Search results for "A* algorithm"

showing 10 items of 2538 documents

Diversifying selection on MHC class I in the house sparrow (Passer domesticus).

2009

10 pages; International audience; Genes of the major histocompatibility complex (MHC) are the most polymorphic loci known in vertebrates. Two main hypotheses have been put forward to explain the maintenance of MHC diversity: pathogen-mediated selection and MHC-based mate choice. Host-parasite interactions can maintain MHC diversity via frequency-dependent selection, heterozygote advantage, and diversifying selection (spatially and/or temporally heterogeneous selection). In this study, we wished to investigate the nature of selection acting on the MHC class I across spatially structured populations of house sparrows (Passer domesticus) in France. To infer the nature of the selection, we comp…

0106 biological sciencesMESH : Gene FlowMESH: Selection (Genetics)MESH: GeographyGenes MHC Class IMESH: Genetic MarkersBalancing selectionMESH : Microsatellite Repeats[ SDV.IMM.IA ] Life Sciences [q-bio]/Immunology/Adaptive immunology01 natural sciencesmicrosatellitesMESH: SparrowsMESH : Genetic MarkersMESH: AnimalsMESH: Genetic VariationMESH: Evolution MolecularGenetics0303 health scienceseducation.field_of_studyGeographybiology[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]MESH : GeographyMESH: Genes MHC Class I[ SDE.MCG ] Environmental Sciences/Global Changes[ SDV.BID.EVO ] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE][SDV.IMM.IA]Life Sciences [q-bio]/Immunology/Adaptive immunologyMate choiceMESH: Stochastic ProcessesMHC class IMESH : MutationSparrowsGene FlowGenetic MarkersMESH: Mutationbalancing selection[SDE.MCG]Environmental Sciences/Global ChangesPopulationMESH : Genetic DriftMESH: Genetics Populationchemical and pharmacologic phenomenaMESH : Stochastic ProcessesMajor histocompatibility complex010603 evolutionary biologyMESH : Genes MHC Class IEvolution Molecular03 medical and health sciencesMESH : Genetic VariationMHC class IGeneticsPasser domesticusMESH : Selection (Genetics)AnimalsMESH : Evolution MolecularSelection GeneticMESH: Genetic DrifteducationAllelesMESH: Gene FlowEcology Evolution Behavior and SystematicsSelection (genetic algorithm)030304 developmental biologyLocal adaptationIsolation by distanceStochastic Processes[ SDE.BE ] Environmental Sciences/Biodiversity and Ecologyhouse sparrowMESH: AllelesGenetic DriftGenetic Variationdiversifying selectionPasser domesticus.[ SDV.GEN.GA ] Life Sciences [q-bio]/Genetics/Animal geneticsMESH : Genetics Population[SDE.ES]Environmental Sciences/Environmental and Society[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal geneticsGenetics PopulationEvolutionary biologyMutationbiology.proteinMESH: Microsatellite RepeatsMESH : AnimalsMESH : Sparrows[SDE.BE]Environmental Sciences/Biodiversity and EcologyMESH : Alleles[ SDE.ES ] Environmental Sciences/Environmental and SocietyMicrosatellite Repeats
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Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

2009

46 pages, 4 tables, 6 figures, 3 additinoal files.

0106 biological sciencesMESH: Genome PlantArabidopsis thalianaGene regulatory networkArabidopsis01 natural sciencesTranscriptomeGene Expression Regulation PlantArabidopsisMESH: Gene Expression Regulation DevelopmentalCluster AnalysisGene Regulatory NetworksMESH: ArabidopsisMESH: EcosystemMESH: Models GeneticOligonucleotide Array Sequence AnalysisMESH: Gene Regulatory NetworksGenetics0303 health sciencesMESH: Stress MechanicalbiologyMESH: Genomicsfood and beveragesGene Expression Regulation DevelopmentalGenomicsPhenotypeAlgorithmsGenome PlantMESH: MutationSystems biologyGenomicsMESH: AlgorithmsComputational biologyMESH: Arabidopsis ProteinsMESH: Phenotype03 medical and health sciencesMESH: Gene Expression Profiling[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMESH: Gene Expression Regulation PlantEcosystem030304 developmental biologyModels GeneticMicroarray analysis techniquesArabidopsis ProteinsGene Expression ProfilingResearchfungiRobustness (evolution)biology.organism_classificationMESH: Cluster AnalysisGene expression profilingMutationMESH: Oligonucleotide Array Sequence AnalysisStress Mechanical010606 plant biology & botany
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Transfer of individuals as a means of investigating natural selection in operation.

