Search results for " data"

showing 10 items of 7516 documents

The Bias of combining variables on fish's aggressive behavior studies.

2019

Made available in DSpace on 2019-10-06T16:27:42Z (GMT). No. of bitstreams: 0 Previous issue date: 2019-07-01 Quantifying animal aggressive behavior by behavioral units, either displays or attacks, is a common practice in animal behavior studies. However, this practice can generate a bias in data analysis, especially when the variables have different temporal patterns. This study aims to use Bayesian Hierarchical Linear Models (B-HLMs) to analyze the feasibility of pooling the aggressive behavior variables of four cichlids species. Additionally, this paper discusses the feasibility of combining variables by examining the usage of different sample sizes and family distributions to aggressive …

0106 biological sciencesBayesian probabilityPosterior probabilityBayesian analysisPoisson distribution010603 evolutionary biology01 natural sciencesBehavioral Neurosciencesymbols.namesakeBiasPrior probabilityStatisticsAnimals0501 psychology and cognitive sciences050102 behavioral science & comparative psychologyPterophyllum scalareMathematicsProbabilitybiologyBehavior Animal05 social sciencesMultilevel modelBayes TheoremGeneral MedicineCichlidsbiology.organism_classificationAggressive behaviourMarkov ChainsAggressionVariable (computer science)Sample size determinationData Interpretation StatisticalsymbolsAnimal Science and ZoologyPooled dataMonte Carlo MethodBehavioural processes
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GrassPlot – a database of multi-scale plant diversity in Palaearctic grasslands

2018

GrassPlot is a collaborative vegetation-plot database organised by the Eurasian Dry Grassland Group (EDGG) and listed in the Global Index of Vegetation-Plot Databases (GIVD ID EU-00-003). GrassPlot collects plot records (relevés) from grasslands and other open habitats of the Palaearctic biogeographic realm. It focuses on precisely delimited plots of eight standard grain sizes (0.0001; 0.001; ... 1,000 m²) and on nested-plot series with at least four different grain sizes. The usage of GrassPlot is regulated through Bylaws that intend to balance the interests of data contributors and data users. The current version (v. 1.00) contains data for approximately 170,000 plots of different sizes a…

0106 biological sciencesBiodiversityPlant Sciencecomputer.software_genre01 natural sciencesGrasslandSAMPLING-DESIGNRICHNESSEcoinformaticsddc:550biodiversity; European Vegetation Archive (EVA); Eurasian Dry Grassland Group (EDGG); grassland vegetation; GrassPlot; macroecology; multi-taxon; nested plot; scale-dependence; species-area relationship (SAR); sPlot; vegetation-plot databasescale-dependenceMacroecologybiodiversity2. Zero hungerSCALE DEPENDENCEgeography.geographical_feature_categoryDatabaseVegetationspecies-area relationship (SAR)Grasslandnested plotGeographymacroecologyInstitut für GeowissenschaftenEurasian Dry Grassland Group (EDGG)vegetation-plot database.EUROPEGrassPlotbiodiversity ; European Vegetation Archive (EVA) ; Eurasian Dry Grassland Group (EDGG) ; grassland vegetation ; GrassPlot ; macroecology ; multi-taxon ; nested plot scale-dependence ; species-area relationship (SAR) ; sPlot ; vegetation-plot database010603 evolutionary biologyEcoinformaticsmulti-taxon577: ÖkologieMETAANALYSISENVIRONMENTData collectionsPlotgrass- land vegetationDRY GRASSLANDSgrassland vegetationvegetation-plot database15. Life on landbiodiversity • European Vegetation Archive (EVA) • Eurasian Dry Grassland Group (EDGG) • grassland vegetation • GrassPlot • macroecology • multi-taxon • nested plot • scale-dependence • species-area relationship (SAR) • sPlot • vegetation-plot databaseMetadataPATTERNSSPECIES-AREA RELATIONSHIPSNested plot scale-dependenceVEGETATIONSpecies richnesscomputerbiodiversity; European Vegetation Archive (EVA); Eurasian Dry Grassland Group (EDGG); grassland vegetation; GrassPlot; macroecology; multi-taxon; nested plot scale-dependence; species-area relationship (SAR); sPlot; vegetation-plot database.010606 plant biology & botanyEuropean Vegetation Archive (EVA)
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Extinction and recolonization of maritime Antarctica in the limpet Nacella concinna (Strebel, 1908) during the last glacial cycle: toward a model of …

