Search results for "118"

showing 10 items of 1448 documents

Comment on “A simple way to incorporate uncertainty and risk into forest harvest scheduling”

2017

In a recent research article, Robinson et al. (2016) described a method of estimating uncertainty of harvesting outcomes by analyzing the historical yield to the associated prediction for a large number of harvest operations. We agree with this analysis, and consider it a useful tool to integrate estimates of uncertainty into the optimization process. The authors attempt to manage the risk using two different methods, based on deterministic integer linear programming. The first method focused on maximizing the 10th quantile of the distribution of predicted volume subject to area constraint, while the second method focused on minimizing the variation of total quantity of volume harvested sub…

0106 biological sciences021103 operations researchOperations researchComputer science0211 other engineering and technologiesDownside riskScheduling (production processes)Forestry02 engineering and technologyManagement Monitoring Policy and Lawepävarmuus01 natural sciencesStochastic programmingExpected shortfallstochastic programmingConditional Value at Riskta1181Research articleuncertaintyInteger programming010606 plant biology & botanyNature and Landscape ConservationQuantileriskForest Ecology and Management
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Stabilizing selection on microsatellite allele length at arginine vasopressin 1a receptor and oxytocin receptor loci

2017

The loci arginine vasopressin receptor 1a ( avpr1a ) and oxytocin receptor ( oxtr ) have evolutionarily conserved roles in vertebrate social and sexual behaviour. Allelic variation at a microsatellite locus in the 5′ regulatory region of these genes is associated with fitness in the bank vole Myodes glareolus . Given the low frequency of long and short alleles at these microsatellite loci in wild bank voles, we used breeding trials to determine whether selection acts against long and short alleles. Female bank voles with intermediate length avpr1a alleles had the highest probability of breeding, while male voles whose avpr1a alleles were very different in length had reduced probability of …

0106 biological sciences0301 basic medicine1001MaleReceptors Vasopressin197VNTRLocus (genetics)gene dynamicsBiology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesGene FrequencyGenotypeGenetic variationAnimalsBehaviourAlleleStabilizing selectionSelection GeneticAllele frequencyAllelesGeneral Environmental ScienceGeneticsnoncoding genomeGeneral Immunology and MicrobiologylisääntymiskäyttäytyminenArvicolinae70Genetic Variation14General MedicineOxytocin receptor030104 developmental biologyReceptors OxytocinMicrosatelliteta1181Femalereproductive behaviourGeneral Agricultural and Biological SciencesResearch ArticleMicrosatellite Repeats
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Phylogeography, evolutionary history and effects of glaciations in a species (Zootoca vivipara) inhabiting multiple biogeographic regions

2018

[Aim]: During glaciations, the distribution of temperate species inhabiting the Northern Hemisphere generally contracts into southern refugia; and in boreo‐alpine species of the Northern Hemisphere, expansion from Northern refugia is the general rule. Little is known about the drivers explaining vast distributions of species inhabiting multiple biogeographic regions (major biogeographic regions defined by the European Environmental Agency). Here we investigate the fine‐scale phylogeography and evolutionary history of the Eurasian common lizard (Zootoca vivipara), the terrestrial reptile with the world's widest and highest latitudinal distribution, that inhabits multiple biogeographic region…

0106 biological sciences0301 basic medicineAncestral area reconstructionBiogeographyPermafrostglacial refuges010603 evolutionary biology01 natural scienceslast glacial maximaeliömaantiede03 medical and health sciencesfylogeografiajääkaudetPhylogeneticsMolecular diversityddc:570Glacial periodGlacial refugesLast glacial maximaComputingMilieux_MISCELLANEOUSEcology Evolution Behavior and SystematicsPhylogenybiogeographyInstitut für Biochemie und BiologieEcologyPhylogenetic treeEcologyPost‐glacial recolonizationLast Glacial Maximumlevinneisyys15. Life on landsisiliskoancestral area reconstructionPhylogeography030104 developmental biologyGeographyBiogeography13. Climate actionancestral biogeographic region reconstructionInterglacialta1181[SDE.BE]Environmental Sciences/Biodiversity and EcologyAncestral biogeographic region reconstruction
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Survival and gene expression under different temperature and humidity regimes in ants

