Search results for "A* algorithm"

Multiple infection dynamics has pronounced effects on the fitness of RNA viruses

2001

Several factors play a role during the replication and transmission of RNA viruses. First, as a consequence of their enormous mutation rate, complex mixtures of genomes are generated immediately after infection of a new host. Secondly, differences in growth and competition rates drive the selection of certain genetic variants within an infected host. Thirdly, but not less important, a random sampling occurs at the moment of viral infectious passage from an infected to a healthy host. In addition, the availability of hosts also influences the fate of a given viral genotype. When new hosts are scarce, different viral genotypes might infect the same host, adding an extra complexity to the comp…

The cost of replication fidelity in an RNA virus

2005

It is often argued that high mutation rates are advantageous for RNA viruses, because they confer elevated rates of adaptation. However, there is no direct evidence showing a positive correlation between mutation and adaptation rates among RNA viruses. Moreover, theoretical work does not argue in favor of this prediction. We used a series of vesicular stomatitis virus clones harboring single amino acid substitutions in the RNA polymerase to demonstrate that changes inducing enhanced fidelity paid a fitness cost, but that there was no positive correlation between mutation an adaptation rates. We demonstrate that the observed mutation rate in vesicular stomatitis virus can be explained by a t…

Sexual selection for genetic quality: disentangling the roles of male and female behaviour

2009

According to the good genes model of sexual selection, females choose males of good heritable genetic quality to obtain offspring with high fitness. However, better mating success of high-quality males can also be brought about by direct interference competition between males, or simply through elevated activity of high-quality males. We examined the roles of different processes leading to sexual selection for genetic quality in Drosophila montana. We manipulated genetic quality of male flies by inducing mutations with ionizing radiation. We then recorded the effects of inherited heterozygous mutations on several aspects of mating behaviour of males and females in two experiments. We found …

Inbreeding depression in intraspecific metabolic scaling

2013

Metabolic scaling (i.e., the relationship between the size and metabolic rate of organisms) has been suggested to explain a large variety of biological patterns from individual growth to species diversity. However, considerable disagreement remains regarding the underlying causes of metabolic scaling patterns, and what these patterns are. As in all biology, understanding metabolic scaling will require understanding its evolution by natural selection. We searched for evidence of natural selection on metabolic scaling indirectly by manipulating the genetic quality of male and female Drosophila montana flies with induced mutations and inbreeding, building on the notion that mutations and inbre…

2019

Codon composition, GC content and local RNA secondary structures can have a profound effect on gene expression, and mutations affecting these parameters, even though they do not alter the protein sequence, are not neutral in terms of selection. Although evidence exists that, in some cases, selection favours more stable RNA secondary structures, we currently lack a concrete idea of how many genes are affected within a species, and whether this is a universal phenomenon in nature. We searched for signs of structural selection in a global manner, analysing a set of 1 million coding sequences from 73 species representing all domains of life, as well as viruses, by means of our newly developed s…

Autosomal dominant Brown–Vialetto–Van Laere syndrome with UBQLN1 mutation

2013

Mutation in candidate genes account for a small minority of hypobetalipoproteinemias and NGS analysis support polygenicity in mutation-negative patie…

2020

Molecules and Morphology, Phylogenetics and Genetics

1994

Various explanations can be offered for the incongruence between phylogenetic hypotheses resulting from morphological and molecular data sets. Of these, the possibility that incongruence may result from the mutation of major morphogenetic genes leading to dramatic morphological divergence unaccompanied by equivalent change of the phylogenetic marker molecule(s) used is discussed in detail. As evidence for this hypothesis, several examples for such incongruence are surveyed. It seems possible that in many cases the genetic basis of the morphological characters responsible for the incongruence found may be simple, and that the genes involved may be homologous to genes known from mutant system…

Changes in chromosomal polymorphism when selecting for a neutral trait inDrosophila subobscura

1986

The changes which occurred in the chromosomal polymorphism ofDrosophila subobscura when selecting for abdominal bristle number were analysed. A decrease in the diversity of arrangements and an increase in homozygosity over the selection experiment were found. These changes were stronger in selection than in control lines.

Frequency of the HFE Gene Mutations in Five Italian Populations

2002

Abstract ABSTRACT Genetic hemochromatosis is an autosomal recessive disorder characterized by iron overload and a variety of clinical manifestations such as liver cirrhosis and arthropathy. It is the most common genetic disease of northern European populations. The principal gene responsible for hereditary hemochromatosis, designated HFE, is located on chromosome 6 in the HLA region. The single point mutation 845A, changing cysteine at position 282 to tyrosine (C282Y), in this gene has been identified as the main genetic basis of hereditary hemochromatosis. Two other mutations, 187G, a histidine to aspartate at amino acid 63 (H63D), and 193T, a serine to cysteine at amino acid 65 (S65C), ap…