyl MethanesulfonateRatsCell biologychemistryApoptosisCancer researchDNADNA Damagemedicine.drugBiochemical and Biophysical Research Communications
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Oxygen-Controlled Bacterial Growth in the Sponge Suberites domuncula: toward a Molecular Understanding of the Symbiotic Relationships between Sponge …

2004

ABSTRACT Sponges (phylum Porifera), known to be the richest producers among the metazoans of bioactive secondary metabolites, are assumed to live in a symbiotic relationship with microorganisms, especially bacteria. Until now, the molecular basis of the mutual symbiosis, the exchange of metabolites for the benefit of the other partner, has not been understood. We show with the demosponge Suberites domuncula as a model that the sponge expresses under optimal aeration conditions the enzyme tyrosinase, which synthesizes diphenols from monophenolic compounds. The cDNA isolated was used as a probe to determine the steady-state level of gene expression. The gene expression level parallels the lev…

DNA BacterialDNA ComplementaryOperonMicroorganismMolecular Sequence DataApplied Microbiology and BiotechnologyMicrobiologyMicrobial EcologyComplementary DNAGene clusterHydroxybenzoatesAnimalsAmino Acid SequenceSymbiosisGenePhylogenyEcologybiologyBacteriaBase SequenceSequence Homology Amino AcidMonophenol MonooxygenasePorphobilinogen Synthasebiology.organism_classificationPoriferaSuberites domunculaOxygenSpongeBiochemistryGenes BacterialMultigene FamilyBacteriaFood ScienceBiotechnology
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The long-term cytoskeletal rearrangement induced by rabbit enteropathogenic Escherichia coli is Esp dependent but intimin independent.

1999

Attaching and effacing rabbit enteropathogenic Escherichia coli (REPEC) of the O103 serogroup adhere diffusely on HeLa cells and trigger a slow progressive cytopathic effect (CPE) characterized by the recruitment of vinculin and the assembly of actin stress fibres. In contrast to REPEC O103, the reference human EPEC strain E2348/69 is unable to trigger the CPE. In this study, we have shown first that the fimbrial adhesin AF/R2, which mediates the diffuse adhesion of REPEC O103, was not sufficient to induce the CPE capability upon E2348/69. Non-polar mutants of REPEC O103 for espA, espB, espD and eae were then constructed. The four mutants were unable to induce attaching and effacing lesions…

DNA BacterialMutantMolecular Sequence DataMicrobiologyBacterial AdhesionMicrobiology03 medical and health sciencesBacterial ProteinsEscherichia coliAnimalsHumansEnteropathogenic Escherichia coliCytoskeletonAdhesins BacterialMolecular Biology[SDV.MP] Life Sciences [q-bio]/Microbiology and ParasitologyActinCytoskeleton030304 developmental biologyIntiminCytopathic effect0303 health sciencesAdhesins Escherichia colibiologyBase Sequence030306 microbiologyEscherichia coli ProteinsGenetic Complementation TestREARRANGEMENTbiochemical phenomena metabolism and nutritionVinculinBacterial adhesin[SDV.MP]Life Sciences [q-bio]/Microbiology and ParasitologyGenes Bacterialbiology.proteinRabbitsCarrier ProteinsBacterial Outer Membrane ProteinsHeLa CellsMolecular microbiology
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The disintegrin ADAM9 indirectly contributes to the physiological processing of cellular prion by modulating ADAM10 activity

2005

The cellular prion protein (PrP(c)) is physiologically cleaved in the middle of its 106-126 amino acid neurotoxic region at the 110/111 downward arrow112 peptidyl bond, yielding an N-terminal fragment referred to as N1. We recently demonstrated that two disintegrins, namely ADAM10 and ADAM17 (TACE, tumor necrosis factor alpha converting enzyme) participated in both constitutive and protein kinase C-regulated generation of N1, respectively. These proteolytic events were strikingly reminiscent of those involved in the so-called "alpha-secretase pathway" that leads to the production of secreted sAPPalpha from betaAPP. We show here, by transient and stable transfection analyses, that ADAM9 also…

DNA ComplementaryADAM10Gene ExpressionTransfectionBiochemistryDNA AntisenseCell LineAmyloid beta-Protein PrecursorMice03 medical and health sciences0302 clinical medicineEndopeptidasesDisintegrinAnimalsAspartic Acid EndopeptidasesHumansPrPC Proteins[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyProtein kinase AMolecular Biology030304 developmental biologyMice Knockout0303 health sciencesbiologyHEK 293 cells030302 biochemistry & molecular biologyMembrane ProteinsTransfectionCell BiologyFibroblastsPeptide FragmentsADAM ProteinsBiochemistryCell culturebiology.proteinAdditions and CorrectionsAmyloid Precursor Protein SecretasesADAM9Amyloid precursor protein secretase030217 neurology & neurosurgery
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Arginine kinase in the demosponge Suberites domuncula:regulation of its expression and catalytic activity by silicic acid

2005

SUMMARY In Demospongiae (phylum Porifera) the formation of the siliceous skeleton,composed of spicules, is an energetically expensive reaction. The present study demonstrates that primmorphs from the demosponge Suberites domuncula express the gene for arginine kinase after exposure to exogenous silicic acid. The deduced sponge arginine kinase sequence displays the two characteristic domains of the ATP:guanido phosphotransferases; it can be grouped to the `usual' mono-domain 40 kDa guanidino kinases (arginine kinases). Phylogenetic studies indicate that the metazoan guanidino kinases evolved from this ancestral sponge enzyme; among them are also the `unusual'two-domain 80 kDa guanidino kinas…