2017

Short term variation in environmental conditions requires individuals to adapt via changes in behavior and/or physiology. In particular variation in temperature and humidity are common, and the physiological adaptation to changes in temperature and humidity often involves alterations in gene expression, in particular that of heat-shock proteins. However, not only traits involved in the resistance to environmental stresses, but also other traits, such as immune defenses, may be influenced indirectly by changes in temperature and humidity. Here we investigated the response of the ant F. exsecta to two temperature regimes (20 degrees C & 25 degrees C), and two humidity regimes (50% & 75%), for…

0106 biological sciences0301 basic medicineAtmospheric ScienceympäristöAcclimatizationGene Expressionlcsh:MedicinemuutosALFALFA LEAFCUTTING BEEBiochemistryImmune Receptors01 natural sciencesEndocrinologyACCLIMATIONmuurahaisetGene expressionMedicine and Health SciencesIMMUNE-RESPONSEInsulinTRANSCRIPTIONgeeniekspressiolcsh:SciencePOPULATIONHeat-Shock ProteinsProtein MetabolismsopeutuminenPrincipal Component Analysiseducation.field_of_studyImmune System ProteinsMultidisciplinaryBehavior AnimalEcologyolosuhteetTemperaturefood and beveragesANThumanitiesInsectsimmuunijärjestelmä1181 Ecology evolutionary biologyPhysical SciencesMEGACHILE-ROTUNDATAlämpötilaympäristönmuutoksetResearch ArticleNutrient and Storage ProteinsSignal TransductionArthropodaImmunologyPopulationZoologyBiology010603 evolutionary biologyAcclimatization03 medical and health sciencesMeteorologyTwo temperatureStress PhysiologicalGeneticsAnimalseducationGeneProportional Hazards ModelsDiabetic EndocrinologyAntsBEAUVERIA-BASSIANAGene Expression Profilinglcsh:ROrganismshumidityBiology and Life SciencesProteinsHumiditytemperatureHumidityEigenvaluesCell BiologyDESICCATIONInvertebratesHymenopteraHormonesMetabolismAlgebra030104 developmental biologyGene Expression RegulationLinear AlgebraDROSOPHILA-MELANOGASTERkosteusEarth Sciencesgene expressionta1181lcsh:QFormica exsectaDesiccationRESISTANCEMathematics
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Give me a sample of air and I will tell which species are found from your region : Molecular identification of fungi from airborne spore samples

2017

Fungi are a megadiverse group of organisms, they play major roles in ecosystem functioning and are important for human health, food production and nature conservation. Our knowledge on fungal diversity and fungal ecology is however still very limited, in part because surveying and identifying fungi is time demanding and requires expert knowledge. We present a method that allows anyone to generate a list of fungal species likely to occur in a region of interest, with minimal effort and without requiring taxonomical expertise. The method consists of using a cyclone sampler to acquire fungal spores directly from the air to an Eppendorf tube, and applying DNA barcoding with probabilistic specie…

0106 biological sciences0301 basic medicineBACTERIALBiodiversityAir MicrobiologyDIVERSITYmolecular identificationLANDSCAPE SCALE01 natural sciencesDNA barcodingCOMMUNITY COMPOSITIONekosysteemitTEMPORAL VARIABILITYmolecular biologymolekyylibiologiaFinlandtunnistaminen2. Zero hungeralue-ekologiaOUTDOOR AIREcologySampling (statistics)ReplicateBiodiversitySpores Fungalekosysteemipalvelut1181 Ecology evolutionary biologySeasonsrecognitionsienetecosystemsBiotechnologyregional ecologySample (material)SHORT DISTANCESBiologyspore010603 evolutionary biology03 medical and health sciencesSpecies SpecificityGeneticsDNA Barcoding Taxonomicfungal sampling methodEcosystemEcology Evolution Behavior and SystematicsMolecular identificationWOOD-INHABITING FUNGIFungi15. Life on landatmospheric diversityATMOSPHERESporeekosysteemit (ekologia)fungal diversity030104 developmental biologyfungal survey1182 Biochemistry cell and molecular biologyfungiDISPERSAL LIMITATIONecosystem services
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Host dispersal shapes the population structure of a tick-borne bacterial pathogen

