Search results for " shell"

showing 10 items of 307 documents

Eggshell types and their evolutionary correlation with life-history strategies in squamates

2015

The eggshell is an important physiological structure for the embryo. It enables gas exchange, physical protection and is a calcium reserve. Most squamates (lizards, snakes, worm lizards) lay parchment-shelled eggs, whereas only some gekkotan species, a subgroup of lizards, have strongly calcified eggshells. In viviparous (live-bearing) squamates the eggshell is reduced or completely missing (hereafter “shell-less”). Recent studies showed that life-history strategies of gekkotan species differ between species with parchment- and rigid-shelled eggshells. Here we test if the three different eggshell types found in the squamates are also associated with different life-history strategies. We fir…

Principal Component Analysislcsh:RReptileslcsh:MedicineBiological Evolution590 Tiere (Zoologie)Egg Shell590 Zoological sciencesSpecies SpecificityAnimalsFemalelcsh:Qlcsh:SciencePhylogenyResearch Article
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Evolution of nacre: biochemistry and proteomics of the shell organic matrix of the cephalopod Nautilus macromphalus.

2009

12 pages; International audience; In mollusks, one of the most widely studied shell textures is nacre, the lustrous aragonitic layer that constitutes the internal components of the shells of several bivalves, a few gastropods, and one cephalopod: the nautilus. Nacre contains a minor organic fraction, which displays a wide range of functions in relation to the biomineralization process. Here, we have biochemically characterized the nacre matrix of the cephalopod Nautilus macromphalus. The acid-soluble matrix contains a mixture of polydisperse and discrete proteins and glycoproteins, which interact with the formation of calcite crystals. In addition, a few bind calcium ions. Furthermore, we h…

ProteomeShell (structure)ProteomicsBiochemistryCalcium Carbonate03 medical and health sciencesPaleontologychemistry.chemical_compoundproteomicsevolutionAnimals14. Life underwaterAmino Acid SequenceNautilus[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular BiologyChromatography High Pressure Liquid030304 developmental biologyCalciteNautilus macromphalus0303 health sciencesbiology030302 biochemistry & molecular biologyOrganic ChemistryProteinsbiology.organism_classificationbiomineralization[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsBiological EvolutionCephalopodCalcium carbonatechemistryChemical engineeringSolubilitySpectrometry Mass Matrix-Assisted Laser Desorption-IonizationMolecular MedicineNautilusNautilus macromphalusSequence AlignmentBiomineralizationmollusk shell nacre
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Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas

2018

15 pages; International audience; Background: Conchiferan molluscs construct a biocalcified shell that likely supported much of their evolutionary success.However, beyond broad proteomic and transcriptomic surveys of molluscan shells and the shell-forming mantle tissue,little is known of the spatial and ontogenetic regulation of shell fabrication. In addition, most efforts have been focused onspecies that deposit nacre, which is at odds with the majority of conchiferan species that fabricate shells using acrossed-lamellar microstructure, sensu lato. Results: By combining proteomic and transcriptomic sequencing with in situhybridization we have identified a suite of gene products associated …

Proteomics0301 basic medicineGlycosylationProteomematrix proteinHealth InformaticsLymnaea stagnalisProteomicsalternative splicing03 medical and health sciencesmolluscAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]evolutionAnimalsMantle (mollusc)GeneGenetic Association Studiesmodularitymollusc; biomineralizationRegulation of gene expressionMineralsbiologyPhylumResearchGene Expression ProfilingGene Expression Regulation Developmentalbiomineralizationbiology.organism_classificationComputer Science ApplicationsGene expression profilingEvolvability030104 developmental biologyMolluscashellEvolutionary biologygene expressiontranscriptomeasymmetryGigaScience
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Proteomics of CaCO3 biomineral-associated proteins: how to properly address their analysis.

