Search results for "Amniote"

showing 10 items of 79 documents

Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new multilocus sequence typing scheme

2018

Syphilis is an important public health problem and an increasing incidence has been noted in recent years. Characterization of strain diversity through molecular data plays a critical role in the epidemiological understanding of this re-emergence. We here propose a new high-resolution multilocus sequence typing (MLST) scheme for Treponema pallidum subsp. pallidum (TPA). We analyzed 30 complete and draft TPA genomes obtained directly from clinical samples or from rabbit propagated strains to identify suitable typing loci and tested the new scheme on 120 clinical samples collected in Switzerland and France. Our analyses yielded three loci with high discriminatory power: TP0136, TP0548, and TP…

10207 Department of AnthropologyArtificial Gene Amplification and ExtensionGene mutationPathology and Laboratory MedicineFrance/epidemiologyBiochemistryPolymerase Chain Reactionlaw.inventionSwitzerland/epidemiologylcsh:SciencePhylogenyMammalsBacterialEukaryotaGeneral MedicineMacrolides/pharmacologyMultilocus Sequence Typing/methods3. Good healthBacterial PathogensNucleic acidsMedical MicrobiologyLeporidsMacrolidesAlleles; Anti-Bacterial Agents/pharmacology; DNA Bacterial/genetics; France/epidemiology; Genome Bacterial; Genotype; Globus Pallidus; Macrolides/pharmacology; Multilocus Sequence Typing/methods; Phylogeny; Polymorphism Single Nucleotide; RNA Ribosomal 23S/genetics; Sequence Analysis DNA/methods; Switzerland/epidemiology; Syphilis/epidemiology; Treponema pallidum/geneticsGeneral Agricultural and Biological SciencesSwitzerlandGenotypeSequence analysis030106 microbiologySexually Transmitted Diseases1100 General Agricultural and Biological SciencesGlobus PallidusMicrobiologyAnti-Bacterial Agents/pharmacology10127 Institute of Evolutionary Biology and Environmental Studies03 medical and health sciences1300 General Biochemistry Genetics and Molecular Biology23S ribosomal RNAGeneticsTypingSyphilisPolymorphismNon-coding RNAMolecular Biology TechniquesMicrobial PathogensMolecular BiologyAllelesRibosomal1000 MultidisciplinaryGenitourinary Infectionslcsh:ROrganismsBiology and Life SciencesDNATropical DiseasesTreponema pallidum/genetics030104 developmental biologyGenetic LociGeneral Biochemistrylcsh:QMultilocus Sequence Typing0301 basic medicineBacterial DiseasesBacterial/geneticslcsh:MedicineTreponematosesGeographical LocationslawGenotypeMedicine and Health Sciences23S/geneticsTreponema PallidumPolymerase chain reactionGeneticsMultidisciplinaryTreponemaGenome10177 Dermatology ClinicSingle NucleotideAnimal Models10218 Institute of Legal MedicineAnti-Bacterial AgentsDNA/methodsEuropeRNA Ribosomal 23SInfectious DiseasesRibosomal RNAExperimental Organism SystemsVertebratesFranceRabbitsPathogensSequence AnalysisResearch ArticleNeglected Tropical DiseasesDNA BacterialCell biologyCellular structures and organellesUrology610 Medicine & healthGenetics and Molecular BiologyBiologyResearch and Analysis MethodsPolymorphism Single NucleotideAnimalsEuropean Unionddc:613Syphilis/epidemiologySequence Analysis DNAbiology.organism_classificationddc:616.8People and PlacesAmniotesMultilocus sequence typingRNARibosomesGenome BacterialPLoS ONE
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Tick-borne pathogens in Ixodes ricinus ticks collected from migratory birds in southern Norway

2020

Birds are important hosts for the first life stages of the Ixodes ricinus tick and they can transport their parasites over long distances. The aim of this study was to investigate the prevalence of Borrelia burgdorferi sensu lato, Anaplasma phagocytophilum, Neoehrlichia mikurensis and Rickettsia helvetica in ticks collected from migratory birds in Norway. A total of 815 Ixodes ricinus ticks from 216 birds trapped at Lista Bird Observatory in southern Norway during spring and autumn migration in 2008 were analysed by real-time PCR. B. burgdorferi s. l. was the most prevalent pathogen, detected in 6.1% of the ticks. The prevalence of N. mikurensis, A. phagocytophilum and R. helvetica was 1.2%…