2013

Quaternary glaciations in Antarctica drastically modified geographical ranges and population sizes of marine benthic invertebrates and thus affected the amount and distribution of intraspecific genetic variation. Here, we present new genetic information in the Antarctic limpet Nacella concinna, a dominant Antarctic benthic species along shallow ice-free rocky ecosystems. We examined the patterns of genetic diversity and structure in this broadcast spawner along maritime Antarctica and from the peri-Antarctic island of South Georgia. Genetic analyses showed that N. concinna represents a single panmictic unit in maritime Antarctic. Low levels of genetic diversity characterized this population…

0106 biological sciencesBiogeographyClimate ChangePopulationGastropodaMolecular Sequence DataPopulation DynamicsAntarctic RegionsBiologyExtinction Biological010603 evolutionary biology01 natural sciencesDNA Mitochondrial03 medical and health sciencesGeneticsDeglaciationAnimals14. Life underwaterGlacial periodeducationEcology Evolution Behavior and Systematics030304 developmental biology0303 health sciencesGenetic diversityeducation.field_of_studyExtinctionEcologyfungiGenetic VariationBayes TheoremSequence Analysis DNA15. Life on landGenetics PopulationHaplotypesBenthic zoneQuaternarygeographic locationsMolecular ecology
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sPlotOpen – An environmentally balanced, open‐access, global dataset of vegetation plots

2021

Datos disponibles en https://github.com/fmsabatini/sPlotOpen_Code

0106 biological sciencesBiomeBos- en LandschapsecologieBiodiversityDIVERSITYFOREST VEGETATION01 natural sciences//purl.org/becyt/ford/1 [https]http://aims.fao.org/aos/agrovoc/c_915Abundance (ecology)big dataVegetation typePHYTOSOCIOLOGICAL DATABASEparcelleForest and Landscape Ecologyfunctional traitsvascular plantsbig data; biodiversity; biogeography; database; functional traits; macroecology; vascular plants; vegetation plotsbig data ; biodiversity ; biogeography ; database ; functional traits ; macroecology ; vascular plants ; vegetation plotsMacroecologyhttp://aims.fao.org/aos/agrovoc/c_3860databasebiodiversity[SDV.EE]Life Sciences [q-bio]/Ecology environmentGlobal and Planetary ChangeEcologyEcologyhttp://aims.fao.org/aos/agrovoc/c_33949vascular plantVegetationF70 - Taxonomie végétale et phytogéographiePE&RCVegetation plotGeography580: Pflanzen (Botanik)Ecosystems Researchhttp://aims.fao.org/aos/agrovoc/c_25409Diffusion de l'informationmacroecologyPlantenecologie en NatuurbeheerVegetatie Bos- en LandschapsecologieBiodiversitéARCHIVECommunauté végétalehttp://aims.fao.org/aos/agrovoc/c_24420Evolutionhttp://aims.fao.org/aos/agrovoc/c_fdfbb37f[SDE.MCG]Environmental Sciences/Global ChangesBiogéographieGRASSLAND VEGETATIONPlant Ecology and Nature Conservation[SDV.BID]Life Sciences [q-bio]/Biodiversity010603 evolutionary biologyBehavior and SystematicsCouverture végétale577: ÖkologiePLANThttp://aims.fao.org/aos/agrovoc/c_8176//purl.org/becyt/ford/1.6 [https]/dk/atira/pure/core/keywords/biologyfunctional traitBiologyEcology Evolution Behavior and SystematicsVegetatiebiogeographyVegetation010604 marine biology & hydrobiology/dk/atira/pure/core/keywords/559922418Impact sur l'environnementDRY GRASSLANDSPlant community15. Life on landVégétationWETLAND VEGETATIONhttp://aims.fao.org/aos/agrovoc/c_45b5a34avegetation plotsEarth and Environmental SciencesUNIVERSITYPhysical geographyVegetation Forest and Landscape Ecology[SDE.BE]Environmental Sciences/Biodiversity and Ecologydonnées ouverteshttp://aims.fao.org/aos/agrovoc/c_32514Global and Planetary Change
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Characterization of MRNP34, a novel methionine-rich nacre protein from the pearl oysters

