Search results for "Analysis"

showing 10 items of 26772 documents

Correlational selection on pro- and anti-inflammatory effectors.

2012

9 pages; International audience; Parasites impose a permanent threat for hosts. As a consequence, immune defenses are important for host fitness. However, the immune response can also produce self-damage and impair host fitness if not properly regulated. Effectors that up- and downregulate the immune response should, therefore, evolve in concert, and be under the action of correlational selection. To address this issue, we assessed the shape of the selection operating on pro- and anti-inflammatory effectors following an inflammatory challenge in laboratory mice. We found that selection acts on the combination of these two traits as individuals that produced large amount of pro-inflammatory …

0106 biological sciencesLipopolysaccharidesMale[ SDV.IMM.IA ] Life Sciences [q-bio]/Immunology/Adaptive immunology01 natural sciencesMiceImmunopathologyDarwinian medicine[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisimmunopathologyGenetics0303 health sciencesEffectorFlow CytometryInterleukin-10Interleukin 10[SDV.IMM.IA]Life Sciences [q-bio]/Immunology/Adaptive immunologyIL-10CytokinesRegression AnalysisFemalemedicine.symptomGeneral Agricultural and Biological Sciences[ SDV.MP.PAR ] Life Sciences [q-bio]/Microbiology and Parasitology/Parasitologymedicine.drug_classInflammationBiology010603 evolutionary biologysurvivalAnti-inflammatory03 medical and health sciencesImmune systemImmunityGeneticsmedicineEscherichia coliAnimals[SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/ParasitologySelection GeneticEcology Evolution Behavior and SystematicsSelection (genetic algorithm)030304 developmental biologyIL-6[ SDE.BE ] Environmental Sciences/Biodiversity and Ecologyevolutionary immunologyInterleukin-6inflammationImmunology[SDE.BE]Environmental Sciences/Biodiversity and Ecology[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/SymbiosisEvolution; international journal of organic evolution
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Potential of nisin-incorporated sodium caseinate films to control Listeria in artificially contaminated cheese

2010

International audience; A sodium caseinate film containing nisin (1000 IU/cm(2)) was produced and used to control Listeria innocua in an artificially contaminated cheese. Mini red Babybel cheese was chosen as a model semi-soft cheese. L. innocua was both surface- and in-depth inoculated to investigate the effectiveness of the antimicrobial film as a function of the distance from the surface in contact with the film. The presence of the active film resulted in a 1.1 log CFU/g reduction in L. innocua counts in surface-inoculated cheese samples after one week of storage at 4 degrees C as compared to control samples. With regard to in-depth inoculated cheese samples, antimicrobial efficiency wa…

0106 biological sciencesListeriaColony Count MicrobialFood ContaminationMini Babybel®Shelf life01 natural sciencesMicrobiologyMatrix (chemical analysis)chemistry.chemical_compound0404 agricultural biotechnologyBacteriocinCheeseFood Preservation010608 biotechnologyHumans[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyFood scienceListeria innocuaNisinNisinbiologyCaseins04 agricultural and veterinary sciencesContaminationAntimicrobialbiology.organism_classification040401 food scienceSodium caseinatechemistryConsumer Product Safety13. Climate actionFood MicrobiologyFood PreservativesListeriaFood matrixAntimicrobial packagingFood quality[SDV.AEN]Life Sciences [q-bio]/Food and NutritionFood Science
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Eimeria-parasites are associated with a lowered mother's and offspring's body condition in island and mainland populations of the bank vole.

2006

This study, based on correlative data, tests the hypothesis that infections withEimeriaspp. parasites exert a significant loss of fitness of bank voles (Clethrionomys glareolus) reflected in lower reproductive success and survival, declining host population densities and are associated positively with population size. The study was conducted in 20 mainland and 27 island populations in central Finland during May–September in 1999. Faecal samples showed that 28% of 767 individuals were infected withEimeriaspp. The presence ofEimeriaparasites was higher in dense mainland populations than in sparsely populated islands. Eimerian infections increased during the course of the breeding season, prob…

0106 biological sciencesLitter (animal)MalePopulationZoologyBreeding010603 evolutionary biology01 natural sciencesPopulation densityEimeriaRodent Diseases03 medical and health sciencesFecesCoccidiaPregnancySeasonal breederAnimalseducationFinland030304 developmental biologyPopulation Density0303 health scienceseducation.field_of_studybiologyReproductive successGeographyArvicolinaeCoccidiosisReproductionbiology.organism_classificationSurvival AnalysisBank voleInfectious DiseasesPregnancy Complications ParasiticAnimal Science and ZoologyParasitologyEimeriaFemaleParasitology
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Geographical trends in the yolk carotenoid composition of the pied flycatcher (Ficedula hypoleuca).