Bacterial Diseases0301 basic medicineLife CyclesSocial SciencesDisease VectorsPathology and Laboratory Medicinemedicine.disease_causePolymerase Chain ReactionTicks0302 clinical medicineMedicine and Health SciencesPrevalencePsychologyRickettsiaFlowering PlantsTick-borne diseaseMultidisciplinaryAnimal BehaviorCoinfectionNorwayQREukaryotaPlantsBacterial PathogensSpringAnaplasmataceaeInfectious DiseasesMedical MicrobiologyTick-Borne DiseasesVertebratesMedicineSeasonsPathogensResearch ArticleAnaplasma phagocytophilumDNA BacterialIxodes ricinusBorrelia BurgdorferiArthropodaScience030106 microbiology030231 tropical medicineZoologyBiologyTickMicrobiologyBirds03 medical and health sciencesBorreliaArachnidaparasitic diseasesmedicineVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470AnimalsBorrelia burgdorferiMicrobial PathogensBehaviorBacteriaIxodesRicinusBird DiseasesBorreliaOrganismsBiology and Life Sciencesbiology.organism_classificationmedicine.diseasebacterial infections and mycosesInvertebratesBorrelia InfectionAnaplasma phagocytophilumNymphsTick InfestationsSpecies InteractionsRickettsia helveticaAmniotesEarth SciencesAnimal MigrationIxodesZoologyDevelopmental Biology
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Importance of Propionibacterium acnes hemolytic activity in human intervertebral discs: A microbiological study

2018

Most patients with chronic lower back pain (CLBP) exhibit degenerative disc disease. Disc specimens obtained during initial therapeutic discectomies are often infected/colonized with Propionibacterium acnes, a Gram-positive commensal of the human skin. Although pain associated with infection is typically ascribed to the body's inflammatory response, the Gram-positive bacterium Staphylococcus aureus was recently observed to directly activate nociceptors by secreting pore-forming α-hemolysins that disrupt neuronal cell membranes. The hemolytic activity of P. acnes in cultured disc specimens obtained during routine therapeutic discectomies was assessed through incubation on sheep-blood agar. T…

Bacterial DiseasesSensory ReceptorsPhysiologyStaphylococcusCellSocial SciencesHuman skinmedicine.disease_causePathology and Laboratory MedicineToxicologyMass SpectrometryAnalytical ChemistryPathogenesis0302 clinical medicineSpectrum Analysis TechniquesINFECTIONMedicine and Health SciencesNERVEAgarToxinsPsychologyStaphylococcus AureusIntervertebral DiscPOPULATIONMammals030222 orthopedicsMultidisciplinarybiologyQSTAPHYLOCOCCUSREukaryotaNociceptorsASSOCIATIONMatrix-Assisted Laser Desorption Ionization Mass SpectrometryRuminantsPREVALENCE3. Good healthBody FluidsBacterial PathogensChemistrymedicine.anatomical_structureBloodInfectious DiseasesStaphylococcus aureusMedical MicrobiologyPhysical SciencesVertebratesMedicineSensory PerceptionAnatomyPathogensLOW-BACK-PAINResearch ArticleSignal Transductionfood.ingredientScienceLower Back PainToxic AgentsPainResearch and Analysis MethodsMicrobiologyHemolysisDegenerative disc diseaseMicrobiology03 medical and health sciencesPropionibacterium acnesfoodSigns and SymptomsDiagnostic MedicinemedicineAnimalsHumansPropionibacterium acnesMicrobial PathogensStaphylococcal InfectionGram-Positive Bacterial InfectionsINNERVATIONSheepBacteriabusiness.industryOrganismsBiology and Life SciencesCell Biologymedicine.diseasebiology.organism_classificationAmniotesChronic DiseasebusinessLow Back Pain030217 neurology & neurosurgeryBacteriaNeurosciencePLoS ONE
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Complementary methods assessing short and long-term prey of a marine top predator ‒ Application to the grey seal-fishery conflict in the Baltic Sea.

