Search results for " topology"

KnotGenome: a server to analyze entanglements of chromosomes.

2018

Abstract The KnotGenome server enables the topological analysis of chromosome model data using three-dimensional coordinate files of chromosomes as input. In particular, it detects prime and composite knots in single chromosomes, and links between chromosomes. The knotting complexity of the chromosome is presented in the form of a matrix diagram that reveals the knot type of the entire polynucleotide chain and of each of its subchains. Links are determined by means of the Gaussian linking integral and the HOMFLY-PT polynomial. Entangled chromosomes are presented graphically in an intuitive way. It is also possible to relax structure with short molecular dynamics runs before the analysis. Kn…

Retrieving infinite numbers of patterns in a spin-glass model of immune networks

2013

The similarity between neural and immune networks has been known for decades, but so far we did not understand the mechanism that allows the immune system, unlike associative neural networks, to recall and execute a large number of memorized defense strategies {\em in parallel}. The explanation turns out to lie in the network topology. Neurons interact typically with a large number of other neurons, whereas interactions among lymphocytes in immune networks are very specific, and described by graphs with finite connectivity. In this paper we use replica techniques to solve a statistical mechanical immune network model with `coordinator branches' (T-cells) and `effector branches' (B-cells), a…

2020

Hierarchy and centrality are two popular notions used to characterize the importance of entities in complex systems. Indeed, many complex systems exhibit a natural hierarchical structure, and centrality is a fundamental characteristic allowing to identify key constituents. Several measures based on various aspects of network topology have been proposed in order to quantify these concepts. While numerous studies have investigated whether centrality measures convey redundant information, how centrality and hierarchy measures are related is still an open issue. In this paper, we investigate the association between centrality and hierarchy using several correlation and similarity evaluation mea…

OPERADS AND JET MODULES

2005

Let $A$ be an algebra over an operad in a cocomplete closed symmetric monoidal category. We study the category of $A$-modules. We define certain symmetric product functors of such modules generalising the tensor product of modules over commutative algebras, which we use to define the notion of a jet module. This in turn generalises the notion of a jet module over a module over a classical commutative algebra. We are able to define Atiyah classes (i.e. obstructions to the existence of connections) in this generalised context. We use certain model structures on the category of $A$-modules to study the properties of these Atiyah classes. The purpose of the paper is not to present any really de…

Projective models of K3 surfaces with an even set

2006

The aim of this paper is to describe algebraic K3 surfaces with an even set of rational curves or of nodes. Their minimal possible Picard number is nine. We completely classify these K3 surfaces and after a carefull analysis of the divisors contained in the Picard lattice we study their projective models, giving necessary and sufficient conditions to have an even set. Moreover we investigate their relation with K3 surfaces with a Nikulin involution.

Moduli spaces of rank two aCM bundles on the Segre product of three projective lines

2016

Let P^n be the projective space of dimension n on an algebraically closed field of characteristic 0 and F be the image of the Segre embedding of P^1xP^1xP^1 inside P^7. In the present paper we deal with the moduli spaces of locally free sheaves E on F of rank 2 with h^i(F,E(t))=0 for i=1,2 and each integer t.

The proof of Birman’s conjecture on singular braid monoids

2003

Let B_n be the Artin braid group on n strings with standard generators sigma_1, ..., sigma_{n-1}, and let SB_n be the singular braid monoid with generators sigma_1^{+-1}, ..., sigma_{n-1}^{+-1}, tau_1, ..., tau_{n-1}. The desingularization map is the multiplicative homomorphism eta: SB_n --> Z[B_n] defined by eta(sigma_i^{+-1}) =_i^{+-1} and eta(tau_i) = sigma_i - sigma_i^{-1}, for 1 <= i <= n-1. The purpose of the present paper is to prove Birman's conjecture, namely, that the desingularization map eta is injective.

Automorphisms of 2–dimensional right-angled Artin groups

2007

We study the outer automorphism group of a right-angled Artin group AA in the case where the defining graph A is connected and triangle-free. We give an algebraic description of Out.AA/ in terms of maximal join subgraphs in A and prove that the Tits’ alternative holds for Out.AA/. We construct an analogue of outer space for Out.AA/ and prove that it is finite dimensional, contractible, and has a proper action of Out.AA/. We show that Out.AA/ has finite virtual cohomological dimension, give upper and lower bounds on this dimension and construct a spine for outer space realizing the most general upper bound. 20F36; 20F65, 20F28

Space-filling vs. Luzin's condition (N)

2013

Let us assume that we are given two metric spaces, where the Hausdorff dimension of the first space is strictly smaller than the one of the second space. Suppose further that the first space has sigma-finite measure with respect to the Hausdorff measure of the corresponding dimension. We show for quite general metric spaces that for any measurable surjection from the first onto the second space, there is a set of measure zero that is mapped to a set of positive measure (both measures are the Hausdorff measures corresponding to the Hausdorff dimension of the first space). We also study more general situations where the measures on the two metric spaces are not necessarily the same and not ne…

Dehn surgeries and smooth structures on 3-dimensional transitive Anosov flows.

2020

The present thesis is about Dehn surgeries and smooth structures associated with transitive Anosov flows in dimension three. Anosov flows constitute a very important class of dynamical systems, because of its persistent chaotic behaviour, as well as for its rich interaction with the topology of the ambient space. Even if a lot is known about the dynamical and ergodic properties of these systems, there is not a clear understanding about how to classify its different orbital equivalence classes. Until now, the biggest progress has been done in dimension three, where there is a family of techniques intended for the construction of Anosov flows called surgeries.During the realization of this th…