Search results for "Analysis"

showing 10 items of 26772 documents

Infection-induced chromatin modifications facilitate translocation of herpes simplex virus capsids to the inner nuclear membrane

2021

Herpes simplex virus capsids are assembled and packaged in the nucleus and move by diffusion through the nucleoplasm to the nuclear envelope for egress. Analyzing their motion provides conclusions not only on capsid transport but also on the properties of the nuclear environment during infection. We utilized live-cell imaging and single-particle tracking to characterize capsid motion relative to the host chromatin. The data indicate that as the chromatin was marginalized toward the nuclear envelope it presented a restrictive barrier to the capsids. However, later in infection this barrier became more permissive and the probability of capsids to enter the chromatin increased. Thus, although …

virusesGene ExpressionVirus ReplicationPathology and Laboratory Medicineherpes simplex -virusChlorocebus aethiopsCapsidsMedicine and Health SciencesSimplexvirusBiology (General)Mass DiffusivityStainingChromosome BiologyPhysicsChromatinChemistryMedical MicrobiologyViral PathogensPhysical SciencesVirusesHerpes Simplex Virus-1EpigeneticsCellular Structures and OrganellesPathogenskapsidiResearch ArticleHerpesvirusesNuclear EnvelopeQH301-705.5Biological Transport ActiveViral StructureResearch and Analysis MethodsinfektiotMicrobiologydiffuusio (fysikaaliset ilmiöt)CapsidNuclear MembraneVirologyGeneticsAnimalsherpesviruksetVero CellsMicrobial PathogensCell NucleusChemical PhysicsOrganismsBiology and Life SciencesHerpes SimplexCell Biologybiochemical phenomena metabolism and nutritionRC581-607Viral ReplicationHerpes Simplex VirusNuclear StainingSpecimen Preparation and TreatmentImmunologic diseases. AllergyDNA viruses
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Biochemical and structural analysis of the NS5B RNA-dependent RNA polymerase of the hepatitis C virus.

2000

Hepatitis C virus (HCV), the major causative agent of chronic and sporadic non-A, non-B hepatitis worldwide, is a distinct member of the Flaviviridae virus family. These viruses have in common a plus-strand RNA genome that is replicated in the cytoplasm of the infected cell via minus-strand RNA intermediates. Owing to the lack of reliable cell culture systems and convenient animal models for HCV, the mechanisms governing RNA replication are not known. As a first step towards the development of appropriate in vitro systems, we expressed the NS5B RNA-dependent RNA polymerase (RdRp) in insect cells, purified the protein to near homogeneity and studied its biochemical properties. It is a primer…

virusesHepatitis C virusGenetic VectorsRNA-dependent RNA polymeraseHepacivirusViral Nonstructural Proteinsmedicine.disease_causeCell LineSubstrate Specificitychemistry.chemical_compoundTranscription (biology)Sequence Analysis ProteinVirologyRNA polymeraseRibavirinmedicineHumansNS5BPolymeraseHepatologybiologyRNANucleosidesDNA-Directed RNA PolymerasesRNA-Dependent RNA PolymeraseVirologyRecombinant ProteinsNS2-3 proteaseInfectious DiseaseschemistryMutationbiology.proteinRNABaculoviridaeJournal of viral hepatitis
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Molecular Characterization of a Variant of Bacillus anthracis-Specific Phage AP50 with Improved Bacteriolytic Activity▿ †

2008

ABSTRACT The genome sequence of a Bacillus anthracis -specific clear plaque mutant phage, AP50c, contains 31 open reading frames spanning 14,398 bp, has two mutations compared to wild-type AP50t, and has a colinear genome architecture highly similar to that of gram-positive Tectiviridae phages. Spontaneous AP50c-resistant B. anthracis mutants exhibit a mucoid colony phenotype.

virusesMutantMolecular Sequence DataMutation MissenseGenetics and Molecular BiologyBacillus PhagesGenome ViralViral Plaque AssayApplied Microbiology and BiotechnologySyntenyBacteriophageBacteriolysisGene OrderPoint MutationBacillus (shape)Whole genome sequencingGeneticsEcologybiologyBase SequenceTectivirusVirionSequence Analysis DNAbiology.organism_classificationBacillus anthracisOpen reading frameBacillus anthracisDNA ViralTectiviridaeFood ScienceBiotechnologyTectiviridae
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Game-Theoretic Approach to Hölder Regularity for PDEs Involving Eigenvalues of the Hessian

2021

AbstractWe prove a local Hölder estimate for any exponent $0<\delta <\frac {1}{2}$ 0 < δ < 1 2 for solutions of the dynamic programming principle $$ \begin{array}{@{}rcl@{}} u^{\varepsilon} (x) = \sum\limits_{j=1}^{n} \alpha_{j} \underset{\dim(S)=j}{\inf} \underset{|v|=1}{\underset{v\in S}{\sup}} \frac{u^{\varepsilon} (x + \varepsilon v) + u^{\varepsilon} (x - \varepsilon v)}{2} \end{array} $$ u ε ( x ) = ∑ j = 1 n α j inf dim ( S ) = j sup v ∈ S | v | = 1 u ε ( x + ε v ) + u ε ( x − ε v ) 2 with α1,αn > 0 and α2,⋯ ,αn− 1 ≥ 0. The proof is based on a new coupling idea from game theory. As an application, we get the same regularity estimate for viscosity solutions of the PDE $…

viscosity solutionosittaisdifferentiaaliyhtälötMathematics::Functional AnalysisStatistics::Theory91A05 91A15 35D40 35B65Mathematics::Dynamical Systemsholder estimateMathematics::Analysis of PDEsmatemaattinen optimointifully nonlinear PDEsdynamic programming principleMathematics - Analysis of PDEsMathematics::ProbabilityFOS: Mathematicspeliteoriaeigenvalue of the HessianAnalysisAnalysis of PDEs (math.AP)estimointi
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Equivalence of viscosity and weak solutions for a $p$-parabolic equation