2019

The growing grey seal (Halichoerus grypus) population in the Baltic Sea has created conflicts with local fisheries, comparable to similar emerging problems worldwide. Adequate information on the foraging habits is a requirement for responsible management of the seal population. We investigated the applicability of available dietary assessment methods by comparing morphological analysis and DNA metabarcoding of gut contents (short-term diet; n = 129/125 seals, respectively), and tissue chemical markers i.e. fatty acid (FA) profiles of blubber and stable isotopes (SIs) of liver and muscle (mid- or long-term diet; n = 108 seals for the FA and SI markers). The methods provided complementary inf…

Baltic StatespredatorsMolecular biologyTroutSeals EarlessMarine and Aquatic SciencesPredationSocial Sciencespredator populationMolecular biology assays and analysis techniquesFATTY-ACID-COMPOSITIONDIET COMPOSITIONPsychologyForagingpetokannatMammalssaaliseläimetSealsEcologyAnimal BehaviorNucleic acid analysisDatabase and informatics methodsFatty AcidsQSequence analysisREukaryotaTrophic InteractionsCommunity EcologyOsteichthyesVertebrates1181 Ecology evolutionary biologyMedicinepreyHALICHOERUS-GRYPUSDNA analysisFOOD-WEBResearch Articlegrey sealBioinformaticsECOLOGICAL REGIME SHIFTSScienceFisheriesMarine BiologyPHOCA-HISPIDA-BOTNICAfisherypetoeläimetGeneticsAnimalsGenetikMarine MammalsDNA sequence analysisEcosystemRINGED SEALSEkologiBehaviorSTABLE-ISOTOPE ANALYSISDNA-analyysiBLUBBEREcology and Environmental SciencesOrganismsBiology and Life SciencesCARBON ISOTOPESResearch and analysis methodskalatalousMolecular biology techniquesFishAmniotesEarth Sciences1182 Biochemistry cell and molecular biologyhalli (hylkeet)ZoologyPLoS ONE
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Development and characterization of an experimental model of diet-induced metabolic syndrome in rabbit

2017

Metabolic syndrome (MetS) has become one of the main concerns for public health because of its link to cardiovascular disease. Murine models have been used to study the effect of MetS on the cardiovascular system, but they have limitations for studying cardiac electrophysiology. In contrast, the rabbit cardiac electrophysiology is similar to human, but a detailed characterization of the different components of MetS in this animal is still needed. Our objective was to develop and characterize a diet-induced experimental model of MetS that allows the study of cardiovascular remodeling and arrhythmogenesis. Male NZW rabbits were assigned to control (n = 15) or MetS group (n = 16), fed during 2…

Blood GlucoseMale0301 basic medicinePhysiologylcsh:MedicineBlood Pressure030204 cardiovascular system & hematologyVascular MedicineBiochemistryEatingchemistry.chemical_compound0302 clinical medicineGlucose MetabolismDietary SucroseBlood plasmaMedicine and Health Scienceslcsh:ScienceMammalsMetabolic SyndromeMultidisciplinaryLiver DiseasesFatty liverAnimal ModelsBody FluidsBloodExperimental Organism SystemsPhysiological ParametersLiverVertebratesHypertensionMetabolomeCarbohydrate MetabolismRabbitsAnatomyResearch Articlemedicine.medical_specialtyMean arterial pressureBilirubinDiastoleGastroenterology and HepatologyBiologyResearch and Analysis MethodsDiet High-FatBlood Plasma03 medical and health sciencesInternal medicineGlucose IntolerancemedicineAnimalsMetabolomicsObesityNuclear Magnetic Resonance BiomolecularNutritionAnalysis of VarianceBody Weightlcsh:ROrganismsBiology and Life Sciencesmedicine.diseaseDietFatty LiverDisease Models AnimalMetabolism030104 developmental biologyEndocrinologyBlood pressurechemistryAmnioteslcsh:QMetabolic syndromeSteatosisPLOS ONE
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High level of intrinsic phenotypic antimicrobial resistance in enterobacteria from terrestrial wildlife in Gabonese national parks.

