Search results for "APT"
showing 10 items of 5479 documents
Genome Sequencing and Transcriptome Analysis Reveal Recent Species-Specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata)
2019
Gilthead sea bream is an economically important fish species that is remarkably well-adapted to farming and changing environments. Understanding the genomic basis of this plasticity will serve to orientate domestication and selective breeding toward more robust and efficient fish. To address this goal, a draft genome assembly was reconstructed combining short- and long-read high-throughput sequencing with genetic linkage maps. The assembled unmasked genome spans 1.24 Gb of an expected 1.59 Gb genome size with 932 scaffolds (~732 Mb) anchored to 24 chromosomes that are available as a karyotype browser at www.nutrigroup-iats.org/seabreamdb. Homology-based functional annotation, supported by R…
The antagonistic effect of UV radiation on warming or nitrate enrichment depends on ecotypes of freshwater macroalgae (Charophytes).
2019
Increases in ultraviolet radiation (UVR), a negative global change factor, affect aquatic primary producers. This effect is expected to be modulated by other global change factors, and to be different for populations adapted to different environments. A common garden experimental approach using freshwater green macroalgae, the cosmopolitan charophyte species Chara hispida and C. vulgaris, allowed us to test whether the beneficial increases in water temperature (T) and nitrate concentration (N) mitigate negative UVR effects. Also, whether these interactions would be not only species-specific but also according to the origin of the population; therefore, two populations of each species were u…
The Importance of Engaging Local People in Landscape Management – Experiences from an EU Project
2018
“Bull by the Horns” -project initiated landscape management and promoted biodiversity associated with diminishing High Nature Value farmland habitats in Finland. A specific focus was on grazed semi-natural grasslands and wood-pastures which are collectively referred to as traditional rural biotopes (TRBs). Collaboration among project workers, non-farming landowners, and cattle owners reintroduced grazing to abandoned pastures, and management was financed through agri-environmental payments. Using adaptive co-management principles, the project enabled collective definition of integrated site-specific management objectives. A better understanding of contemporary challenges and opportunities t…
Variation and covariation in infectivity, virulence and immunodepression in the host-parasite association Gammarus pulex-Pomphorhynchus laevis.
2009
Parasites often manipulate host immunity for their own benefit, either by exacerbating or suppressing the immune response and this may directly affect the expression of parasite virulence. However, genetic variation in immunodepression, which is a prerequisite to its evolution, and the relationship between immunodepression and virulence, have rarely been studied. Here, we investigated the variation among sibships of the acanthocephalan parasite, Pomphorhynchus laevis , in infecting and in immunodepressing its amphipod host, Gammarus pulex . We also assessed the covariation between infectivity, parasite-induced immune depression and host mortality (parasite virulence). We found that infecti…
Arabidopsis thaliana nicotianamine synthase 4 is required for proper response to iron deficiency and to cadmium exposure.
2013
International audience; The nicotianamine synthase (NAS) enzymes catalyze the formation of nicotianamine (NA), a non-proteinogenic amino acid involved in iron homeostasis. We undertook the functional characterization of AtNAS4, the fourth member of the Arabidopsis thaliana NAS gene family. A mutant carrying a T-DNA insertion in AtNAS4 (atnas4), as well as lines overexpressing AtNAS4 both in the atnas4 and the wild-type genetic backgrounds, were used to decipher the role of AtNAS4 in NA synthesis, iron homeostasis and the plant response to iron deficiency or cadmium supply. We showed that AtNAS4 is an important source for NA. Whereas atnas4 had normal growth in iron-sufficient medium, it dis…
Multidimensionality in parasite-induced phenotypic alterations: ultimate versus proximate aspects.
2012
SummaryIn most cases, parasites alter more than one dimension in their host phenotype. Although multidimensionality in parasite-induced phenotypic alterations (PIPAs) seems to be the rule, it has started to be addressed only recently. Here, we critically review some of the problems associated with the definition, quantification and interpretation of multidimensionality in PIPAs. In particular, we confront ultimate and proximate accounts, and evaluate their own limitations. We end up by introducing several suggestions for the development of future research, including some practical guidelines for the quantitative analysis of multidimensionality in PIPAs.
Immunity and Virulence in Bird-Parasite Interactions.
2010
8 pages; International audience; The interaction between hosts and parasites is characterized by the evolution of reciproca adaptations aiming at reducing the cost of infection (from the host point of view) and to optimize host exploitation (from the parasite point of view). Within this co-evolutionary scenario, the immune system takes a central role. The immune system has evolved to fight off parasitic attacks. However, immune defences cannot be deployed without costs which set a limit to the protective effect of immunity. Moreover, immune defences impose strong selection pressures on the parasite and can favour the evolution of more virulent pathogen strains. In this article, we will disc…
Bird and amphipod parasites illustrate a gradient from adaptation to exaptation in complex life cycle.
2010
6 pages; International audience; Trophically transmitted parasites modify the phenotype of their hosts, sometimes in a way that facilitates transmission. Parasite-induced changes can be either part of a manipulative strategy evolved to improve the transmission success of the parasite, or simply by-products of infection with no health effect. In the former case, manipulation is regarded as a parasite adaptation driven by the probability of being eaten by a suitable next host. Here, we consider the fact that manipulation may also be an 'exaptation': a trait that evolved for a certain use, but which has been co-opted for a new use. According to this view, features built by natural selection fo…
Population differentiation for adaptive traits and their underlying loci in forest trees : theoretical predictions and experimental results
2000
Population differentiation has been investigated in forest trees since provenance tests were established. A vast amount of results has accumulated in numerous reports and articles about intraspecific variation, that have been summarized in textbooks about forest genetics (Wright 1976). Provenance differences exist for almost any adaptive trait that has been measured in provenance test and for almost any species. These results contrast markedly with data based on biochemical markers as isozymes. As shown by the literature review by Hamrick et al. (1992), forest trees usually exhibit extremely low levels of differentiation for isozymes. Results derived from isozyme surveys are confirmed by ot…
Linking present environment and the segregation of reproductive modes (geographical parthenogenesis) in Eucypris virens (Crustacea: Ostracoda)
2013
Aim Geographical parthenogenesis – in which parthenogenetic populations are more widely distributed than sexually reproducing populations – is observed in many plant and animal species. Many hypotheses have been proposed to account for this biogeographical pattern, and these often invoke historical processes such as the influence of glaciation. However, there are relatively few empirical studies of the contemporary factors associated with geographical parthenogenesis. The aim of this study was to understand its causes by linking contemporary environmental gradients with reproductive modes in the freshwater ostracod Eucypris virens. Location Europe and North Africa. Methods We sampled popula…