2009

Populations of Philaenus spumarius (Homoptera) displaying colour polymorphism at stable equilibrium were subjected to the introduction of alien phenotypes. In an exchange experiment between populations of isolated islands, 2/3 of population A, from Allgrundet, was transferred to Porskobben, and 2/3 of population P from Porskobben to Allgrundet. The immediate result of the transfer was A-type allele frequencies on Porskobben and P-type frequencies on Allgrundet. After four generations, the pre-transfer frequencies were almost completely restored. This change implies strong island-specific selection pressures. The process was remarkably rapid in view of the mixed composition of the gene pools…

0106 biological sciencesMaleHomopteraPopulationPhilaenus spumariusZoology010603 evolutionary biology01 natural sciencesHemiptera03 medical and health sciencesTransformation GeneticGene FrequencyGeneticsAnimalsSelection GeneticeducationAllele frequencySelection (genetic algorithm)Alleles030304 developmental biology0303 health scienceseducation.field_of_studyNatural selectionPolymorphism GeneticbiologyEcologyPopulation sizeGeneral Medicinebiology.organism_classificationPhenotypeGenesFemaleGene poolHereditas
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Advantage of rare infanticide strategies in an invasion experiment of behavioural polymorphism

2012

Killing conspecific infants (infanticide) is among the most puzzling phenomena in nature. Stable polymorphism in such behaviour could be maintained by negative frequency-dependent selection (benefit of rare types). However, it is currently unknown whether there is genetic polymorphism in infanticidal behaviour or whether infanticide may have any fitness advantages when rare. Here we show genetic polymorphism in non-parental infanticide. Our novel invasion experiment confirms negative frequency-dependent selection in wild bank vole populations, where resource benefits allow an infanticidal strategy to invade a population of non-infanticidal individuals. The results show that infanticidal beh…

0106 biological sciencesMalePopulationGeneral Physics and AstronomyBiology010603 evolutionary biology01 natural sciencesGenetic correlationGeneral Biochemistry Genetics and Molecular BiologyArticleSex FactorsPolymorphism (computer science)AnimalseducationMaternal BehaviorSelection (genetic algorithm)Paternal BehaviorComputingMilieux_MISCELLANEOUSGeneticseducation.field_of_studyMultidisciplinaryModels StatisticalPolymorphism GeneticBehavior AnimalArvicolinaeGeneral Chemistrybiology.organism_classification010601 ecologyBank voleAggressionAnimals NewbornEvolutionary biologyMutationLinear ModelsFemale[SDE.BE]Environmental Sciences/Biodiversity and Ecology
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Postcopulatory sexual selection generates speciation phenotypes in Drosophila.

2013

Background: Identifying traits that reproductively isolate species and the selective forces underlying their divergence is a central goal of evolutionary biology and speciation research. There is growing recognition that postcopulatory sexual selection which can drive rapid diversification of interacting ejaculate and female reproductive tract traits that mediate sperm competition may be an engine of speciation. Conspecific sperm precedence (CSP) is a taxonomically widespread form of reproductive isolation but the selective causes and divergent traits responsible for CSP are poorly understood. Results: To test the hypothesis that postcopulatory sexual selection can generate reproductive iso…

0106 biological sciencesMaleReproductive IsolationGenetic SpeciationGreen Fluorescent ProteinsAllopatric speciation1100 General Agricultural and Biological SciencesBiology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyInseminationEcological speciation10127 Institute of Evolutionary Biology and Environmental Studies03 medical and health sciencesSexual Behavior AnimalSpecies Specificity1300 General Biochemistry Genetics and Molecular BiologyGenetic algorithmCopulationAnimalsSperm competition030304 developmental biologyGenetics0303 health sciencesAgricultural and Biological Sciences(all)Biochemistry Genetics and Molecular Biology(all)fungiReproductive isolationSpermSpermatozoaLuminescent ProteinsSexual selectionFertilizationta1181570 Life sciences; biology590 Animals (Zoology)Sperm HeadDrosophilaFemaleGeneral Agricultural and Biological SciencesSperm precedenceCurrent biology : CB
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Temperature as a modulator of sexual selection

2018

A central question in ecology and evolution is to understand why sexual selection varies so much in strength across taxa; it has long been known that ecological factors are crucial to this. Temperature is a particularly salient abiotic ecological factor that modulates a wide range of physiological, morphological and behavioural traits, impacting individuals and populations at a global taxonomic scale. Furthermore, temperature exhibits substantial temporal variation (e.g. daily, seasonally and inter-seasonally), and hence for most species in the wild sexual selection will regularly unfold in a dynamic thermal environment. Unfortunately, studies have so far almost completely neglected the rol…