2021

Data on the prevalence of antibiotic resistance in Enterobacteriaceae in African wildlife are still relatively limited. The aim of this study was to estimate the prevalence of phenotypic intrinsic and acquired antimicrobial resistance of enterobacteria from several species of terrestrial wild mammals in national parks of Gabon. Colony culture and isolation were done using MacConkey agar. Isolates were identified using the VITEK 2 and MALDI-TOF methods. Antibiotic susceptibility was analysed and interpreted according to the European Committee on Antimicrobial Susceptibility Testing guidelines. The preliminary test for ESBL-producing Enterobacteriaceae was performed by replicating enterobacte…

CefotaximeKlebsiella pneumoniaeParks RecreationalSocial SciencesWildlifePathology and Laboratory MedicineKlebsiella Pneumoniaechemistry.chemical_compoundFecesKlebsiellaMedicine and Health SciencesPrevalencePsychologyMammalsMultidisciplinarybiologyAnimal BehaviorQEnterobacteriaceae InfectionsREukaryotaCitrobacter freundiiBacterial PathogensAnti-Bacterial AgentsPhenotypeMedical MicrobiologyAnimal SocialityVertebratesApesMedicinePathogensMandrillusMacConkey agarKlebsiella Oxytocamedicine.drugResearch ArticlePrimatesGorillasScienceAnimals WildMicrobial Sensitivity TestsProteus Mirabilisbeta-LactamsKlebsiella variicolaMicrobiologybeta-Lactam Resistancebeta-LactamasesMicrobiologyEnterobacteriaceaeMicrobial ControlEnterobacter cloacaemedicineEscherichia coliAnimalsGabonMicrobial PathogensPharmacologyBehaviorGorilla gorillaBacteriaOrganismsBiology and Life SciencesKlebsiella oxytocabiology.organism_classificationProteus mirabilischemistryAntibiotic ResistanceAmniotesbacteriaAntimicrobial ResistanceEnterobacter cloacaeZoologyPLoS ONE
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MetNet: A two-level approach to reconstructing and comparing metabolic networks

2021

Metabolic pathway comparison and interaction between different species can detect important information for drug engineering and medical science. In the literature, proposals for reconstructing and comparing metabolic networks present two main problems: network reconstruction requires usually human intervention to integrate information from different sources and, in metabolic comparison, the size of the networks leads to a challenging computational problem. We propose to automatically reconstruct a metabolic network on the basis of KEGG database information. Our proposal relies on a two-level representation of the huge metabolic network: the first level is graph-based and depicts pathways a…

Computer scienceEnzyme MetabolismMetabolic networkcomputer.software_genreBiochemistryInfographics0302 clinical medicineCluster AnalysisEnzyme ChemistryData ManagementMammals0303 health sciencesMultidisciplinaryBasis (linear algebra)Settore INF/01 - InformaticaQRChemical ReactionsEukaryotaGraphChemistryVertebratesPhysical SciencesMedicineCarbohydrate MetabolismData miningMetabolic PathwaysComputational problemGraphsNetwork AnalysisMetabolic Networks and PathwaysResearch ArticleComputer and Information SciencesComputingMethodologies_SIMULATIONANDMODELINGScience03 medical and health sciencesMetabolic NetworksSimilarity (psychology)Xenobiotic MetabolismAnimalsHumansMetabolomicsKEGGRepresentation (mathematics)Symbiosis030304 developmental biologyData VisualizationOrganismsBiology and Life SciencesMetabolismMetabolic pathwayComputingMethodologies_PATTERNRECOGNITIONMetabolismAmniotesEnzymologycomputerZoology030217 neurology & neurosurgerySoftwarePLoS ONE
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Endovascular stentectomy using the snare over stent-retriever (SOS) technique: An experimental feasibility study