2012

9 pages; International audience; Nacre of the Pinctada pearl oyster shells is composed of 98% CaCO(3) and 2% organic matrix. The relationship between the organic matrix and the mechanism of nacre formation currently constitutes the main focus regarding the biomineralization process. In this study, we isolated a new nacre matrix protein in P. margaritifera and P. maxima, we called Pmarg- and Pmax-MRNP34 (methionine-rich nacre protein). MRNP34 is a secreted hydrophobic protein, which is remarkably rich in methionine, and which is specifically localised in mineralizing the epithelium cells of the mantle and in the nacre matrix. The structure of this protein is drastically different from those …

0106 biological sciencesBiomineralizationCalcifying mantleMethionine-richMolecular Sequence DataClinical BiochemistryGene ExpressionBiologyMatrix (biology)engineering.materialProteomics010603 evolutionary biology01 natural sciencesBiochemistryLow complexity03 medical and health sciencesPaleontologychemistry.chemical_compoundCalcification PhysiologicMethionineAnimalsAmino Acid SequencePinctada[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsNacre030304 developmental biology0303 health sciencesMethionineViral matrix proteinOrganic ChemistryProteinsEpithelial Cells[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterialsbiology.organism_classificationProtein Structure TertiarychemistryBiochemistryengineeringMolluscMatrix proteinPearlBiomineralizationPinctada
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EUNIS Habitat Classification: Expert system, characteristic species combinations and distribution maps of European habitats

2020

Aim The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation-plot records to the habitats of the EUNIS system, use it to classify a European vegetation-plot database, and compile statistically-derived characteristic species combinations and distribution maps for these habitats. Location Europe. Methods We developed the classification expert system EUNIS-ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each ha…

0106 biological sciencesBos- en Landschapsecologiecoastal habitat ; diagnostic species ; distribution map ; dune vegetation European Nature Information System (EUNIS) ; European Vegetation Archive (EVA) ; expert system ; forest ; grassland ; habitat classification ; man-made habitat ; shrubland ; vegetation database ; vegetation plot ; wetlandBiodiversityDistribution (economics)Wetlandcomputer.software_genre01 natural sciencesGrasslandforestman-made habitatForest and Landscape EcologyPlant ecologybiodiversitygeography.geographical_feature_categoryEcologyVegetationPE&RCwetlandEuropeGeographyHabitathabitat classificationVegetatie Bos- en LandschapsecologieEuropaEuropean Nature Information System (EUNIS)Cartographydune vegetationvegetation plotHabitat (Ecology)databasescoastal habitat; diagnostic species; distribution map; dune vegetation; European Nature Information System (EUNIS); European Vegetation Archive (EVA); expert system; forest; grassland; habitat classification; man-made habitat; shrubland; vegetation database; vegetation plot; wetlandHàbitat (Ecologia)Management Monitoring Policy and Law010603 evolutionary biologyShrublanddistribution mapvegetationinvasionsvegetation database14. Life underwatercoastal habitat577: ÖkologieVegetatieNature and Landscape Conservationexpert systemforestsVegetationbusiness.industryEcologia vegetalwetland formalized classificationalien plants15. Life on landExpert systemfidelitydiagnostic speciesexampleVegetation Forest and Landscape Ecologygrassland[SDE.BE]Environmental Sciences/Biodiversity and Ecologybusinessman‐made habitatshrublandcomputer010606 plant biology & botanyEuropean Vegetation Archive (EVA)
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Selection for Robustness in Mutagenized RNA Viruses

2007

Mutational robustness is defined as the constancy of a phenotype in the face of deleterious mutations. Whether robustness can be directly favored by natural selection remains controversial. Theory and in silico experiments predict that, at high mutation rates, slow-replicating genotypes can potentially outcompete faster counterparts if they benefit from a higher robustness. Here, we experimentally validate this hypothesis, dubbed the ‘‘survival of the flattest,’’ using two populations of the vesicular stomatitis RNA virus. Characterization of fitness distributions and genetic variability indicated that one population showed a higher replication rate, whereas the other was more robust to mut…