0106 biological sciencesMaleSexual SelectionPopulationBiology010603 evolutionary biology01 natural sciencesbepress|Life Sciences|Ecology and Evolutionary BiologyGeneral Biochemistry Genetics and Molecular BiologySexual conflict03 medical and health sciencesbepress|Life SciencesHumansSelection Geneticbepress|Life Sciences|Ecology and Evolutionary Biology|Behavior and EthologyeducationSelection (genetic algorithm)030304 developmental biologyAbiotic componenteducation.field_of_study0303 health sciencesTemperaturesSexual conflictReproductive successReproductionTemperatureSelecció naturalPopulation viabilityMeta-analysisPhenotypeSexual selectionEvolutionary biology13. Climate actionSexual selectionTraitEvolutionary ecologyFemaleRapid environmental changeGeneral Agricultural and Biological Sciencesbepress|Life Sciences|Ecology and Evolutionary Biology|EvolutionEvolució (Biologia)
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Fishery-induced selection for slow somatic growth in European eel

2012

International audience; Both theoretical and experimental studies have shown that fishing mortality can induce adaptive responses in body growth rates of fishes in the opposite direction of natural selection. We compared body growth rates in European eel (Anguilla anguilla) from three Mediterranean stocks subject to different fishing pressure. Results are consistent with the hypotheses that i) fast-growing individuals are more likely to survive until sexual maturity than slow-growing ones under natural conditions (no fishing) and ii) fishing can select for slow-growing individuals by removing fast-growing ones. Although the possibility of human-induced evolution seems remote for a panmictic…

0106 biological sciencesMale[SDV]Life Sciences [q-bio]lcsh:MedicineMarine and Aquatic Sciences01 natural sciencesKeyWords Plus:FRESH-WATER ENVIRONMENTS; ANGUILLA-ANGUILLA L; SEX-DIFFERENTIATION; MORTALITY; LAGOONS; POPULATION; MATURATION; JUVENILE; BRACKISH; TRAITSCritically endangeredAUTMorphogenesisNatural SelectionSexual maturityBody SizeScopus Indexed keywords EMTREE medical terms: Anguilla (fish)article body growth controlled study eel endangered species experimental study fishery fishing growth rate mortality natural selection nonhuman theoretical study Anguilla (fish)animal body size female food industry growth development and aging male physiology reproduction Species Index: Anguilla anguilla Pisces MeSH: Anguilla Animals Body Size Female Fisheries Male Reproductionlcsh:ScienceJUVENILEPOPULATIONmedia_commonFreshwater EcologyPanmixiaMultidisciplinaryNatural selectionEcologyEcologyReproduction[SDE]Environmental SciencesFish <Actinopterygii>FemaleReproductionCoastal EcologyTRAITSResearch ArticleKeyWords Plus:FRESH-WATER ENVIRONMENTSEvolutionary ProcessesFRESH-WATER ENVIRONMENTSSettore BIO/07media_common.quotation_subjectFishingFisheriesMarine BiologyLAGOONSBiology010603 evolutionary biologyMATURATIONBRACKISHANGUILLA-ANGUILLA LAnimals14. Life underwaterBiologySelection (genetic algorithm)Growth ControlEvolutionary BiologySEX-DIFFERENTIATION010604 marine biology & hydrobiologyMORTALITYlcsh:RFisheries ScienceAnguillaFisheryEvolutionary EcologyEarth SciencesFRESH-WATER ENVIRONMENTS;ANGUILLA-ANGUILLA L;SEX-DIFFERENTIATION;MORTALITY;LAGOONS;POPULATION;MATURATION;JUVENILE;BRACKISH;TRAITSlcsh:QZoologyDevelopmental Biology
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Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA…

2020

Genetic variation is the fuel of evolution, with standing genetic variation especially important for short-term evolution and local adaptation. To date, studies of spatiotemporal patterns of genetic variation in natural populations have been challenging, as comprehensive sampling is logistically difficult, and sequencing of entire populations costly. Here, we address these issues using a collaborative approach, sequencing 48 pooled population samples from 32 locations, and perform the first continent-wide genomic analysis of genetic variation in European Drosophila melanogaster. Our analyses uncover longitudinal population structure, provide evidence for continent-wide selective sweeps, ide…

