Search results for "Aqueous solution"

showing 10 items of 1610 documents

Do dynamic effects play a significant role in enzymatic catalysis? A theoretical analysis of formate dehydrogenase.

2010

A theoretical study of the protein dynamic effects on the hydride transfer between the formate anion and nicotinamide adenine dinucleotide (NAD + ), catalyzed by formate dehydrogenase (FDH), is presented in this paper. The analysis of free downhill molecular dynamic trajectories, performed in the enzyme and compared with the reaction in aqueous solution, has allowed the study of the dynamic coupling between the reacting fragments and the protein or the solvent water molecules, as well as an estimation of the dynamic effect contribution to the catalytic effect from calculation of the transmission coefficient in the enzyme and in solution. The obtained transmission coefficients for the enzyme…

StereochemistryFDHNicotinamide adenine dinucleotideFormate dehydrogenaseenzyme catalysisChemical reactionrare-event trajectoriesCatalysisEnzyme catalysischemistry.chemical_compoundMolecular dynamicsReaction rate constantGrote–Hynes theoryComputational chemistryFormatedynamic effectsNuclear Magnetic Resonance BiomolecularAqueous solutionMolecular StructureOrganic ChemistryGeneral ChemistryModels TheoreticalNADFormate Dehydrogenasesmolecular dynamicsKineticschemistryAlgorithmsChemistry (Weinheim an der Bergstrasse, Germany)
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S-shaped decanuclear heterometallic [Ni8Ln2] complexes [Ln(iii) = Gd, Tb, Dy and Ho]: theoretical modeling of the magnetic properties of the gadolini…

2014

The reaction of 8-quinolinol-2-carboaldoxime (LH2) with Ni(II) and Ln(III) salts afforded the heterometallic decanuclear compounds [Ni8Dy2(μ3-OH)2(L)8(LH)2(H2O)6](ClO4)2·16H2O (1), [Ni8Gd2(μ3-OH)2(L)8(LH)2(H2O)4(MeOH)2](NO3)2·12H2O (2), [Ni8Ho2(μ3-OH)2(L)8(LH)2(H2O)4(MeOH)2](ClO4)2·2MeOH·12H2O (3) and [Ni8Tb2 (μ3-OH)2(L)8(LH)2(MeOH)4(OMe)2]·2CH2Cl2·8H2O (4). While compounds 1-3 are dicationic, compound 4 is neutral. These compounds possess an S-shaped architecture and comprise a long chain of metal ions bound to each other. In all the complexes, the eight Ni(II) and two Ln(III) ions of the multimetallic ensemble are hold together by two μ3-OH, eight dianionic (L(2-)) and two monoanionic oxi…

StereochemistryGadoliniumMetal ions in aqueous solutionchemistry.chemical_elementOximeIonInorganic Chemistrychemistry.chemical_compoundMolecular wireCrystallographychemistryFerromagnetismAntiferromagnetismDerivative (chemistry)Dalton Trans.
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Influence of the presence of divalent first-row transition metal ions on the structure of sodium(i) salts of 1,2,3,4-benzenetetracarboxylic acid (H4b…

2006

Three different sodium(I)-containing salts of 1,2,4,5-benzenetetracarboxylic (H4bta) of formula [Na4(bta)(H2O)12] (1), [Na2M(H2bta)2(H2O)8]·2H2O] [M = Mn (2) and Ni (3)] were synthesized and their structures were solved by single crystal X-ray diffraction methods. Compound 1 crystallises in orthorhombic system, space group Pc21b with a = 6.9997(4) A, b = 16.4260(9) A, c = 20.3312(18) A, V = 476.30(15) A3 and Z = 4. Compounds 2 and 3 crystallize in the monoclinic system, space group C2/m with a = 7.3778(4) A, b = 20.1493(6) A, c = 10.4963(4) A, β = 103.466(8)°, V = 1517.5(11) A3 and Z = 2 for 1 and a = 7.2862(4) A, b = 20.1165(7) A, c = 10.4032(3) A, β = 103.366(9)°, V = 1483.52(11) A3 and Z…

StereochemistryLigandChemistryHydrogen bondMetal ions in aqueous solutionGeneral ChemistryCondensed Matter Physicslaw.inventionCrystallographylawMoleculeGeneral Materials ScienceOrthorhombic crystal systemCrystallizationIsostructuralMonoclinic crystal systemCrystEngComm
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Triplet of cysteines – Coordinational riddle?

