Search results for " composition"

showing 10 items of 1437 documents

Mucilaginibacter frigoritolerans sp. nov., Mucilaginibacter lappiensis sp. nov. and Mucilaginibacter mallensis sp. nov., isolated from soil and liche…

2010

Five cold-adapted bacteria belonging to the genus Mucilaginibacter were isolated from lichen and soil samples collected from Finnish Lapland and investigated in detail by phenotypic and phylogenetic analyses. Based on 16S rRNA gene phylogeny, the novel strains represent three new branches within the genus Mucilaginibacter. The strains were aerobic, chemo-organotrophic, non-motile rods and formed pigmented, smooth, mucoid colonies on solid media. The strains grew between 0 and 33 °C (optimum growth at 25 °C) and at pH 4.5–8.0 (optimum growth at pH 6.0). The main cellular fatty acids were iso-C15 : 0, summed feature 3 (C16 : 1 ω7c/iso-C15 : 0 2-OH) and iso-C17 : 0 3-OH and the major respirato…

DNA BacterialMucilaginibacter frigoritoleransfood.ingredientLichensMolecular Sequence DataBiologymedicine.disease_causeMicrobiologyMicrobiologyfoodPhylogeneticsRNA Ribosomal 16SBotanymedicineLichenEcology Evolution Behavior and SystematicsFinlandPhylogenySoil MicrobiologyBase CompositionMucilaginibacter mallensisPhylogenetic treeBacteroidetesFatty AcidsMucilaginibacterVitamin K 2General MedicineSequence Analysis DNA16S ribosomal RNABacterial Typing TechniquesMucilaginibacter lappiensisInternational journal of systematic and evolutionary microbiology
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Neptuniibacter caesariensis gen. nov., sp. nov., a novel marine genome-sequenced gammaproteobacterium.

2007

7 pages, 1 figure, 1 table

DNA BacterialOceanospirillaceaeSequence analysisMovementMolecular Sequence DataCarboxylic AcidsZoologyAlteromonadaceaeMicrobiologyDNA RibosomalMicrobiologyMembrane LipidsPhylogeneticsRNA Ribosomal 16SSequence Homology Nucleic AcidMediterranean SeaSeawaterAmino AcidsEcology Evolution Behavior and SystematicsPhylogenyBase CompositionbiologyPhylogenetic treeAlteromonadaceaeFatty AcidsGenes rRNAGeneral MedicineSequence Analysis DNARibosomal RNAbiology.organism_classification16S ribosomal RNAHalophileBacterial Typing TechniquesRNA BacterialOceanospirillaceaeGammaproteobacteriaGenome BacterialInternational journal of systematic and evolutionary microbiology
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Diversity of chlorophenol-degrading bacteria isolated from contaminated boreal groundwater

1999

Chlorophenol-degrading bacteria from a long-term polluted groundwater aquifer were characterized. All isolates degraded 2,4,6-trichlorophenol and 2,3,4,6-tetrachlorophenol at concentrations detected in the contaminated groundwater (10 mg 1(-1)). Pentachlorophenol was degraded by three isolates when present alone. In two gram-positive isolates, 2,3,4,6-tetrachlorophenol was required as an inducer for the degradation of pentachlorophenol. The gram-positive isolates were sensitive to pentachlorophenol, with an IC50 value of 5 mg/l. Isolates belonging to the Cytophaga/Flexibacter/Bacteroides phylum had IC50 values of 25 and 63 mg/l. Isolates belonging to alpha-, beta- and gamma-Proteobacteria g…

DNA BacterialPentachlorophenolfood.ingredientCaulobacterMolecular Sequence DataFresh WaterAquiferGram-Positive BacteriaBiochemistryMicrobiologyMicrobiology03 medical and health sciencesfoodRalstoniaRNA Ribosomal 16SGram-Negative BacteriaGeneticsMolecular BiologyPhylogeny030304 developmental biologyBase Composition0303 health sciencesgeographygeography.geographical_feature_categoryBacteriabiology030306 microbiologyPseudomonasNocardioidesGenetic VariationGeneral Medicinebiology.organism_classification6. Clean waterBiodegradation EnvironmentalEnvironmental chemistryWater MicrobiologyPolymorphism Restriction Fragment LengthWater Pollutants ChemicalBacteriaGroundwaterFlavobacteriumChlorophenolsArchives of Microbiology
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Vibrio renipiscarius sp. nov., isolated from cultured gilthead sea bream (Sparus aurata)

