Search results for "BAYESIAN"
showing 10 items of 604 documents
An autoregressive approach to spatio-temporal disease mapping
2007
Disease mapping has been a very active research field during recent years. Nevertheless, time trends in risks have been ignored in most of these studies, yet they can provide information with a very high epidemiological value. Lately, several spatio-temporal models have been proposed, either based on a parametric description of time trends, on independent risk estimates for every period, or on the definition of the joint covariance matrix for all the periods as a Kronecker product of matrices. The following paper offers an autoregressive approach to spatio-temporal disease mapping by fusing ideas from autoregressive time series in order to link information in time and by spatial modelling t…
Prospective analysis of infectious disease surveillance data using syndromic information.
2014
In this paper, we describe a Bayesian hierarchical Poisson model for the prospective analysis of data for infectious diseases. The proposed model consists of two components. The first component describes the behavior of disease during nonepidemic periods and the second component represents the increase in disease counts due to the presence of an epidemic. A novelty of our model formulation is that the parameters describing the spread of epidemics are allowed to vary in both space and time. We also show how syndromic information can be incorporated into the model to provide a better description of the data and more accurate one-step-ahead forecasts. These real-time forecasts can be used to …
On 1-Laplacian Elliptic Equations Modeling Magnetic Resonance Image Rician Denoising
2015
Modeling magnitude Magnetic Resonance Images (MRI) rician denoising in a Bayesian or generalized Tikhonov framework using Total Variation (TV) leads naturally to the consideration of nonlinear elliptic equations. These involve the so called $1$-Laplacian operator and special care is needed to properly formulate the problem. The rician statistics of the data are introduced through a singular equation with a reaction term defined in terms of modified first order Bessel functions. An existence theory is provided here together with other qualitative properties of the solutions. Remarkably, each positive global minimum of the associated functional is one of such solutions. Moreover, we directly …
Bayesian survival analysis with BUGS
2020
Survival analysis is one of the most important fields of statistics in medicine and biological sciences. In addition, the computational advances in the last decades have favored the use of Bayesian methods in this context, providing a flexible and powerful alternative to the traditional frequentist approach. The objective of this article is to summarize some of the most popular Bayesian survival models, such as accelerated failure time, proportional hazards, mixture cure, competing risks, multi-state, frailty, and joint models of longitudinal and survival data. Moreover, an implementation of each presented model is provided using a BUGS syntax that can be run with JAGS from the R programmin…
A computationally fast alternative to cross-validation in penalized Gaussian graphical models
2015
We study the problem of selection of regularization parameter in penalized Gaussian graphical models. When the goal is to obtain the model with good predicting power, cross validation is the gold standard. We present a new estimator of Kullback-Leibler loss in Gaussian Graphical model which provides a computationally fast alternative to cross-validation. The estimator is obtained by approximating leave-one-out-cross validation. Our approach is demonstrated on simulated data sets for various types of graphs. The proposed formula exhibits superior performance, especially in the typical small sample size scenario, compared to other available alternatives to cross validation, such as Akaike's i…
Bayesian models for data missing not at random in health examination surveys
2018
In epidemiological surveys, data missing not at random (MNAR) due to survey nonresponse may potentially lead to a bias in the risk factor estimates. We propose an approach based on Bayesian data augmentation and survival modelling to reduce the nonresponse bias. The approach requires additional information based on follow-up data. We present a case study of smoking prevalence using FINRISK data collected between 1972 and 2007 with a follow-up to the end of 2012 and compare it to other commonly applied missing at random (MAR) imputation approaches. A simulation experiment is carried out to study the validity of the approaches. Our approach appears to reduce the nonresponse bias substantially…
Methods and Tools for Bayesian Variable Selection and Model Averaging in Normal Linear Regression
2018
In this paper, we briefly review the main methodological aspects concerned with the application of the Bayesian approach to model choice and model averaging in the context of variable selection in regression models. This includes prior elicitation, summaries of the posterior distribution and computational strategies. We then examine and compare various publicly available R-packages, summarizing and explaining the differences between packages and giving recommendations for applied users. We find that all packages reviewed (can) lead to very similar results, but there are potentially important differences in flexibility and efficiency of the packages.
Extending conventional priors for testing general hypotheses in linear models
2007
We consider that observations come from a general normal linear model and that it is desirable to test a simplifying null hypothesis about the parameters. We approach this problem from an objective Bayesian, model-selection perspective. Crucial ingredients for this approach are 'proper objective priors' to be used for deriving the Bayes factors. Jeffreys-Zellner-Siow priors have good properties for testing null hypotheses defined by specific values of the parameters in full-rank linear models. We extend these priors to deal with general hypotheses in general linear models, not necessarily of full rank. The resulting priors, which we call 'conventional priors', are expressed as a generalizat…
Explaining German outward FDI in the EU: a reassessment using Bayesian model averaging and GLM estimators
2021
The last decades have seen an increasing interest in FDI and the process of production fragmentation. This has been particularly important for Germany as the core of the European Union (EU) production hub. This paper attempts to provide a deeper under standing of the drivers of German outward FDI in the EU for the period 1996–2012 by tackling the two main challenges faced in the modelization of FDI, namely the variable selection problem and the choice of the estimation method. For that purpose, we first extend previous BMA analysis developed by Camarero et al. (Econ Model 83:326–345, 2019) by including country-pair-fixed effects to select the appropriate set of variables. Second, we compare…
Efficient spatial designs using Hausdorff distances and Bayesian optimization
2021
An iterative Bayesian optimisation technique is presented to find spatial designs of data that carry much information. We use the decision theoretic notion of value of information as the design criterion. Gaussian process surrogate models enable fast calculations of expected improvement for a large number of designs, while the full-scale value of information evaluations are only done for the most promising designs. The Hausdorff distance is used to model the similarity between designs in the surrogate Gaussian process covariance representation, and this allows the suggested algorithm to learn across different designs. We study properties of the Bayesian optimisation design algorithm in a sy…