2010

Carotenoids in the egg yolks of birds are considered to be important antioxidants and immune stimulants during the rapid growth of embryos. Yolk carotenoid composition is strongly affected by the carotenoid composition of the female’s diet at the time of egg formation. Spatial and temporal differences in carotenoid availability may thus be reflected in yolk concentrations. To assess whether yolk carotenoid concentrations or carotenoid profiles show any large-scale geographical trends or differences among habitats, we collected yolk samples from 16 European populations of the pied flycatcher, Ficedula hypoleuca. We found that the concentrations and proportions of lutein and some other xantho…

0106 biological sciencesLuteinRange (biology)Maternal effectsPopulation DynamicsBreedingXanthophylls01 natural sciencesAntioxidantsTreesSongbirdschemistry.chemical_compoundEgg antioxidantspolycyclic compoundsCarotenoidLepidoptera larvaechemistry.chemical_classification0303 health scienceseducation.field_of_studyPrincipal Component AnalysisbiologyGeographyEcologyfood and beveragesbeta CaroteneEgg YolkZeaxanthinEuropeembryonic structuresFemaleTree phenologyfood.ingredientFood ChainPopulation010603 evolutionary biologyInsectivorous birds03 medical and health sciencesfoodYolkAnimalseducationEcology Evolution Behavior and Systematics030304 developmental biologyorganic chemicalsLuteinFicedula15. Life on landbiology.organism_classificationCarotenoidsbiological factorsDietchemistryXanthophyllPhysiological ecology - Original PaperOecologia
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Survival cost of an early immune soliciting in nature.

2009

8 pages; International audience; If immune functions confer obvious benefits to hosts, life-history theory assumes that they also induce costs, leading to trade-offs between immunity and other fitness components. However, whether substantial fitness costs are associated with immune systems in the wild is debatable, as numerous factors may influence the costs and benefits associated with immune activation. Here, we explore the survival cost of immune deployment in postfledging birds. We injected Eurasian collared dove nestlings (Streptopelia decaocto) with antigens from Escherichia coli, and examined whether this immune challenge affected survival after fledging. To assess survival, birds we…

0106 biological sciencesMESH : Escherichia coliimmune defensesMESH : Bird Diseases[ SDV.IMM.IA ] Life Sciences [q-bio]/Immunology/Adaptive immunology01 natural sciencesMESH: Bird DiseasesPredationNesting BehaviorBody SizeMESH: AnimalsMESH: Nesting BehaviorEscherichia coli InfectionsMESH : Adaptation Physiological0303 health sciencesbiologyMESH: Escherichia coli[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]StreptopeliaFledgeMESH : Antigens BacterialMESH : Immunity InnateAdaptation Physiological[ SDV.BID.EVO ] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE][SDV.IMM.IA]Life Sciences [q-bio]/Immunology/Adaptive immunologyMESH : Escherichia coli InfectionsMESH: Survival AnalysisMESH: Immunity InnateGeneral Agricultural and Biological Sciencessurvival.Immune activationfitness costMESH : Body SizeMESH : Nesting Behavior010603 evolutionary biologysurvivalBirds03 medical and health sciencesImmune systemAntigenImmunityGeneticsEscherichia coliAnimalsColumbidaeEcology Evolution Behavior and SystematicsMESH: Escherichia coli Infections030304 developmental biologyMESH: ColumbidaeAntigens BacterialMESH: Body SizeBird Diseasesbiology.organism_classificationMESH: Adaptation PhysiologicalSurvival AnalysisImmunity Innatefree-ranging vertebrateImmunologybacteriaMESH : AnimalsMESH : Survival AnalysisMESH : ColumbidaeMESH: Antigens BacterialFitness cost
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Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

2009

46 pages, 4 tables, 6 figures, 3 additinoal files.

