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showing 10 items of 22846 documents

Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

2010

Abstract Background Synechocystis sp. PCC6803 is a cyanobacterium considered as a candidate photo-biological production platform - an attractive cell factory capable of using CO2 and light as carbon and energy source, respectively. In order to enable efficient use of metabolic potential of Synechocystis sp. PCC6803, it is of importance to develop tools for uncovering stoichiometric and regulatory principles in the Synechocystis metabolic network. Results We report the most comprehensive metabolic model of Synechocystis sp. PCC6803 available, iSyn669, which includes 882 reactions, associated with 669 genes, and 790 metabolites. The model includes a detailed biomass equation which encompasses…

0106 biological sciencesSystems biologyIn silicoMetabolic networkComputational biologyBiologyModels Biological01 natural sciencesMetabolic engineeringGene Knockout Techniques03 medical and health sciencesStructural BiologyModelling and Simulation010608 biotechnologyBotanyBiomassPhotosynthesislcsh:QH301-705.5Molecular Biology030304 developmental biologyAutotrophic Processes0303 health sciencesGene Expression ProfilingApplied MathematicsSynechocystisSynechocystisGenomicsDarknessbiology.organism_classificationComputer Science ApplicationsFlux balance analysislcsh:Biology (General)Genes BacterialAutotrophic ProcessesModeling and SimulationEnergy sourceGenome BacterialResearch ArticleBMC Systems Biology
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Environmental controls on benthic food web functions and carbon resource use in subarctic lakes

2019

Climate warming and consequent greening of subarctic landscapes increase the availability of organic carbon to the detrital food webs in aquatic ecosystems. This may cause important shifts in ecosystem functioning through the functional feeding patterns of benthic organisms that rely differently on climatically altered carbon resources. Twenty-five subarctic lakes in Finnish Lapland across a tree line ecotone were analysed for limnological and optical variables, carbon (delta C-13) and nitrogen (delta N-15) stable isotope (SI) composition of surface sediment organic matter (OM) and fossil Chironomidae (Diptera) remains to examine environmental controls behind chironomid functional feeding g…

0106 biological sciencesTROPHIC FRACTIONATIONliuennut orgaaninen hiilita1171stable isotopesAquatic Sciencefunctional ecology010603 evolutionary biology01 natural sciencesPaleolimnologyZooplanktonChironomidaeINVERTEBRATESDELTA-C-13STABLE-ISOTOPE RATIOS14. Life underwatersurviaissääsket1172 Environmental sciencesInvertebrateTotal organic carbonFunctional ecologyFRESH-WATERpaleolimnologyEcology010604 marine biology & hydrobiologyorganic carbonhiilen kierto15. Life on landSubarctic climateFood webpaleolimnologiaNITROGEN13. Climate actionBenthic zoneZOOPLANKTON1181 Ecology evolutionary biologyEnvironmental scienceta1181ENRICHMENTDELTA-N-15TERRESTRIAL ORGANIC-MATTERravintoverkot
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Ergosterol elicits oxidative burst in tobacco cells via phospholipase A2 and protein kinase C signal pathway

2004

Ergosterol, a typical fungal sterol, induced in tobacco (Nicotiana tabacum L. cv. Xanthi) suspension cells the synthesis of reactive oxygen species and alkalization of the external medium that are dependent on the mobilization of calcium from internal stores. We used specific inhibitors to elucidate the signal pathway triggered by ergosterol compared with cryptogein, a proteinaceous elicitor of Phytophthora cryptogea. HerbimycinA and genistein, inhibitors of tyrosine protein kinases, had no effect on the oxidative burst and pH changes induced by bothelicitors.Similarly,H-89,aninhibitorofproteinkinaseA,hadnoeffectontheinductionofthesedefensereactions.However,theresponse to both elicitors was…

0106 biological sciencesTime FactorsCell SurvivalPhysiologyPlant Science01 natural sciencesPhospholipases AFungal Proteins03 medical and health scienceschemistry.chemical_compoundPhospholipase A2ErgosterolPROTEINE KINASE CTobacco[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular Biologypolycyclic compoundsGenetics[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyEnzyme InhibitorsEstrenesProtein kinase ACells CulturedProtein Kinase CProtein kinase CComputingMilieux_MISCELLANEOUS030304 developmental biologySulfonamides0303 health sciencesErgosterolbiologyPhospholipase CAlgal ProteinsNeomycinIsoquinolinesPyrrolidinonesSterolElicitorRespiratory burstOxidative StressPhospholipases A2chemistryBiochemistryType C Phospholipasesbiology.proteinlipids (amino acids peptides and proteins)Signal Transduction010606 plant biology & botany
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Cytosolic calcium rises and related events in ergosterol-treated Nicotiana cells

