Search results for "Bayesian model"
showing 10 items of 44 documents
A hierarchical Bayesian Beta regression approach to study the effects of geographical genetic structure and spatial autocorrelation on species distri…
2019
Global climate change (GCC) may be causing distribution range shifts in many organisms worldwide. Multiple efforts are currently focused on the development of models to better predict distribution range shifts due to GCC. We addressed this issue by including intraspecific genetic structure and spatial autocorrelation (SAC) of data in distribution range models. Both factors reflect the joint effect of ecoevolutionary processes on the geographical heterogeneity of populations. We used a collection of 301 georeferenced accessions of the annual plant Arabidopsis thaliana in its Iberian Peninsula range, where the species shows strong geographical genetic structure. We developed spatial and nonsp…
Accounting for preferential sampling in species distribution models
2019
D. C., A. L. Q. and F. M. would like to thank the Ministerio de Educación y Ciencia (Spain) for financial support (jointly financed by the European Regional Development Fund) via Research Grants MTM2013‐42323‐P and MTM2016‐77501‐P, and ACOMP/2015/202 from Generalitat Valenciana (Spain). Species distribution models (SDMs) are now being widely used in ecology for management and conservation purposes across terrestrial, freshwater, and marine realms. The increasing interest in SDMs has drawn the attention of ecologists to spatial models and, in particular, to geostatistical models, which are used to associate observations of species occurrence or abundance with environmental covariates in a fi…
Integrating spatial management measures into fisheries: The Lepidorhombus spp. case study
2020
Most fisheries management systems rely on a set of regulatory measures to achieve desired objectives. Controls on catch and effort are usually supplemented with gear restrictions, minimum landing sizes, and in the framework of the new common fisheries policy, limitation of discards and by-catch. However, the increasing use of spatial management measures such as conservation areas or spatial and temporal area closures faces new challenges for fishery managers. Here we present an integrated spatial framework to identify areas in which undersized commercial species are more abundant. Once these areas are identified they could be avoided by fishers, minimizing the fishing impact over the immatu…
Discard ban: A simulation-based approach combining hierarchical Bayesian and food web spatial models
2020
12 pages, 6 figures, 6 tables, 2 appendixes, supplementary data https://doi.org/10.1016/j.marpol.2019.103703
Small-scale shrimp fisheries bycatch: a multi-criteria approach for data-poor situations
2020
Abstract Bycatch and discards from small-scale fisheries (SSF) are usually ignored when compared with industrial fisheries, not only by policy-makers, but also by scientists. Therefore, SSF social, economic and ecological impacts are poorly known and especially in the context of incidental catches, regardless of whether they become bycatch or discards. Such neglect is worrisome due to the role that SSF play in food security and poverty alleviation, particularly in coastal and rural communities in developing countries. In this study, a combination of sampling data and the fishers' behavior (specifically the basis of their decision on where to fish) were used. Bayesian models were applied to …
Predicting marine species distributions: complementarity of food-web and Bayesian hierarchical modelling approaches
2019
16 pages, 9 figures, 3 tables, 1 appendix
Habitat modeling for cetacean management: Spatial distribution in the southern Pelagos Sanctuary (Mediterranean Sea)
2017
International audience; Effective management and conservation of wild populations requires knowledge of their habitats, especially by mean of quantitative analyses of their spatial distributions. The Pelagos Sanctuary is a dedicated marine protected area for Mediterranean marine mammals covering an area of 90,000km2 in the north-western Mediterranean Sea between Italy, France and the Principate of Monaco. In the south of the Sanctuary, i.e. along the Sardinian coast, a range of diverse human activities (cities, industry, fishery, tourism) exerts several current ad potential threats to cetacean populations. In addition, marine mammals are recognized by the EU Marine Strategy Framework Direct…
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations
2016
Various approaches to calling single-nucleotide variants (SNVs) or insertion-or-deletion (indel) mutations have been developed based on next-generation sequencing (NGS). However, most of them are dedicated to a particular type of mutation, e.g. germline SNVs in normal cells, somatic SNVs in cancer/tumor cells, or indels only. In the literature, efficient and integrated callers for both germline and somatic SNVs/indels have not yet been extensively investigated. We present SNVSniffer, an efficient and integrated caller identifying both germline and somatic SNVs/indels from NGS data. In this algorithm, we propose the use of Bayesian probabilistic models to identify SNVs and investigate a mult…
Stones, Bones, and Hillfort: Radiocarbon Dating of Ķivutkalns Bronze-Working Center
2013
The Bronze Age site of ķivutkalns with its massive amount of archaeological artifacts and human remains is considered the largest bronze-working center in Latvia. The site is a unique combination of cemetery and hillfort believed to be built on top of each other. This work presents new radiocarbon dates on human and animal bone collagen that somewhat challenge this interpretation. Based on analyses using a Bayesian modeling framework, the present data suggest overlapping calendar year distributions for the contexts within the 1st millennium BC. The carbon and nitrogen isotopic ratios indicate mainly terrestrial dietary habits of studied individuals and nuclear family remains buried in one o…
Temporal Binding in Multisensory and Motor-Sensory Contexts: Toward a Unified Model
2021
Our senses receive a manifold of sensory signals at any given moment in our daily lives. For a coherent and unified representation of information and precise motor control, our brain needs to temporally bind the signals emanating from a common causal event and segregate others. Traditionally, different mechanisms were proposed for the temporal binding phenomenon in multisensory and motor-sensory contexts. This paper reviews the literature on the temporal binding phenomenon in both multisensory and motor-sensory contexts and suggests future research directions for advancing the field. Moreover, by critically evaluating the recent literature, this paper suggests that common computational prin…