2019

AbstractWe study the relationship of viscosity and weak solutions to the equation $$\begin{aligned} \smash {\partial _{t}u-\varDelta _{p}u=f(Du)}, \end{aligned}$$ ∂ t u - Δ p u = f ( D u ) , where $$p>1$$ p > 1 and $$f\in C({\mathbb {R}}^{N})$$ f ∈ C ( R N ) satisfies suitable assumptions. Our main result is that bounded viscosity supersolutions coincide with bounded lower semicontinuous weak supersolutions. Moreover, we prove the lower semicontinuity of weak supersolutions when $$p\ge 2$$ p ≥ 2 .

viscosity solutionosittaisdifferentiaaliyhtälötPure mathematics35K92 35J60 35D40 35D30 35B51Mathematics::Analysis of PDEscomparison principleweak solutionparabolic p-LaplacianViscosityMathematics (miscellaneous)Mathematics - Analysis of PDEsBounded functionFOS: Mathematicsgradient termEquivalence (measure theory)MathematicsAnalysis of PDEs (math.AP)
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Hölder gradient regularity for the inhomogeneous normalized p(x)-Laplace equation

2022

We prove the local gradient Hölder regularity of viscosity solutions to the inhomogeneous normalized p(x)-Laplace equation −Δp(x)Nu=f(x), where p is Lipschitz continuous, inf⁡p>1, and f is continuous and bounded. peerReviewed

viscosity solutionosittaisdifferentiaaliyhtälötnon-divergence form equationHölder gradient regularityinhomogeneous equationApplied Mathematicsnormalized equationp-LaplaceAnalysisJournal of Mathematical Analysis and Applications
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Hölder regularity for the gradient of the inhomogeneous parabolic normalized p-Laplacian

2018

In this paper, we study an evolution equation involving the normalized [Formula: see text]-Laplacian and a bounded continuous source term. The normalized [Formula: see text]-Laplacian is in non-divergence form and arises for example from stochastic tug-of-war games with noise. We prove local [Formula: see text] regularity for the spatial gradient of the viscosity solutions. The proof is based on an improvement of flatness and proceeds by iteration.

viscosity solutionsApplied MathematicsGeneral Mathematicsta111010102 general mathematicsMathematical analysisparabolic01 natural sciencesNoise (electronics)non-homogeneouslocal C-alpha regularityTerm (time)010101 applied mathematicsViscosityBounded functionNon homogeneousEvolution equationp-Laplacian0101 mathematicsnormalized p-LaplacianFlatness (mathematics)MathematicsCommunications in Contemporary Mathematics
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Regularity for nonlinear stochastic games

2015

We establish regularity for functions satisfying a dynamic programming equation, which may arise for example from stochastic games or discretization schemes. Our results can also be utilized in obtaining regularity and existence results for the corresponding partial differential equations. peerReviewed

viscosity solutionsDiscretization01 natural sciencesMathematics - Analysis of PDEsBellman equationComputingMethodologies_SYMBOLICANDALGEBRAICMANIPULATIONFOS: MathematicsApplied mathematicstug-of-war0101 mathematicsMathematics - Optimization and ControlMathematical PhysicsMathematicsstokastiset prosessitPartial differential equationApplied Mathematics91A15 35J92 35B65 35J60 49N60010102 general mathematicsta111dynamic programming principletug-of-war with noise with space dependent probabilities010101 applied mathematicsNonlinear systemOptimization and Control (math.OC)p-LaplaceAnalysisAnalysis of PDEs (math.AP)
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Remarks on regularity for p-Laplacian type equations in non-divergence form

2018

We study a singular or degenerate equation in non-divergence form modeled by the $p$-Laplacian, $$-|Du|^\gamma\left(\Delta u+(p-2)\Delta_\infty^N u\right)=f\ \ \ \ \text{in}\ \ \ \Omega.$$ We investigate local $C^{1,\alpha}$ regularity of viscosity solutions in the full range $\gamma>-1$ and $p>1$, and provide local $W^{2,2}$ estimates in the restricted cases where $p$ is close to 2 and $\gamma$ is close to 0.

viscosity solutionsintegrability of second derivativesType (model theory)01 natural sciencesDivergencelocal C1ViscosityMathematics - Analysis of PDEsFOS: Mathematicspartial differential equations0101 mathematicsMathematicsMathematical physicsosittaisdifferentiaaliyhtälötα regularityApplied Mathematics010102 general mathematicsta111p-Laplacianlocal C1α regularityviskositeettiDegenerate equation35J60 35B65 35J92010101 applied mathematicsviscosityp-LaplacianAnalysisAnalysis of PDEs (math.AP)Journal of Differential Equations
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Passive Control of Linear Structures Equipped with non-Linear Viscous Dampers and Amplification Mechanism

2008

Fluid damper devices in civil structures such as buildings or bridges are commonly used as energy absorbers for seismic protection. The problem in the response analysis of structures with filled dampers mainly consists in the fact that, due to the strongly nonlinear behavior of such equipments, the response spectrum technique fails. Moreover, in order to enhance the damping effect various toggle brace configurations have been recently proposed. In this paper by using the concept of power spectral density function compatible with the elastic response spectrum and the stochastic linearization technique, the equivalent damping ratio is obtained. It is shown that once the system is linearized r…

viscous dampers nonlinearity seismic protection toggle brace power spectral density stochastic analysisSettore ICAR/08 - Scienza Delle Costruzioni
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