2011

International audience; The typical fungal membrane component ergosterol was previously shown to trigger defence responses and protect plants against pathogens. Most of the elicitors mobilize the second messenger calcium, to trigger plant defences. We checked the involvement of calcium in response to ergosterol using Nicotiana plumbaginifolia and Nicotiana tabacum cv Xanthi cells expressing apoaequorin in the cytosol. First, it was verified if ergosterol was efficient in these cells inducing modifications of proton fluxes and increased expression of defence-related genes. Then, it was shown that ergosterol induced a rapid and transient biphasic increase of free [Ca2þ]cyt which intensity dep…

0106 biological sciencesTime FactorsPhysiologyNicotiana tabacumPlant SciencesterolsSecond Messenger Systemstobacco01 natural scienceschemistry.chemical_compoundCytosolpolycyclic compoundsPhosphorylationCalcium signalingreactive oxygen species0303 health sciencesErgosterolelicitorbiologyergosterolHydrogen-Ion ConcentrationPlants Genetically ModifiedRecombinant ProteinsCell biologyBiochemistrySecond messenger systemReactive oxygen species; Calcium signature; Elicitor; Signal transduction; MAPKs; tobaccolipids (amino acids peptides and proteins)Protonssignal transductionCell Survivalnicotiana plumbaginifoliachemistry.chemical_elementnicotiana tabacumoxydantCalciumcalcium signature03 medical and health sciencesAequorinMAPKsBAPTAGenetics[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyCalcium Signaling030304 developmental biologyMitogen-Activated Protein Kinase KinasesCalcium metabolismHydrogen Peroxidebiochemical phenomena metabolism and nutritionbiology.organism_classificationCytosolchemistryCalciumApoproteins010606 plant biology & botany
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Combining spatial prioritization and expert knowledge facilitates effectiveness of large-scale mire protection process in Finland

2019

Conservation resource allocation involves a complex set of considerations including species, habitats, connectivity, local to global biodiversity objectives, alternative protection and restoration actions, while requiring cost-efficiency and effective implementation. We present a national scale spatial conservation prioritization analysis for complementing the network of protected mires in Finland. We show how spatial prioritization coupled with regional targets and expert knowledge can facilitate structured decision-making. In our application, discussion between experts was structured around the prioritization model enabling integration of quantitative analysis with expert knowledge. The u…

0106 biological sciencesTrade-offsProcess (engineering)Computer science010604 marine biology & hydrobiologyScale (chemistry)MiresRestoration prioritization15. Life on land010603 evolutionary biology01 natural sciencesUnit (housing)Quantitative analysis (finance)13. Climate actionImplementationKey (cryptography)Expert knowledgeResource allocationSpatial prioritizationKnowledge transferEnvironmental planningEcology Evolution Behavior and Systematics1172 Environmental sciencesNature and Landscape ConservationGlobal biodiversity
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The Importance of Engaging Local People in Landscape Management – Experiences from an EU Project

2018

“Bull by the Horns” -project initiated landscape management and promoted biodiversity associated with diminishing High Nature Value farmland habitats in Finland. A specific focus was on grazed semi-natural grasslands and wood-pastures which are collectively referred to as traditional rural biotopes (TRBs). Collaboration among project workers, non-farming landowners, and cattle owners reintroduced grazing to abandoned pastures, and management was financed through agri-environmental payments. Using adaptive co-management principles, the project enabled collective definition of integrated site-specific management objectives. A better understanding of contemporary challenges and opportunities t…

0106 biological sciencesValue (ethics)maisemanhoitohyvät käytännötmedia_common.quotation_subjectta1172High Nature Value farmland0211 other engineering and technologiesadaptive governanceagri-environment scheme02 engineering and technologylandscape management010603 evolutionary biology01 natural sciencesympäristöohjelmatlcsh:HD101-1395.5yhteistoimintahankesuunnittelusitouttaminenEnvironmental planningta119Nature and Landscape Conservationmedia_commonEcologyadaptive co-managementCorporate governanceprojectification021107 urban & regional planningPaymentprojektitlcsh:Land usehallintoCollaborative managementBusinessManagement by objectivescollaborative planningpaikalliset toimijatLandscape Online
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Global endemics-area relationships of vascular plants