0106 biological sciencesMaleincipient sexual isolationQH301 BiologyAcclimatizationADNGenome Insect01 natural sciencesPopulation genomicsAdaptation; Clines; Demography; Population genomics; Selection; SNPs; Structural variants; Acclimatization; Altitude; Animals; DNA Viruses; Drosophila melanogaster; Europe; Genome Mitochondrial; Haplotypes; Insect Viruses; Male; Phylogeography; Polymorphism Single Nucleotide; Genome Insect; Genomic Structural Variation; Microbiota; Selection GeneticSDG 13 - Climate ActionComputingMilieux_MISCELLANEOUSeducation.field_of_study0303 health sciencesAltitude[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]PE&RCgeneettinen muunteluPhylogeographyDrosophila melanogasterLaboratory of GeneticsTransposable elementnorth-americanmahlakärpäsetSettore BIO/18 - GENETICAselectionLaboratorium voor Erfelijkheidsleeramino-acid polymorphism03 medical and health sciencesGeneticGeneticsAdaptation demographyMicrobiomeAdaptationPolymorphismeducationDrosophilaMolecular BiologySelectionEcology Evolution Behavior and SystematicsDemography[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]DNAchemistryEvolutionary biologyGenome MitochondrialGenomic Structural Variationinversion in(3r)payneAdaptationPopulation genomicsStructural variantsGenètica[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosisadaptation demographyCandidate genenucleotide polymorphismAcademicSubjects/SCI01180chemistry.chemical_compoundMelanogaster2. Zero hungerGenomebiologyMicrobiotaSingle NucleotideClinesclinesMitochondrialEuropepopulaatiogenetiikkatransposable elementsDrosophila melanogasterSNPsnatural-populationspopulation genomicsPopulationnext-generationDrosòfila melanogasterInsect Viruses010603 evolutionary biologyPolymorphism Single NucleotideQH301latitudinal clineGenetic variationAnimalsSelection GeneticSelection (genetic algorithm)DiscoveriesLocal adaptation030304 developmental biologylife-historyAcademicSubjects/SCI01130DNA Virusesstructural variantsDASbiology.organism_classificationHaplotypes13. Climate actionperimä[SDE.BE]Environmental Sciences/Biodiversity and EcologyInsectDNAMolecular Biology and Evolution
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Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes

2008

The rate of mutation is central to evolution. Mutations are required for adaptation, yet most mutations with phenotypic effects are deleterious. As a consequence, the mutation rate that maximizes adaptation will be some intermediate value. Here, we used digital organisms to investigate the ability of natural selection to adjust and optimize mutation rates. We assessed the optimal mutation rate by empirically determining what mutation rate produced the highest rate of adaptation. Then, we allowed mutation rates to evolve, and we evaluated the proximity to the optimum. Although we chose conditions favorable for mutation rate optimization, the evolved rates were invariably far below the optimu…

0106 biological sciencesMutation rateTime FactorsDigital organismsFitness landscapeQH301-705.5Biology010603 evolutionary biology01 natural sciencesCellular and Molecular Neuroscience03 medical and health sciences0302 clinical medicineGeneticsComputer SimulationBiology (General)Selection GeneticMolecular BiologyEcology Evolution Behavior and Systematics030304 developmental biology0303 health sciencesEvolutionary BiologyNatural selectionEcologyModels GeneticComputational Biology15. Life on landAdaptation PhysiologicalBiological EvolutionComputational Biology/Evolutionary ModelingReplication fidelityAsexual populationsEvolvabilityComputational Theory and MathematicsEvolutionary biologyModeling and SimulationViral evolutionMutation (genetic algorithm)MutationDNA Mismatch repairAdaptationAvida030217 neurology & neurosurgeryResearch Article
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Stabilizing natural selection on the early expression of a secondary sexual trait in a passerine bird

2004

Natural selection is a central tenet of evolutionary theory, yet the estimation of the direction and intensity of selection remains problematic. Here, we assess the strength of selection on the early expression of a secondary sexual ornament, bill colour, in male European blackbirds (Turdus merula) using 5 years of capture-mark-recapture (CMR) data. The best-fitting model consisted of a quadratic relationship between survival rate and bill colour, indicating stabilizing natural selection on the early expression of a secondary sexual trait. There was no evidence for sexual selection acting on bill colour in the first year. We suggest that the consideration of early selection and the adoption…

0106 biological sciencesNatural selectionbiologyEcology010603 evolutionary biology01 natural sciencesPasserine010601 ecologyExpression (architecture)Evolutionary biologySexual selectionbiology.animalTraitStabilizing selectionEcology Evolution Behavior and SystematicsEvolutionary theorySelection (genetic algorithm)Journal of Evolutionary Biology
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