2013

8 pages; International audience; In a recent editorial (Proc. Natl. Acad. Sci., 2013 110, E2144-E2146) and elsewhere, questions have been raised regarding the experimental practices in relation to the proteomic analysis of organic matrices associated to the biomineralized CaCO3 skeletons of metazoans such as molluscan shells and coral skeletons. Indeed, although the use of new high sensitivity MS technology potentially allows to identify a greater number of proteins, it is also equally (or even more) sensitive to contamination of residual proteins from soft tissues, which are in close contact with the biomineral. Based on our own past and present experimental know-how-observations that are …

ProteomicsBiomineralizationSample preparationNanotechnologyComputational biologyBiologyProteomicsBiochemistryCalcium Carbonate03 medical and health sciencesCalcification PhysiologicBleaching treatmentAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]AnimalsCalcifying extracellular matrix[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular BiologyClose contact030304 developmental biology0303 health sciences030302 biochemistry & molecular biologyProteinsAnimal proteomics[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsAnthozoaExtracellular Matrix[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]MolluscaProtein identificationProtein identificationBiomineralization
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Nacre calcification in the freshwater mussel Unio pictorum: carbonic anhydrase activity and purification of a 95 kDa calcium-binding glycoprotein.

2008

9 pages; International audience; The formation of the molluscan shell is finely tuned by macromolecules of the shell organic matrix. Previous results have shown that the acid-soluble fraction of the nacre matrix of the freshwater paleoheterodont bivalve Unio pictorum shell displays a number of remarkable properties, such as calcium-binding activity, the presence of extensive glycosylations and the capacity to interfere at low concentration with in vitro calcium carbonate precipitation. Here we have found that the nacre-soluble matrix exhibits a carbonic anhydrase activity, an important function in calcification processes. This matrix is composed of three main proteinaceous discrete fraction…

ProteomicsCarbonateschemistry.chemical_elementFresh WaterCalciumBiochemistryMass Spectrometry03 medical and health scienceschemistry.chemical_compoundCalcification PhysiologicCalcium-binding proteinCarbonic anhydraseMollusc shellmedicineAnimalsGlycosyl[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyAmino Acid Sequence[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular Biology[ SDV.BBM ] Life Sciences [q-bio]/Biochemistry Molecular BiologyCarbonic AnhydrasesGlycoproteins030304 developmental biologychemistry.chemical_classificationbiomineralization; mollusc shell nacre; carbonic anhydrase; 2-DE; two-dimensional electrophoresis; organic matrix0303 health sciencesbiologyCalcium-Binding Proteins030302 biochemistry & molecular biologyOrganic ChemistryUnio pictorumbiology.organism_classificationTrypsin[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsBivalviaEnzyme ActivationMolecular WeightSolubilitychemistryBiochemistryMicroscopy Electron Scanningbiology.proteinMolecular MedicineCalciumGlycoproteinGelsSequence Analysismedicine.drug
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Metal stresses modify soluble proteomes and toxin profiles in two Mediterranean strains of the distributed dinoflagellate Alexandrium pacificum

2022

WOS:000789651000009; HABs involving Alexandrium pacificum have been reported in metal-contaminated ecosystems, suggesting that this distributed species adapts to and/or can tolerate the effects of metals. Modifications in soluble proteomes and PST contents were characterized in two Mediterranean A. pacificum strains exposed to mono- or polymetallic stresses (zinc, lead, copper, cadmium). These strains were isolated from two anthropized locations: Santa Giusta Lagoon (Italy, SG C10-3) and the Tarragona seaport (Spain, TAR C5-4F). In both strains, metals primarily downregulated key photosynthesis proteins. Metals also upregulated other proteins involved in photosynthesis (PCP in both strains)…

ProteomicsEnvironmental EngineeringProteomeParalytic shellfish toxins[SDE.MCG]Environmental Sciences/Global Changeschemistry.chemical_elementmedicine.disease_causePhotosynthesiscomplex mixturesMicrobiologychemistry.chemical_compoundTar (tobacco residue)BiosynthesismedicineEnvironmental ChemistryWaste Management and DisposalEcosystemCadmiumbiologyStrain (chemistry)Harmful algal bloomToxinChemistryDinoflagellatebiology.organism_classificationPollutionADKMetalsDinoflagellida[SDE.BE]Environmental Sciences/Biodiversity and Ecology
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Proton, Hydroxide Ion, and Oxide Ion Affinities of Closed-Shell Oxides: Importance for the Hydration Reaction and Correlation to Electronic Structure

2019

Phenomenologically, the enthalpy of the dissociative water incorporation (hydration) of oxides is often found to be more favorable for more basic oxides. In the present work, we investigate proton,...