2017

PLoS one 12(5), e0178197 (2017). doi:10.1371/journal.pone.0178197

GlycerolSwinePhysiologylcsh:Medicine030218 nuclear medicine & medical imaging0302 clinical medicinePig ModelsBlood FlowMedicine and Health SciencesMedicinelcsh:ScienceData flow modelClinical scenarioMammalsMultidisciplinaryExperimental DesignEndovascular ProceduresVasospasmAnimal ModelsProsthesis FailureBody FluidsPhysical sciencesChemistryBloodExperimental Organism SystemsResearch DesignVertebratesFemaleStentsRadiologyAnatomyResearch ArticleBiotechnologymedicine.medical_specialtyCathetersSurgical and Invasive Medical ProceduresMonomers (Chemistry)Research and Analysis Methods03 medical and health sciencesAnimal modelText miningIn vivoBlood vessel prosthesisAnimalsHumansPolymer chemistryStent retrieverbusiness.industrylcsh:ROrganismsBiology and Life Sciencesmedicine.diseaseBlood Vessel ProsthesisDisease Models AnimalStent ImplantationAmniotesFeasibility StudiesMedical Devices and Equipmentlcsh:Qbusiness030217 neurology & neurosurgeryPLOS ONE
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Pesticides and conservation of large ungulates: Health risk to European bison from plant protection products as a result of crop depredation.

2020

The coexistence of large mammals and humans in the contemporary landscape is a big challenge for conservationists. Wild ungulates that forage on arable fields are exposed to the negative effects of pesticides, and this problem also applies to protected species for which intoxication by pesticides may pose a health risk and directly affect the effectiveness of conservation efforts. In this paper we assessed the threat posed by pesticides to the European bison Bison bonasus, a species successfully restituted after being extinct in the wild. We studied samples of B. bonasus liver from three free-living populations in Poland (Białowieska, Knyszyńska, and Borecka forests) and captive individuals…

Male0106 biological sciencesForests010501 environmental sciences01 natural sciencesMass SpectrometryGeographical LocationsFungicidesMammalseducation.field_of_studyMultidisciplinaryBisonEcologyExtinct in the wildOrganic CompoundsQREukaryotaAgricultureTerrestrial EnvironmentsEuropeChemistryLiverVertebratesPhysical SciencesMedicineFemaleArable landAgrochemicalsResearch ArticleConservation of Natural ResourcesSciencePopulationWildlifeZoologyCropsAnimals WildBiology010603 evolutionary biologyEcosystemsBovinesNitrilesAnimalsEuropean UnionPesticidesAcetonitrileeducation0105 earth and related environmental sciencesPesticide residuebusiness.industryEcology and Environmental SciencesOrganic ChemistryOrganismsChemical CompoundsBiology and Life SciencesPesticideAgricultureAmniotesPeople and PlacesConservation statusPest ControlPolandbusinessCrop SciencePLoS ONE
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Do bank voles (Myodes glareolus) trapped in live and lethal traps show differences in tick burden?

2020

In studies assessing tick abundance, the use of live traps to capture and euthanize rodent hosts is a commonly used method to determine their burden. However, captive animals can experience debilitating or fatal capture stress as a result prior to collection. An alternative method is the use of lethal traps, but this can potentially lead to tick drop-off between the time of capture and collection. In this study, in order to determine whether subjecting animals to capture stress is inevitable, we tested the difference in sheep tick (Ixodes ricinus) larval burdens between bank voles (Myodes glareolus) captured alive and euthanized, and lethally trapped bank voles. During 2017 and 2018, 1318 b…

Male0106 biological sciencesLife CyclesRodentMyodes glareolusDisease Vectors01 natural sciencesLarvaeMedical ConditionsTicks0302 clinical medicineMedicine and Health SciencesFlowering PlantsMammalsAlternative methodsLarvaMultidisciplinaryArvicolinaeNorwayQREukaryotaRuminantsPlantsSpringInfectious DiseasesLarvaEpidemiological MonitoringVertebratesMedicineFemaleSeasonsSex ratioResearch ArticleIxodes ricinusArthropodaScience030231 tropical medicineZoologyBiologyTickRodents010603 evolutionary biology03 medical and health sciencesbiology.animalArachnidaAnimalsCollection methodsIxodesEuthanasiaRicinusDeerVolesOrganismsBiology and Life Sciencesbiology.organism_classificationInvertebratesTick InfestationsSpecies InteractionsAmniotesEarth SciencesZoologyDevelopmental BiologyVDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480
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