Search results for "Bacteriophage"

showing 10 items of 177 documents

Production of methylated mercury, lead, and cadmium by marine bacteria as a significant natural source for atmospheric heavy metals in polar regions

1999

Abstract Mixed and pure bacterial cultures of polar origin were incubated in model experiments under polar conditions. The releasing rates of monomethyl and dimethyl mercury (MeHg+ and Me2Hg), trimethyl lead (Me3Pb+), and monomethyl cadmium (MeCd+) were determined in dependence on the incubation time. This is the first time that methylation of cadmium by bacteria could be shown. The formation of tetramethyl and dimethyl lead (Me4Pb and Me2Pb2+) was also checked but no release of these methylated compounds was observed. The determination of methylated mercury compounds was carried out by using a purge and trap system after derivatisation of monomethyl mercury into the volatile methylethyl me…

CadmiumEnvironmental EngineeringbiologyChemistryHealth Toxicology and MutagenesisPublic Health Environmental and Occupational Healthchemistry.chemical_elementGeneral MedicineGeneral ChemistryBacterial growthbiology.organism_classificationPollutionMercury (element)MetalMarine bacteriophagevisual_artEnvironmental chemistryvisual_art.visual_art_mediumEnvironmental ChemistrySeawaterGas chromatographyBacteriaChemosphere
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A new assay for O6-alkylguanine-DNA-alkyltransferase to determine DNA repair capacities using lambda-phage DNA as substrate.

1990

One O6-methylguanine (O6-meG) was introduced into each BamHI site of lambda-phage DNA as a substrate for the determination of the DNA repair protein O6-alkylguanine-DNA-alkyltransferase. A new assay using as the detection group 32P-labeled phosphate introduced at the 3' position of the modified nucleoside by incorporation of 32P-labeled TTP in the 3'-neighboring position proved highly sensitive: 10(-16) mol of the DNA lesion was still easily detectable. This DNA, which has greater than 1000 bp represents a good model for cellular DNA and was used as a substrate to measure the individual repair capacities for O6-meG in human lymphocytes of 20 healthy male and female donors. There were great …

Cancer ResearchGuanineDNA RepairDNA repairMolecular Sequence DataBiologySubstrate Specificitychemistry.chemical_compoundO(6)-Methylguanine-DNA MethyltransferaseDNA Repair ProteinEscherichia coliHumansLymphocyteschemistry.chemical_classificationBase SequenceSubstrate (chemistry)General MedicineMethyltransferasesLambda phagebiology.organism_classificationBacteriophage lambdaIn vitroKineticsEnzymeBiochemistrychemistryDNA ViralBamHIDNACarcinogenesis
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Subcellular localization of bacteriophage PRD1 proteins in Escherichia coli

2014

Bacteria possess an intricate internal organization resembling that of the eukaryotes. The complexity is especially prominent at the bacterial cell poles, which are also known to be the preferable sites for some bacteriophages to infect. Bacteriophage PRD1 is a well-known model serving as an ideal system to study structures and functions of icosahedral internal membrane-containing viruses. Our aim was to analyze the localization and interactions of individual PRD1 proteins in its native host Escherichia coli. This was accomplished by constructing a vector library for production of fluorescent fusion proteins. Analysis of solubility and multimericity of the fusion proteins, as well as their …

Cancer ResearchViral proteinvirusesIntracellular SpaceBiologymedicine.disease_causeBacterial cell structureProtein–protein interactionViral Proteins03 medical and health sciencesVirologyEscherichia colimedicineBacteriophage PRD1Escherichia coli030304 developmental biology0303 health sciencesBacteria030302 biochemistry & molecular biologyDNA replicationta1182Protein interactionsFusion proteinVirus assemblyCell biologyConfocal microscopyProtein TransportInfectious DiseasesMembrane proteinVirion assemblyMembrane virusVirus Research
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ICTV Virus Taxonomy Profile: Cystoviridae

2017

The family Cystoviridae includes enveloped viruses with a tri-segmented dsRNA genome and a double-layered protein capsid. The innermost protein shell is a polymerase complex responsible for genome packaging, replication and transcription. Cystoviruses infect Gram-negative bacteria, primarily plant-pathogenic Pseudomonas syringae strains. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the Cystoviridae, which is available at http://www.ictv.global/report/cystoviridae.

Cystoviridae0301 basic medicinebacteriophagesGenes Viralviruksetviruses030106 microbiologyGenome ViralVirus ReplicationGenomebakteriofagitICTVtaxonomy03 medical and health sciencesViral envelopeVirologyGram-Negative BacteriaPseudomonas syringaevirusesPseudomonas phage phi6PolymeraseVirus classificationbiologyta1183Bacteriophage phi 6VirologyICTV Virus Taxonomy Profiles3. Good health030104 developmental biologyCapsidViral replicationbiology.proteinPhageRNA ViralCapsid ProteinsJournal of General Virology
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Something old, something new : exploring membrane-containing bacteriophages

2016

Cystoviridaesaperonitrakenneviruksetvirus assemblymembrane-containing virusbakteriofagitfluoresenssimikroskopiassDNA phagevirologiaperimäkalvotchaperonin complexproteiinitbacteriophage PRD1fluorescent fusion proteinkapsidi
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New enveloped dsRNA phage from freshwater habitat.