2019

Endemics–Area Relationships (EARs)are fundamental in theoretical and applied biogeography for understanding distribution patterns and promoting biodiversity conservation. However, calculating EARs for vascular plant species from existing data is problematic because of biased knowledge of endemic species distributions and differences between taxonomies. We aimed to overcome these challenges by developing a new standardized global dataset based on expert knowledge to produce a set of global EARs. We developed a nested circle design, with grain sizes of 10 4 , 10 5 , 10 6 , 10 7 , and 10 8 km 2 , respectively, and a global distribution of plots based on a stratified random scheme. The number …

0106 biological sciencesVascular plantZero-endemic plotslcsh:QH1-199.5Range (biology)Biogeographylcsh:General. Including nature conservation geographical distributionManagement Monitoring Policy and Law010603 evolutionary biology01 natural sciencesMinimum and maximum estimatelcsh:QH540-549.5StatisticsEndemismZero-endemic plotNature and Landscape ConservationEstimationbiologyEcology010604 marine biology & hydrobiologySampling (statistics)Minimum and maximum estimatesbiology.organism_classificationGeographyGlobal referenceExpert knowledgelcsh:EcologySpecies richnessScale (map)Distribution of land and sea
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Characterization of kefir-like beverages produced from vegetable juices

2016

The aim of this work was to develop new non-dairy fermented beverages using vegetable juices as fermentable substrates. Carrot, fennel, melon, onion, tomato and strawberry juices underwent back-slopping fermentations, carried out by water kefir microorganisms. Results indicated that lactic acid bacteria and yeasts were capable of growing in the juices tested. Melon juice registered the highest numbers of microorganisms. Almost all juices underwent a lactic fermentation. After fermentation, there was observance of a decrease of the soluble solid content and an increase of the number of volatile organic compounds. In particular, esters were present in high amounts after the fermentation, espe…

0106 biological sciencesVegetable juicesMelonFunctional foodsMicroorganismMicroorganismsSettore AGR/04 - Orticoltura E Floricoltura01 natural sciencesTerpeneFermentation Functional foods Kefir-like beverages Microorganisms Vegetable juiceschemistry.chemical_compound0404 agricultural biotechnology010608 biotechnologyFood sciencebiologyKefirfood and beveragesSettore AGR/15 - Scienze E Tecnologie Alimentari04 agricultural and veterinary sciencesbiology.organism_classification040401 food scienceLactic acidKefir-like beverageschemistryFermentationFermentationLactic acid fermentationBacteriaSettore AGR/16 - Microbiologia AgrariaFood ScienceLWT - Food Science and Technology
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Première contribution à l'étude des mycorhizes des îles Kerguelen

1999

Abstract Until recently mycorrhizae had not been studied in the Antarctic region. Some studies have demonstrated that mycorrhizae occur in some southern circumpolar islands. This paper gives the first results on the mycorrhizae in the Kerguelen islands (Sub-antarctic). Twenty-one plant root systems, fixed in the field, were examined microscopically in the laboratory to determine their mycorrhizal status. No ectomycorrhiza, arbutoid or ericoid were noted. Six plant species showed vesicular arbuscular mycorrhizae: Ranunculus biternatus, Galium antarcticum, Festuca erecta, Poa kerguelensis, Agrostis magellanica and Poa annua. However, the mycorrhizal status varied according to the site studied.

0106 biological sciences[SDE] Environmental Sciences0303 health sciencesEcologyFestucabiology[SDV]Life Sciences [q-bio]15. Life on landbiology.organism_classification010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology030308 mycology & parasitologyGaliumEctomycorrhiza[SDV] Life Sciences [q-bio]03 medical and health sciencesSymbiosisPoa kerguelensisBotany[SDE]Environmental SciencesPlant speciesPoa annuaMycorrhizaComputingMilieux_MISCELLANEOUS
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Use of chlorophyll fluorescence induction kinetics to study translocation and detoxication of DCMU-type herbicides in plant leaves

1984

Transient levels of the fluorescence induction rise were used to quantify partial photosynthesis inhibition by DCMU -type herbicides in whole leaves. Assays in different crop or weed species showed a good accuracy in measurements (generally, variation was lower than 5%). This technique was applied to the problem of varietal selectivity of wheat towards chlortoluron.

0106 biological sciences[SDV]Life Sciences [q-bio]food and beveragesDCMUChromosomal translocation04 agricultural and veterinary sciencesMETHODE PAR CHIMILUMINESCENCEInduction kineticsPhotosynthesis01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyDetoxication[SDV] Life Sciences [q-bio]010602 entomologychemistry.chemical_compoundchemistryBotanyChlortoluron040103 agronomy & agriculture0401 agriculture forestry and fisheriesWeedChlorophyll fluorescenceComputingMilieux_MISCELLANEOUS
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