ProtonChemistryInorganic chemistryEnthalpy02 engineering and technologyElectronic structure010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesAffinities0104 chemical sciencesSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsIonchemistry.chemical_compoundGeneral EnergyHydration reactionHydroxidePhysical and Theoretical Chemistry0210 nano-technologyOpen shellThe Journal of Physical Chemistry C
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A closed-form solution for natural frequencies of thin-walled cylinders with clamped edges

2016

Abstract This paper presents an approximate closed-form solution for the free-vibration problem of thin-walled clamped–clamped cylinders. The used indefinite equations of motion are classic. They derive from Reissner׳s version of Love׳s theory, properly modified with Donnell׳s assumptions, but an innovative approach has been used to find the equations of natural frequencies, based on a solving technique similar to Rayleigh׳s method, on the Hamilton׳s principle and on a proper constructions of the eigenfuctions. Thanks to the used approach, given the geometric and mechanical characteristics of the cylinder, the model provides the natural frequencies via a sequence of explicit algebraic equat…

SequenceMechanical EngineeringEquations of motionNatural frequency02 engineering and technology021001 nanoscience & nanotechnologyCondensed Matter PhysicsSettore ING-IND/13 - Meccanica Applicata Alle MacchineCircular cylindrical shell Natural frequencies Free vibrations Hamilton's principleFinite element methodsymbols.namesakeAlgebraic equation020303 mechanical engineering & transports0203 mechanical engineeringMechanics of MaterialsNormal modeCalculussymbolsApplied mathematicsGeneral Materials ScienceHamilton's principleClosed-form expression0210 nano-technologyCivil and Structural EngineeringMathematicsInternational Journal of Mechanical Sciences
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Baseline assessment of heavy metals content and trophic position of the invasive blue swimming crab Portunus segnis (Forskål, 1775) in the Gulf of Ga…

2018

This study provides a baseline assessment of cadmium, copper, iron, manganese, lead, and zinc concentrations in muscles, gills, and exoskeleton of the Lessepsian blue swimming crab Portunus segnis captured in the Gulf of Gabès (Southern Mediterranean Sea, Tunisia) in November 2015. Furthermore, the species’ trophic position is estimated using CN stable isotope analysis. The exoskeleton showed the lowest metal contents; in soft tissues, the essential Cu, Fe, and Zn and the non-essential Cd, Mn, and Pb showed the highest and lowest concentrations, respectively. The crab was characterized by a trophic position of 3.32, confirming its carnivorous trophic habits. Compared with literature data on…

Settore BIO/07 - EcologiaGills0106 biological sciencesGillMediterranean climateFood ChainTunisiaBrachyurachemistry.chemical_elementZoologyPortunus segni010501 environmental sciencesAquatic ScienceBiologyOceanography01 natural sciencesAnimal ShellMediterranean seaAnimal ShellsBaselineMetals HeavyMediterranean SeaAnimalsTissue Distribution0105 earth and related environmental sciencesInvertebrateIsotope analysisTrophic levelCadmiumAnimalStable isotope ratioMuscles010604 marine biology & hydrobiologyFishesTrophic positionStable isotopePollutionHeavy metalchemistryGillMuscleBiological invasionFisheWater Pollutants ChemicalEnvironmental MonitoringMarine Pollution Bulletin
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Morphometric analysis of the shells of the Genus Bolivina from the Gulf of Gela (Sicilian Channel, Italy): a valid classification instrument?

2010

Settore BIO/07 - Ecologiaforaminifera shell malformations contamination Metditerranean
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