2015

Two strains of Gram-negative, facultatively anaerobic, slightly halophilic bacteria, isolated from healthy gilthead sea bream (Sparus aurata) cultured in Spanish Mediterranean fish farms, were different from their closest relatives,Vibrio scophthalmiandV. ichthyoenteri, by phenotypic, phylogenetic and genomic standards. The strains were negative for decarboxylase tests and lacked extracellular hydrolytic activities, but were able to fermentd-mannitol, sucrose, cellobiose andd-gluconate, among other carbohydrates. The major cellular fatty acids were C16:1and C16:0, in agreement with other species of the genusVibrio. Their 16S rRNA gene sequences were 98.4 and 97.2 % similar to those of the t…

DNA BacterialSequence analysisMolecular Sequence DataBiologyMicrobiologyMicrobiologyBacterial geneticsPhylogeneticsRNA Ribosomal 16SAnimalsGenePhylogenyEcology Evolution Behavior and SystematicsVibrioBase CompositionPhylogenetic treeFatty AcidsNucleic Acid HybridizationSequence Analysis DNAGeneral MedicineRibosomal RNA16S ribosomal RNASea BreamBacterial Typing TechniquesHousekeeping geneGenes BacterialSpainInternational Journal of Systematic and Evolutionary Microbiology
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Euzebyella saccharophila gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae.

2010

Strain 7SM30T , an aerobic marine, Gram-negative, heterotrophic and yellow- to orange-pigmented bacterium isolated from seawater from Castellón, Spain, was characterized using a polyphasic approach. Analysis of the 16S rRNA gene sequence showed that the isolate represented a novel lineage within the family Flavobacteriaceae. The most closely related genera were Pseudozobellia, Zobellia and Kriegella. Cells of strain 7SM30T were non-motile rods that required sea salts for growth, used a wide variety of carbohydrates as sole carbon and energy sources and, unlike species of the genera Pseudozobellia and Zobellia, did not possess flexirubin-type pigment or hydrolyse agar. Strain 7SM30T containe…

DNA BacterialSequence analysisMolecular Sequence DataEMENDED DESCRIPTIONMicrobiologyMicrobiologyPhylogeneticsRNA Ribosomal 16SSeawaterEcology Evolution Behavior and SystematicsPhylogenyBase CompositionbiologyPigmentationPhosphatidylethanolaminesTAXAFatty AcidsVitamin K 2General MedicineSequence Analysis DNARibosomal RNAbiology.organism_classification16S ribosomal RNAFlavobacteriaceaeBacterial Typing TechniquesType speciesSpainEnergy sourceFlavobacteriaceaeBacteriaInternational journal of systematic and evolutionary microbiology
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Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes.

2009

The central clade of the genus Vibrio, also called the Vibrio core group, comprises six species that are tightly related (DNA–DNA reassociation values are very close to 70 % for most species pairs). Identification of novel strains to the species level within this group is troublesome and results are quite often dependent on the methodology employed. Therefore, this group represents an excellent framework to test the robustness of multilocus sequence analysis (MLSA) not only for inferring phylogeny but also as an identification tool without the need for DNA–DNA hybridization assays. The genes selected, 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR, were amplified by direct PCR from 44 Vibr…

DNA BacterialSequence analysisMolecular Sequence DataSigma FactorBiologyMicrobiologyBacterial ProteinsPhylogeneticsVibrionaceaeTransferasesRNA Ribosomal 16SCladeGeneEcology Evolution Behavior and SystematicsPhylogenyVibrioGeneticsBase CompositionGeneral MedicineSequence Analysis DNARibosomal RNA16S ribosomal RNAbiology.organism_classificationVibrioDNA-Binding ProteinsRec A RecombinasesDNA GyraseTranscription FactorsInternational journal of systematic and evolutionary microbiology
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Tropicibacter multivorans sp. nov., an aerobic alphaproteobacterium isolated from surface seawater.