2020

Polythiol binding of metal ions plays crucial role in the proper functioning of cysteine-rich proteins that are responsible for metal homeostasis and defending processes against metal toxicity (including heavy metals detoxification). The coordination properties of cysteine residues involved in specific sequencional patterns in proteins (like those present in e.g. metallothioneins) are interesting not only from a chemical point of view but may also lead to a better understanding of the purpose and allocation of metal ions in various biomolecules. In this study, the interaction of Zn2+, Cd2+ and Ni2+ ions with four peptides containing cysteine triplet motif were studied by potentiometric and …

StereochemistryMetal ions in aqueous solutionMetal toxicity010402 general chemistry01 natural sciencesBiochemistryInorganic ChemistryMetalResidue (chemistry)chemistry.chemical_compoundCoordination ComplexesNickelAmideHumansCysteinechemistry.chemical_classification010405 organic chemistryBiomoleculePeptide Fragments0104 chemical sciencesZincchemistryvisual_artThiolvisual_art.visual_art_mediumMetallothioneinCadmiumCysteineJournal of Inorganic Biochemistry
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Unusual binding ability of α,β-dehydrodipeptides towards metal ions

1994

Abstract Ni II , Zn II and Co II complexes of α,β-dehydro-dipeptides (containing Gly, Leu, Ala, Val or Phe residues) were studied by potentiometric and spectroscopic methods. Deprotonation and coordination of amide nitrogens occurred in all cases around the physiological pH range. The dipeptides with composition of Xaa-Δ-Ala formed octahedral species, while Gly-Δ-Xaa (Xaa = Leu or Phe) formed square planar bis complexes with Ni II .

StereochemistryMetal ions in aqueous solutionPotentiometric titrationbody regionsInorganic Chemistrychemistry.chemical_compoundBinding abilityDeprotonationTermészettudományokchemistryOctahedronAmideMaterials ChemistryPh rangePhysical and Theoretical ChemistryKémiai tudományokPolyhedron
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A novel polynitrile ligand with different coordination modes: Synthesis, structure and magnetic properties of the series [M(tcnoprOH)2(H2O)2] (M=Mn, …

2008

International audience; A novel polynitrile ligand (tcnoprOH− = [(NC)2CC(OCH2CH2CH2OH)C(CN)2]−) with up to five potentially coordinating groups has been synthesized in a one-pot reaction from a cyclic acetal and malononitrile. The combination of this novel ligand with different transition metal ions has led to the synthesis of two different structural types with the same formula but with different coordination modes in the ligand. Mn(II) and Cu(II) lead to a μ2-N,O-coordinating mode in the series of compounds formulated as [M(N,O-tcnoprOH)2(H2O)2] (M = MnII (1) and CuII (2)), whereas Co(II) and, most probably Ni(II), lead to a μ2-N,N′-coordinating mode in [Co(N,N′-tcnoprOH)2(H2O)2] (3). Bot…

StereochemistryMetal ions in aqueous solutionZero field splitting[CHIM.INOR]Chemical Sciences/Inorganic chemistry010402 general chemistry01 natural sciencesAnalytical ChemistryInorganic ChemistryPolynitrile ligandschemistry.chemical_compoundParamagnetismGroup (periodic table)Magnetic properties[CHIM]Chemical Sciences[CHIM.COOR]Chemical Sciences/Coordination chemistrySpectroscopyMalononitrile010405 organic chemistryLigandOrganic ChemistryAcetalMagnetic chains3. Good health0104 chemical sciencesCrystallographychemistryChain complexesDerivative (chemistry)
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Binuclear Cu2+ complex mediated discrimination between L-glutamate and L-aspartate in water.

2005

L-Glutamate and L-aspartate selectivity is achieved by the action of two Cu2+ metal ions rightly disposed in a cyclophanetype macrocyclic framework; electrochemical sensing of glutamate has been achieved by adsorption of the copper complexes on graphite electrodes. Verdejo Viu, Begoña, Begona.Verdejo@uv.es ; Domenech Carbo, Antonio, Antonio.Domenech@uv.es ; Jimenez Garcia, Hermas Rafael, Hermas.Jimenez@uv.es ; Soriano Soto, Concepción, Concepcion.Soriano@uv.es ; Garcia-España Monsonis, Enrique, Enrique.Garcia-Es@uv.es

StereochemistryUNESCO::QUÍMICAMetal ions in aqueous solutionL-Aspartatechemistry.chemical_elementGlutamic AcidElectrochemistry:QUÍMICA [UNESCO]Medicinal chemistryCatalysisAdsorptionMaterials ChemistryElectrochemistryOrganometallic CompoundsAspartic AcidUNESCO::QUÍMICA::Química inorgánicaElectrochemicalMetals and AlloysGlutamate receptorWaterBinuclear Cu2General ChemistryCyclophanetype macrocyclic framework:QUÍMICA::Química inorgánica [UNESCO]CopperSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialschemistryL glutamateL-aspartateBinuclear Cu2 ; L-glutamate ; L-aspartate ; Water ; Cyclophanetype macrocyclic framework ; ElectrochemicalCeramics and CompositesL-glutamateSelectivityCopperChemical communications (Cambridge, England)
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Fluoroquinolone–metal complexes: A route to counteract bacterial resistance?

