Search results for " data"
showing 10 items of 7516 documents
Specimens at the Center: An Informatics Workflow and Toolkit for Specimen-level analysis of Public DNA database data
2016
Pham, Kasey K. [et al.]
Comparative Mitogenomics of Leeches (Annelida: Clitellata): Genome Conservation and Placobdella-Specific trnD Gene Duplication.
2015
Mitochondrial DNA sequences, often in combination with nuclear markers and morphological data, are frequently used to unravel the phylogenetic relationships, population dynamics and biogeographic histories of a plethora of organisms. The information provided by examining complete mitochondrial genomes also enables investigation of other evolutionary events such as gene rearrangements, gene duplication and gene loss. Despite efforts to generate information to represent most of the currently recognized groups, some taxa are underrepresented in mitochondrial genomic databases. One such group is leeches (Annelida: Hirudinea: Clitellata). Herein, we expand our knowledge concerning leech mitochon…
Ecological plant epigenetics: Evidence from model and non-model species, and the way forward
2017
Growing evidence shows that epigenetic mechanisms contribute to complex traits, with implications across many fields of biology. In plant ecology, recent studies have attempted to merge ecological experiments with epigenetic analyses to elucidate the contribution of epigenetics to plant phenotypes, stress responses, adaptation to habitat, and range distributions. While there has been some progress in revealing the role of epigenetics in ecological processes, studies with non-model species have so far been limited to describing broad patterns based on anonymous markers of DNA methylation. In contrast, studies with model species have benefited from powerful genomic resources, which contribute…
Evaluation of the DNA barcoding approach to develop a reference data-set for the threatened flora of Sicily
2014
The Mediterranean Basin is one of the most significantly altered World Biodiversity Hotspots with extensive habitat loss and fast genetic population erosion, for which urgent biodiversity reconnaissance and preservation actions are required. In particular, Sicily has about 600 taxa classified as threatened or near-threatened. The correct recognition and identification of such biodiversity is required for supporting further activities. The objective of this work is to assess the ability of the DNA barcoding approach to identify different taxonomic groups from a collection of the most threatened plant taxa, throughout natural Sicilian populations. The evaluation of the DNA barcoding core mark…
Isolation of acetic, propionic and butyric acid-forming bacteria from biogas plants.
2015
In this study, acetic, propionic and butyric acid-forming bacteria were isolated from thermophilic and mesophilic biogas plants (BGP) located in Germany. The fermenters were fed with maize silage and cattle or swine manure. Furthermore, pressurized laboratory fermenters digesting maize silage were sampled. Enrichment cultures for the isolation of acid-forming bacteria were grown in minimal medium supplemented with one of the following carbon sources: Na(+)-dl-lactate, succinate, ethanol, glycerol, glucose or a mixture of amino acids. These substrates could be converted by the isolates to acetic, propionic or butyric acid. In total, 49 isolates were obtained, which belonged to the phyla Firm…
Notulae to the Italian alien vascular flora: 5
2018
In this contribution, new data concerning the distribution of vascular flora alien to Italy are presented. It includes new records, and confirmations for Italy or for Italian administrative regions of taxa in the genera Albizia, Anredera, Bougainvillea, Cardamine, Cenchrus, Cephalaria, Ceratochloa, Cytisus, Datura, Delosperma, Euonymus, Freesia, Hylotelephium, Lantana, Musa, Physalis, Rotala, Styphnolobium, Trachycarpus, and Tradescantia. Nomenclature and distribution updates, published elsewhere, and corrections are provided as supplementary material.
Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 4
2017
In this contribution, new data concerning bryophytes, fungi and lichens of the Italian flora are presented. It includes new records and confirmations for the bryophyte generaCampylopus,Paludella,Tortula, andConocephalum, the fungal generaAgonimia,Buelliella,Entorrhiza,Filicupula,Poronia, andSporisorium, the lichen generaCladonia,Dibaeis,Lasallia, andRhizocarpon.
Notulae to the Italian native vascular flora: 1
2016
In this contribution, new data concerning the Italian distribution of native vascular flora are presented. It includes new records, exclusions, and confirmations pertaining to the Italian administrative regions for taxa in the genera Arundo, Bromopsis, Cistus, Crocus, Festuca, Galeopsis, Genista, Lamium, Leucanthemum, Nerium, Orobanche, Peucedanum, Pilosella, Polycnemum, Stipa and Viola.
Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 3
2017
In this contribution, new data concerning bryophytes, fungi and lichens and of the Italian flora are presented. It includes new records and confirmations for the bryophyte generaDicranodontium,Fontinalis,LophocoleaandRiccia, the fungal genusDiplolaeviopsis, the lichen generaAgonimia,Cladonia,Protoparmelia,Rhizocarpon, andScytinium.
The legacy of a vanished sea: a high level of diversification within a European freshwater amphipod species complex driven by 15 My of Paratethys reg…
2016
16 pages; International audience; The formation of continental Europe in the Neogene was due to the regression of the Tethys Ocean and of the Paratethys Sea. The dynamic geology of the area and repetitious transitions between marine and freshwater conditions presented opportunities for the colonization of newly emerging hydrological networks and diversification of aquatic biota. Implementing mitochondrial and nuclear markers in conjunction with a large-scale sampling strategy, we investigated the impact of this spatiotemporal framework on the evolutionary history of a freshwater crustacean morphospecies. The Gammarus balcanicus species complex is widely distributed in the area previously oc…