2015

Cystoviridae is a family of bacteriophages with a tri-segmented dsRNA genome enclosed in a tri-layered virion structure. Here, we present a new putative member of the Cystoviridae family, bacteriophage ϕNN. ϕNN was isolated from a Finnish lake in contrast to the previously identified cystoviruses, which originate from various legume samples collected in the USA. The nucleotide sequence of the virus reveals a strong genetic similarity (~80 % for the L-segments, ~55 % for the M-segments and ~84 % for the S-segments) to Pseudomonas phage ϕ6, the type member of the virus family. However, the relationship between ϕNN and other cystoviruses is more distant. In general, proteins located in the int…

CystoviridaevirusesMolecular Sequence DataFresh Waterfreshwater habitatsGenomeVirusBacteriophage03 medical and health sciencesVirologyPseudomonasSequence Homology Nucleic AcidCluster AnalysisBacteriophagesFinlandPhylogeny030304 developmental biologyGenetics0303 health sciencesbiology030306 microbiologyta1183ta1182Bacteriophage phi 6Nucleic acid sequenceSequence Analysis DNAbiology.organism_classificationVirologyRNA silencingLakesMolecular virologyRNA ViralRecombinationThe Journal of general virology
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Vibrio ponticus sp. nov., a neighbour of V fluvialis-V. furnissii clade, isolated from gilthead sea bream, mussels and seawater.

2004

A new Vibrio species, Vibrio ponticus, is proposed to accommodate four marine bacteria isolated from sea water, mussels and diseased sea bream (Sparus aurata), at the Mediterranean coast of Spain. Strains are Gram negative, slightly halophilic bacteria that require Na+ ion for growth, oxidase and catalase positive, negative for arginine dihydrolase and ornithine decarboxylase but positive for lysine decarboxylase and indole, and utilize beta-hydroxybutyrate as a sole carbon source. Phylogenetic analysis locate these marine bacteria in the vicinity of the V. fluvialis-V. furnissii clade, sharing with these two species 16S rDNA sequence similarities slightly above 97% (97.1 and 97.3%, respect…

DNA BacterialIndolesCarboxy-LyasesHydrolasesMolecular Sequence DataBiologyOrnithine DecarboxylaseApplied Microbiology and BiotechnologyMicrobiologyDNA RibosomalMicrobiologyMarine bacteriophageVibrionaceaeVibrio InfectionsRNA Ribosomal 16SSequence Homology Nucleic AcidMediterranean SeaAnimalsSeawaterRibosomal DNAEcology Evolution Behavior and SystematicsPhylogenyVibrioLysine decarboxylase3-Hydroxybutyric AcidFatty AcidsNucleic Acid HybridizationSequence Analysis DNA16S ribosomal RNAbiology.organism_classificationCatalaseVibrioSea BreamBivalviaSpainVibrio InfectionsPhenazinesGentian VioletOxidoreductasesBacteriaSystematic and applied microbiology
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Diversity and distribution of marine heterotrophic bacteria from a large culture collection

2020

16 pages, 5 figures, 3 tables, supplementary information https://doi.org/10.1186/s12866-020-01884-7

DNA BacterialMicrobiology (medical)Deep oceanMesopelagic zonelcsh:QR1-502Bacterial isolates; Deep ocean; Photic ocean; DiversityDNA RibosomalMicrobiologyDeep sealcsh:MicrobiologyBathyal zone03 medical and health sciencesMarine bacteriophageRNA Ribosomal 16SGammaproteobacteriaMediterranean SeaPhotic zone14. Life underwaterAtlantic OceanIndian OceanPhotic oceanPhylogeny030304 developmental biology0303 health sciencesDiversityPacific OceanBacteriabiologyArctic Regions030306 microbiologyEcologyAlphaproteobacteriaHeterotrophic ProcessesSequence Analysis DNAbiology.organism_classificationPhylogeography13. Climate actionAphotic zoneBacterial isolatesWater MicrobiologyResearch Article
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rDNA fingerprinting as a tool in epidemiological analysis of Salmonella typhi infections

1991

SUMMARYCharacterization of 169 strainsof Salmonella typhiof phage types C1, C4, D1and D9isolated in 1975–88 was carried out by rDNA gene restriction pattern analysis. Twenty-four isolates had been recovered during four large waterbone outbreaks in the last 20 years in Sicily; 145 strains, isolated from apparently sporadic cases of infection in Southern Italy in the same period of time, were also examined.Application of rRNA–DNA hybridization technique after digestion of chromosomal DNA withClaI showed the identity of patterns of the epidemic strains of phage types C1and D1, confirming attribution of the outbreaks to single bacterial clones. Patterns of the two available strains of lysotype …

DNA BacterialSerotypeSalmonellaEpidemiologyRestriction MappingSalmonella typhimedicine.disease_causeDNA RibosomalDisease OutbreaksMicrobiologyBacteriophagemedicineCluster AnalysisHumansTyphoid FeverBacteriophage TypingPhage typingbiologyNucleic Acid HybridizationOutbreakSalmonella typhiRibosomal RNAbiology.organism_classificationDNA FingerprintingInfectious DiseasesItalyDNA profilingResearch Article
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The biological activity of bacteriophage DNA, prepared by the cationic detergent dilution technique

1975

Abstract The preparation of phage lambda DNA infecting E. coli K 12 with cationic detergent is described. This DNA infects E. coli spheroblasts with the same efficiency as DNA prepared by phenol methods.

DetergentsViral Plaque AssayBiologyVirus Replicationmedicine.disease_causeColiphagesBacteriophagechemistry.chemical_compoundEscherichia coliGeneticsmedicinePhenolEscherichia coliVirus quantificationDNA VirusesBiological activityLambda phageChromatography Ion Exchangebiology.organism_classificationMolecular biologyQuaternary Ammonium CompoundschemistryBiochemistryViral replicationDNA ViralDNANucleic Acids Research
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