2014

Abstract Microbial resistance to antibiotics is one of the biggest public health threats of the modern world. Antibiotic resistance is an area of much clinical relevance and therefore research that has the potential to identify agents that may circumvent it or treat resistant infections is paramount. Solution behavior of various fluoroquinolone (FQ) complexes with copper(II) in the presence and absence of 1,10-phenanthroline (phen) was studied in aqueous solution, by potentiometry and/or spectrophotometry, and are herein described. The results obtained showed that under physiological conditions (micromolar concentration range and pH 7.4) only copper(II):FQ:phen ternary complexes are stable.…

Stereochemistrychemistry.chemical_elementInfrared spectroscopyMicrobial Sensitivity TestsCrystallography X-RayBiochemistryInorganic ChemistryMetalMinimum inhibitory concentrationCoordination ComplexesSpectrophotometryDrug Resistance BacterialEscherichia colimedicineMoleculeAqueous solutionmedicine.diagnostic_testChemistryCombinatorial chemistryCoppervisual_artvisual_art.visual_art_mediumTernary operationCopperFluoroquinolonesPhenanthrolinesJournal of Inorganic Biochemistry
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Binding abilities of dehydropeptides towards Cu(II) and Ni(II) ions. Impact of Z–E isomerization on metal ion binding

2002

The study on the binding ability of dehydro-tri- and tetrapeptides has shown that the alpha,beta-double bond has a critical effect on the peptide coordination to metal ions. It may affect the binding of the vicinal amide nitrogens by the electronic effect and stabilize the complex due to steric effects. The (Z) isomer is the most effective in stabilizing of the complexes formed. The presence of large side chain in the dehydroamino acid residue may also be critical for the coordination mode in the metallopeptide systems.

Steric effectsNickel(II) complexesE–Z isomersMetal ion bindingChemistryMetal ions in aqueous solutionPhotochemistryBiochemistryisomerizationInorganic ChemistryMetalCrystallographychemistry.chemical_compounddehydropeptidesAmidevisual_artSide chainvisual_art.visual_art_mediumElectronic effectCopper(II) complexesIsomerizationVicinalJournal of Inorganic Biochemistry : an interdisciplinary journal
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Synthesis, crystal and molecular-electronic structure, and kinetic investigation of two new sterically hindered isomeric forms of the dimethyl[methyl…

2017

Two new structural isomers – 2,4-dimethyl-5-[methyl(phenylsulfonyl)amino]benzenesulfonyl chloride (1) and 2,4-dimethyl-3-[methyl(phenylsulfonyl)amino]benzenesulfonyl chloride (2) were synthesized by interaction of N-(2,4-dimethylphenyl)-N-methyl-benzenesulfonamide or N-(2,6-dimethylphenyl)-N-methylbenzenesulfonamide with chlorosulfonic acid. Both compounds have been structurally characterized by X-ray single crystal diffraction at 100 K. The crystals of 1 are triclinic: space group View the MathML source, a = 8.1542(2), b = 11.0728(3), c = 11.2680(3) Å, α = 116.557(3), β = 95.155(2), γ = 108.258(2)°, V = 831.97(4) Å3, Z = 2, R = 0.0251 for 2429 reflections; the crystals of 2 are monoclinic:…

Steric effectsSubstitution reaction010405 organic chemistryStereochemistryHydrogen bondOrganic ChemistryTriclinic crystal system010402 general chemistry01 natural sciencesKinetics of substitution reactions in aqueous solution0104 chemical sciencesAnalytical ChemistryInorganic ChemistryCrystallographychemistry.chemical_compoundQuantum-chemical analysischemistryX-ray crystal structure determinationIntramolecular forceBenzenesulfonyl chlorideStructural isomerMoleculeOrtho-effectSterically hindered derivatives of aromatic sulfonic acidsSpectroscopyJournal of Molecular Structure
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