DNA ComplementaryArgininePhysiologyMolecular Sequence DataSilicic AcidAquatic ScienceCatalysisGene Expression Regulation EnzymologicEvolution Molecularchemistry.chemical_compoundDemospongeMicroscopy Electron TransmissionAnimalsCluster AnalysisAmino Acid SequenceNorthern blotSilicic acidMolecular BiologyIn Situ HybridizationPhylogenyEcology Evolution Behavior and Systematicschemistry.chemical_classificationBase SequencebiologyKinaseArginine KinaseSequence Analysis DNAArginine kinaseBlotting Northernbiology.organism_classificationPoriferaSuberites domunculaEnzymechemistryBiochemistryInsect Sciencebiology.proteinAnimal Science and ZoologySequence AlignmentJournal of Experimental Biology
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Ubiquitin and ubiquitination in cells from the marine sponge Geodia cydonium.

1994

Marine sponges, e.g. Geodia cydonium, have been intensively used to investigate the biochemical and molecular biological basis of cell-cell- and cell-matrix adhesion. It has been shown that a family of galactose-specific lectins, which are present in the extracellular space of G. cydonium, is a main component involved in cell-matrix adhesion in the sponge system. In the present study it is outlined that the purified 16-kDa lectin-1 binds to a 67-kDa membrane-associated protein. This lectin-binding protein undergoes mono- and diubiquitination after incubation of dissociated sponge cells with the homologous aggregation factor (AF), a molecule involved in cell-cell adhesion. The gene coding fo…

DNA ComplementaryBlotting WesternMolecular Sequence DataBiochemistryBiopolymersTandem repeatUbiquitinLectinsExtracellularCell AdhesionAnimalsAmino Acid SequenceRNA MessengerPolyubiquitinGeneUbiquitinsCells CulturedMessenger RNAbiologyBase SequenceSequence Homology Amino AcidChemistryMembrane ProteinsAdhesionbiology.organism_classificationBlotting NorthernCell biologyPoriferaSpongeGene Expression Regulationbiology.proteinFunction (biology)Biological chemistry Hoppe-Seyler
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Cloning and expression of the putative aggregation factor from the marine sponge Geodia cydonium.

2001

Sponges (phylum Porifera) have extensively been used as a model system to study cell-cell interaction on molecular level. Recently, we identified and cloned the putative aggregation receptor (AR) of the sponge Geodia cydonium, which interacts in a heterophilic way with the aggregation factor (AF) complex. In the present study, antibodies against this complex have been raised that abolish the adhesion function of the enriched sponge AF, the AF-Fraction 6B. Using this antibody as a tool, a complete 1.7 kb long cDNA, GEOCYAF, could be isolated from a cDNA library that encodes the putative AF. Its deduced aa sequence in the N-terminal section comprises high similarity to amphiphysin/BIN1 sequen…

DNA ComplementaryBlotting WesternMolecular Sequence DataBiologyModels BiologicalSH3 domainAntibodieslaw.inventionEvolution Molecularsrc Homology DomainslawComplementary DNACell AdhesionEscherichia coliAnimalsAmino Acid SequenceBinding siteCloning MolecularPhylogenyGalectinCell AggregationGene LibraryCloningDose-Response Relationship DrugSequence Homology Amino AcidcDNA libraryCell MembraneCell BiologySequence Analysis DNAMolecular biologyRecombinant ProteinsPoriferaProtein Structure TertiaryAmphiphysinRecombinant DNAPeptidesCell Adhesion MoleculesProtein BindingJournal of cell science
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Identification of target antigen for SLA/LP autoantibodies in autoimmune hepatitis.

2000

Summary Background Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis, but no standardised assays are available. Methods We tested 2000 serum samples from patients with various liver diseases and controls for SLA autoantibodies by inhibition ELISA. Serum samples positive for SLA antibodies were used for immunoscreening of cDNA expression libraries. Identified clones were tested against a panel of serum samples positive for SLA and LP autoantibodies and control seru…

DNA ComplementaryBlotting WesternMolecular Sequence DataSequence HomologyEnzyme-Linked Immunosorbent AssayAutoimmune hepatitisBiologyAutoantigensEpitopeEpitopesPrimary biliary cirrhosisAntigenmedicineHumansLymphocytesPancreasAutoantibodiesAutoimmune diseaseHepatitisBase SequencefungiAutoantibodyGeneral Medicinemedicine.diseaseVirologyHepatitis AutoimmuneLiverImmunologybiology.proteinAntibodyLancet (London, England)
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Digital image processing for rapid analysis of differentially expressed transcripts on high-density cDNA arrays.

1999

Usage of filter arrays is becoming increasingly attractive for many research laboratories involved in determination of gene-expression profiles. However, analysis of numerous spots, representing genes or partial gene sequences (ESTs), is still tedious work involving the ordered analysis of vast amounts of numerical tabular data. We present a rapid and efficient method for the visual identification of differentially expressed targets on high-density cDNA filter arrays using standard laboratory equipment and standard software, which is available for free. The method we introduce provides an inexpensive alternative, and no changes in the experimental set up are required. Our results were veri…

DNA ComplementaryCDNA ArraysTranscription Geneticbusiness.industryHigh densityColorGene ExpressionComputational biologyVisual identificationBiologyBioinformaticsGeneral Biochemistry Genetics and Molecular BiologySet (abstract data type)SoftwareFilter (video)Complementary DNADigital image processingImage Processing Computer-AssistedAutoradiographyCloning MolecularbusinessSoftwareBiotechnologyDensitometryBioTechniques
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