0106 biological sciencesMESH: Genome PlantArabidopsis thalianaGene regulatory networkArabidopsis01 natural sciencesTranscriptomeGene Expression Regulation PlantArabidopsisMESH: Gene Expression Regulation DevelopmentalCluster AnalysisGene Regulatory NetworksMESH: ArabidopsisMESH: EcosystemMESH: Models GeneticOligonucleotide Array Sequence AnalysisMESH: Gene Regulatory NetworksGenetics0303 health sciencesMESH: Stress MechanicalbiologyMESH: Genomicsfood and beveragesGene Expression Regulation DevelopmentalGenomicsPhenotypeAlgorithmsGenome PlantMESH: MutationSystems biologyGenomicsMESH: AlgorithmsComputational biologyMESH: Arabidopsis ProteinsMESH: Phenotype03 medical and health sciencesMESH: Gene Expression Profiling[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMESH: Gene Expression Regulation PlantEcosystem030304 developmental biologyModels GeneticMicroarray analysis techniquesArabidopsis ProteinsGene Expression ProfilingResearchfungiRobustness (evolution)biology.organism_classificationMESH: Cluster AnalysisGene expression profilingMutationMESH: Oligonucleotide Array Sequence AnalysisStress Mechanical010606 plant biology & botany
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The Chlamydomonas genome reveals the evolution of key animal and plant functions

2007

Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as the structure, assembly, and function of eukaryotic flagella (cilia), which were inherited from the common ancestor of plants and animals, but lost in land plants. We sequenced the ∼120-megabase nuclear genome of Chlamydomonas and performed comparative phylogenomic analyses, identifying genes encoding uncharacterized proteins that are likely associated with the function and biogenesis of chloroplasts or eukaryotic flagella. Analyses of the Chlamydomonas genome advance our understanding of the a…

0106 biological sciencesMESH: Sequence Analysis DNAMESH: Algal ProteinsChloroplastsProteomeMESH: PlantsChlamydomonas reinhardtii01 natural sciencesGenomeMESH: Membrane Transport ProteinsDNA AlgalMESH: DNA AlgalMESH: AnimalsGoniumPhotosynthesisMESH: PhylogenyMESH: PhotosynthesisPhylogenyGenetics0303 health sciencesGenomeMultidisciplinarybiologyMESH: Genomicsfood and beveragesGenomicsPlantsBiological EvolutionMESH: Genes[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biomolecules [q-bio.BM]MESH: ProteomeFlagellaMultigene FamilyMESH: Computational BiologyMESH: Chlamydomonas reinhardtiiNuclear geneMolecular Sequence Data[SDV.BC]Life Sciences [q-bio]/Cellular BiologyFlagellumMESH: FlagellaArticle03 medical and health sciencesIntraflagellar transportMESH: EvolutionAnimalsMESH: Genome[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biochemistry [q-bio.BM]Gene[SDV.BC] Life Sciences [q-bio]/Cellular Biology030304 developmental biologyMESH: Molecular Sequence DataMESH: ChloroplastsAlgal ProteinsChlamydomonasComputational BiologyMembrane Transport ProteinsSequence Analysis DNAbiology.organism_classificationGenesMESH: Multigene FamilyChlamydomonas reinhardtii010606 plant biology & botany
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Evidence for ontogenetically and morphologically distinct alternative reproductive tactics in the invasive Round Goby Neogobius melanostomus.