2011

Strain MD5T, an aerobic marine alphaproteobacterium, was isolated from Mediterranean seawater at Malvarrosa beach, Valencia, Spain. The strain was characterized in a polyphasic study and was placed phylogenetically within the Roseobacter clade in the family Rhodobacteraceae . Phylogenetic analysis based on 16S rRNA gene sequences showed that strain MD5T is related to Tropicibacter naphthalenivorans C02T, Phaeobacter inhibens T5T, P. gallaeciensis BS107T and P. daeponensis TF-218T, with 96.9, 96.2, 96.1 and 96.1 % sequence similarity, respectively. Phylogenetic analyses also showed that strain MD5T forms a stable clade only with T. naphthalenivorans C02T. Strain MD5T requires Na+ plus a diva…

DNA BacterialUbiquinoneMolecular Sequence DataMicrobiologyMicrobiologyAesculinchemistry.chemical_compoundPhylogeneticsRNA Ribosomal 16SMediterranean SeaSeawaterRhodobacteraceaeRhodobacteraceaeEcology Evolution Behavior and SystematicsPhylogenyBase CompositionbiologyStrain (chemistry)Fatty AcidsAcid phosphataseGeneral MedicineSequence Analysis DNARibosomal RNARoseobacter16S ribosomal RNAbiology.organism_classificationBacterial Typing TechniquesBiochemistrychemistrySpainbiology.proteinInternational journal of systematic and evolutionary microbiology
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Phytochemical Constituents, Antioxidant Activity, and Toxicity Assessment of the Aerial Part Extracts from the Infraspecific Taxa of Matthiola frutic…

2021

In a project designed to investigate the specific and infraspecific taxa of Matthiola endemic to Sicily (Italy) as new potential sources of bioactive compounds in this work, the infraspecific taxa of Matthiola fruticulosa were studied, namely, subsp. fruticulosa and subsp. coronopifolia. HPLC–PDA/ESI–MS and SPME–GC/MS analyses of hydroalcoholic extracts obtained from the aerial parts of the two subspecies led to the detection of 51 phenolics and 61 volatile components, highlighting a quite different qualitative–quantitative profile. The antioxidant properties of the extracts were explored through in vitro methods: 1,1-diphenyl-2-picrylhydrazyl (DPPH), reducing power and Fe2+ chelating activ…

DPPHPharmaceutical Sciencebiological activityBrine shrimpMatthiolaSubspecies01 natural sciencesAnalytical Chemistry03 medical and health scienceschemistry.chemical_compoundQD241-441Biological activity; Chemical composition; Matthiola fruticulosa; Native plants; Natural resource; Sicily; Animals; Antioxidants; Artemia; Brassicaceae; Larva; Phytochemicals; Plant Extracts; Sicily; Toxicity Tests.Drug Discoverychemical compositionBioassaySettore BIO/15 - Biologia FarmaceuticaPhysical and Theoretical ChemistrySicily030304 developmental biology0303 health sciencesbiologyTraditional medicineSettore BIO/02 - Botanica Sistematica<i>Matthiola fruticulosa</i>Organic ChemistryBrassicaceaenative plantsnative plantbiology.organism_classificationnatural resource0104 chemical sciences010404 medicinal & biomolecular chemistrychemistryPhytochemicalChemistry (miscellaneous)Matthiola fruticulosaMolecular MedicineArtemia salinaMolecules
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Physical activity volume and intensity distribution in relation to bone, lean and fat mass in children.

2022

Funder: City of Kuopio

DXAMaleluustoadipositypediatricsMovementlapset (ikäryhmät)Physical Therapy Sports Therapy and RehabilitationliikuntaBone and BonesAbsorptiometry PhotonBone DensityaccelerometryBody CompositionlihavuusHumansOrthopedics and Sports MedicineFemaleintensity gradientChildExercisefyysinen aktiivisuusbone mineral contentlastentaudit
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Comparison of body segment models for female high jumpers utilising DXA images

2022

In motion analysis of sport competitions, the question is often about the most convenient choice for defining the segment endpoints when no visible landmarks can be used. The purpose of the present study was to determine the location of the body centre of mass (CoM) of female high jumpers by using a high accuracy reaction board and two different segment models: Dempster, 1955, de Leva, 1996. Digitising the bony landmarks from the images of dual energy x-ray absorptiometry (DXA) and overhead digital camera were used to compare the digitising accuracy. The location of the CoM determined by a reaction board was 55.88 ± 0.52 % of subjects’ body height. The segment model of Dempster digitized fr…

DXAkorkeushyppypainopistesegment inertial parametersmotion analysisRehabilitationBiomedical EngineeringBiophysicsruumismassakeskipistereaktiivisuusBody HeightkehokorkeushyppääjätAbsorptiometry PhotonReference Valuesbody center of massBody CompositionHumansOrthopedics and Sports MedicineFemaleliikeanalyysiurheilukilpailutreaction boardurheilijat
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