2020

Birds are hosts for several zoonotic pathogens. Because of their high mobility, especially of longdistance migrants, birds can disperse these pathogens, affecting their distribution and phylogeography. We focused on Borrelia burgdorferi sensu lato, which includes the causative agents of Lyme borreliosis, as an example for tick-borne pathogens, to address the role of birds as propagation hosts of zoonotic agents at a large geographical scale. We collected ticks from passerine birds in 11 European countries. B. burgdorferi s.l. prevalence in Ixodes spp. was 37% and increased with latitude. The fieldfare Turdus pilaris and the blackbird T. merula carried ticks with the highest Borrelia prevale…

0106 biological sciences0301 basic medicineBORRELIA-BURGDORFERIACARImedicine.disease_causemigrationBURGDORFERI SENSU-LATO01 natural sciencesSongbirdsLyme diseaseTicksAcariMigration11832 Microbiology and virologyLyme DiseasebiologyPlan_S-Compliant_NOBLACKBIRDS TURDUS-MERULAPREVALENCEEuropehost-parasite interactionsMIGRATORY BIRDSinternational1181 Ecology evolutionary biology[SDE]Environmental SciencesHost-paraste InterationsHost-parasite interactionsAvesTRANSMISSIONZoology010603 evolutionary biologyticksBirds03 medical and health sciencesBorreliaparasitic diseasesGeneticsmedicineAnimalsHumansBorrelia burgdorferiEcology Evolution Behavior and SystematicsLyme borreliosisInfecções Sistémicas e ZoonosesIxodesBird DiseasesBorreliaLYME-DISEASEIXODES-RICINUS TICKSBorrelia gariniiEcologíabiology.organism_classificationmedicine.diseasebacterial infections and mycoses030104 developmental biologybirdsCandidatusWILD BIRDSMultilocus sequence typingBorrelia gariniiIxodesMultilocus Sequence Typing
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Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei)

2018

Abstract Pigmentation has emerged as a premier model for understanding the genetic basis of phenotypic evolution, and a growing catalog of color loci is starting to reveal biases in the mutations, genes, and genetic architectures underlying color variation in the wild. However, existing studies have sampled a limited subset of taxa, color traits, and developmental stages. To expand the existing sample of color loci, we performed QTL mapping analyses on two types of larval pigmentation traits that vary among populations of the redheaded pine sawfly (Neodiprion lecontei): carotenoid-based yellow body color and melanin-based spotting pattern. For both traits, our QTL models explained a substan…

0106 biological sciences0301 basic medicineCandidate geneGenetic LinkageGenome InsectQuantitative Trait LociQuantitative trait locusBiologyInvestigationsevolutionary genetics010603 evolutionary biology01 natural sciencestoukat03 medical and health sciencesQuantitative Trait HeritableGenetic linkageGeneticsGene familyAnimalssahapistiäisetconvergent evolutionDomesticationGeneGenetic Association Studies030304 developmental biologyGenetics0303 health sciencesHuman evolutionary geneticsPigmentationta1184väri (ominaisuudet)carotenoidsChromosome Mappingbiology.organism_classificationgeneettinen muuntelugenetic architectureHymenopteraGenetic architecturekarotenoiditmelaninSawflyNeodiprion lecontei030104 developmental biologyPhenotypeEvolutionary biologyLarvata1181Femalepigmentti (biologia)
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Ultraviolet radiation accelerates photodegradation under controlled conditions but slows the decomposition of senescent leaves from forest stands in …