2017

Alternative reproductive tactics are characterized by the occurrence of discrete alternative morphs that differ in behavioural, morphological and physiological traits within the same sex. Although much effort has been made to describe the behaviour, morphology and physiology of such alternative morphs, less effort has been invested investigating how much overlap there is in the characteristics of such morphs in natural populations. We studied random population samples of the invasive Round Goby Neogobius melanostomus from five different localities in the river Rhine system in the Netherlands. We found two morphologically and physiologically distinct male morphs which likely represent altern…

0106 biological sciencesMaleAnimal sexual behaviourCheeksgenetic structuresPhysiologyMarine and Aquatic Scienceslcsh:MedicineSkin Pigmentation01 natural sciencesBehavioral EcologySexual Behavior AnimalAquaculture and FisheriesSeasonal breederMedicine and Health SciencesBody Sizelcsh:ScienceGeneralLiterature_REFERENCE(e.g.dictionariesencyclopediasglossaries)reproductive and urinary physiologyNetherlandseducation.field_of_studyPrincipal Component AnalysisMultidisciplinaryAnimal BehaviorEcologyAquacultuur en VisserijReproductionGobyFishesPE&RCFreshwater FishGonadosomatic IndexGedragsecologiemedicine.anatomical_structurePhysiological ParametersRound gobyVertebratesRegression AnalysisFemaleAnatomyGenital AnatomyResearch ArticleFreshwater EnvironmentsGonadNeogobiusImaging TechniquesPopulationZoologyBiologyAnimal Sexual BehaviorResearch and Analysis Methods010603 evolutionary biologyRiversOcular SystemmedicineLife ScienceAnimalseducationGonadsAnalysis of VarianceBehavior010604 marine biology & hydrobiologyMorphometryEcology and Environmental Sciencesfungilcsh:RReproductive SystemOrganismsBiology and Life SciencesAquatic EnvironmentsBodies of Waterbiology.organism_classificationPerciformesFaceWIASEarth SciencesEyeslcsh:QIntroduced SpeciesZoologyHeadEnvironmental SciencesPLoS ONE
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The effects of data collection and observation methods on uncertainty of social networks in wild primates

2020

International audience; In social species, network centralities of group members shape social transmission and other social phenomena. Different factors have been found to influence the measurement of social networks, such as data collection and observation methods. In this study, we collected data on adults and juveniles and examined the effect of data collection method (ad libitum sampling vs. focal animal sampling) and observation method (interaction—grooming; play—vs. association—arm‐length; 2 m; 5 m proximities—) on social networks in wild vervet monkeys. First, we showed using a bootstrapping method, that uncertainty of ad libitum grooming and play matrices were lesser than uncertaint…

0106 biological sciencesMaleComputer sciencePooling010603 evolutionary biology01 natural sciencesCorrelationStatisticsChlorocebus aethiopsAnimals0501 psychology and cognitive sciences050102 behavioral science & comparative psychologyProxy (statistics)Social BehaviorSocial network analysisEcology Evolution Behavior and SystematicsSocialityData collectionBehavior AnimalBootstrappingData Collection05 social sciencesSampling (statistics)GroomingPlay and Playthings[SDE]Environmental SciencesAnimal Science and ZoologyFemaleBehavior Observation Techniques
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Semen characteristics and their ability to predict sperm cryopreservation potential of Atlantic cod, Gadus morhua L.

2010

There is a lack of biomarkers or indices that can be used to predict the quality of fish semen samples following the freezing and thawing cycle. In the present study, a series of semen indices were tested to assess if they could accurately forecast the cryopreservation potential of Atlantic cod (Gadus morhua) semen. Fresh and frozen-thawed sperm activity variables were compared, and relationships between frozen-thawed sperm activity and fertilization success were examined. In comparison with fresh sperm, activity variables of frozen-thawed spermatozoa were reduced. Of the 18 males examined, mean (± SEM) spermatocrit of fresh sperm was 40.72 ± 4.23%, osmolality of the seminal plasma 366.32 ±…

0106 biological sciencesMaleCryobiologySemenSemen analysis01 natural sciencesCryopreservationAndrologyHuman fertilizationFood AnimalsSemenmedicineGadusAnimals14. Life underwaterSmall AnimalsCryopreservationbiologymedicine.diagnostic_testurogenital systemEquine010604 marine biology & hydrobiology04 agricultural and veterinary sciencesbiology.organism_classificationSpermSpermatozoaSemen AnalysisGadus morhuaFertilization040102 fisheries0401 agriculture forestry and fisheriesAnimal Science and ZoologyFemaleAtlantic codBiomarkersForecastingSemen PreservationTheriogenology
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