0106 biological sciencesCancer ResearchMutation ratelcsh:QH426-470In silicoMolecular Sequence DataPopulationBiologyVirus Replication010603 evolutionary biology01 natural sciencesVesicular stomatitis Indiana virusCell Line03 medical and health sciences0302 clinical medicineVirologyCricetinaeGeneticsAnimalsHumansSelection GeneticeducationMolecular BiologyGenetics (clinical)Ecology Evolution Behavior and Systematics030304 developmental biologyGeneticsEvolutionary Biology0303 health scienceseducation.field_of_studyNatural selectionRobustness (evolution)Genetics and GenomicsRNA virusbiology.organism_classification3. Good healthlcsh:GeneticsViral replicationMutagenesisViral evolutionViruses030217 neurology & neurosurgeryResearch ArticleHeLa Cells
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Negligible effect of hypolimnetic oxygenation on the trophic state of Lake Jyväsjärvi, Finland

2016

Abstract Hypolimnetic oxygenation by pumping oxygen-rich surface water to the hypolimnion (HLO) is a commonly used tool for the restoration of nutrient-loaded dimictic lakes. However, in recent years its effectiveness has been questioned. In this case study we evaluated monitoring data covering a period of 23-years to show that, although experimental cessation of HLO drastically changed the lake's temperature and dissolved oxygen regimes, it did not significantly affect its trophic status. Thus, we recommend that the limited financial resources available are better directed towards further lowering the lake's external phosphorus load than continuing HLO.

0106 biological sciencesChlorophyll aChlorophyll ata1172chemistry.chemical_elementyear-round oxygenation010501 environmental sciencesAquatic Science01 natural scienceschemistry.chemical_compoundNutrientnutrientsautomated monitoring0105 earth and related environmental sciencesTrophic levelHydrology010604 marine biology & hydrobiologyPhosphorusOxygenationchemistryMonitoring datadissolved oxygenEnvironmental scienceta1181HypolimnionSurface waterLimnologica
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Assessing sampling coverage of species distribution in biodiversity databases

2019

Abstract Aim Biodiversity databases are valuable resources for understanding plant species distributions and dynamics, but they may insufficiently represent the actual geographic distribution and climatic niches of species. Here we propose and test a method to assess sampling coverage of species distribution in biodiversity databases in geographic and climatic space. Location Europe. Methods Using a test selection of 808,794 vegetation plots from the European Vegetation Archive (EVA), we assessed the sampling coverage of 564 European vascular plant species across both their geographic ranges and realized climatic niches. Range maps from the Chorological Database Halle (CDH) were used as bac…

0106 biological sciencesChorological Database Halle (CDH)Range (biology)multi-scale[SDE.MCG]Environmental Sciences/Global Changesvegetation-plot databasesSpecies distributionPlant Science[SDV.BID]Life Sciences [q-bio]/Biodiversitycomputer.software_genre010603 evolutionary biology01 natural sciencesmacro-ecology333: Bodenwirtschaft und Ressourcen577: ÖkologieRealized niche widthMacroecologyEcological niche[SDV.EE]Life Sciences [q-bio]/Ecology environmentspatial scaleEcologyDatabaseNull modelvegetation plot databasesclimatic nichevascular plantSampling (statistics)species rangeVegetation15. Life on landDynamic Match Coefficient (DMC)sampling biasGeographyrealized niche1181 Ecology evolutionary biologymacroecology[SDE.BE]Environmental Sciences/Biodiversity and Ecologycomputer010606 plant biology & botanyEuropean Vegetation Archive (EVA)
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gllvm: Fast analysis of multivariate abundance data with generalized linear latent variable models inr

2019

The work of J.N. was supported by the Wihuri Foundation. The work of S.T. was supported by the CRoNoS COST Action IC1408.F.K.C.H. was also supported by an ANU cross disciplinary grant.

0106 biological sciencesClustering high-dimensional dataMultivariate statisticsMultivariate analysisCross disciplinary010604 marine biology & hydrobiologyEcological ModelingMaximum likelihoodLatent variable010603 evolutionary biology01 natural sciencesAbundance (ecology)StatisticsCost actionEcology Evolution Behavior and SystematicsMathematicsMethods in Ecology and Evolution
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