2019

Depending on the environment, sunlight can positively or negatively affect litter decomposition, through the ensemble of direct and indirect processes constituting photodegradation. Which of these processes predominate depends on the ecosystem studied and on the spectral composition of sunlight received. To examine the relevance of photodegradation for litter decomposition in forest understoreys, we filtered ultraviolet radiation (UV) and blue light from leaves of Fagus sylvatica and Bettda pendula at two different stages of senescence in both a controlled-environment experiment and outdoors in four different forest stands (Picea abies, Pagus sylvatica, Acer platanoides, Betula pendula). Co…

0106 biological sciences0301 basic medicineCanopyUltraviolet RaysPhysiologyUV-B RADIATIONPlant ScienceForestsANTHOCYANINS01 natural sciencesUV radiationBOREAL FOREST03 medical and health scienceschemistry.chemical_compoundFagus sylvaticaPhotodegradationGeneticsPhotodegradationEcosystemFinlandComputingMilieux_MISCELLANEOUS11832 Microbiology and virologyFlavonoidsSunlight[SDV.EE]Life Sciences [q-bio]/Ecology environment4112 ForestryPhotolysisbiologyChemistryTEMPERATEPLANT LITTERPicea abies15. Life on landPlant litterbiology.organism_classificationPhenolic compoundsUnderstorey light environmentSODANKYLAPlant LeavesHorticultureLIGHT030104 developmental biology13. Climate actionBetula pendulaChlorophyllPATTERNS1182 Biochemistry cell and molecular biologyLEAF-LITTER DECOMPOSITION010606 plant biology & botany
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How to fight multiple enemies : target-specific chemical defences in an aposematic moth

2017

Animals have evolved different defensive strategies to survive predation, among which chemical defences are particularly widespread and diverse. Here we investigate the function of chemical defence diversity, hypothesizing that such diversity has evolved as a response to multiple enemies. The aposematic wood tiger moth (Arctia plantaginis) displays conspicuous hindwing coloration and secretes distinct defensive fluids from its thoracic glands and abdomen. We presented the two defensive fluids from laboratory-reared moths to two biologically relevant predators, birds and ants, and measured their reaction in controlled bioassays (no information on colour was provided). We found that defensive…

0106 biological sciences0301 basic medicineColorAposematismBiologyMoths010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyPredationBirds03 medical and health sciencesSpecies SpecificityAnimalsaposematismta116General Environmental ScienceGeneral Immunology and MicrobiologyEcologyEcologyAntsfungipredator–prey interactionschemical defencesGeneral MedicinepyrazinesBiological EvolutionBody Fluids030104 developmental biologyPredatory Behaviorta1181General Agricultural and Biological SciencesProceedings of the Royal Society B : Biological Sciences
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De novo transcriptome assembly and developmental mode specific gene expression of Pygospio elegans

2017

Species with multiple different larval developmental modes are interesting models for the study of mechanisms underlying developmental mode transitions and life history evolution. Pygospio elegans, a small, tube-dwelling polychaete worm commonly found in estuarine and marine habitats around the northern hemisphere, is one species with variable developmental modes. To provide new genomic resources for studying P. elegans and to address the differences in gene expression between individuals producing offspring with different larval developmental modes, we performed whole transcriptome Illumina RNA sequencing of adult worms from two populations and prepared a de novo assembly of the P. elegans…

0106 biological sciences0301 basic medicineDe novo transcriptome assemblySequence assemblyBiology010603 evolutionary biology01 natural sciencesTranscriptome03 medical and health sciencesGene expressionAnimalsgeeniekspressioGenes Developmental14. Life underwaterEcology Evolution Behavior and SystematicsGeneticsLarvaPolychaeteGene Expression ProfilingfungiGene Expression Regulation DevelopmentalRNAMolecular Sequence AnnotationPolychaetaMarine invertebratesbiology.organism_classification030104 developmental biologyLarvagene expressionta1181TranscriptomeMicrosatellite RepeatsDevelopmental BiologyEvolution & Development
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