Search results for "Biochem"

showing 10 items of 20937 documents

Boolean computation in plants using post-translational genetic control and a visual output signal

2018

[EN] Due to autotrophic growing capacity and extremely rich secondary metabolism, plants should be preferred targets of synthetic biology. However, developments in plants usually run below those in other taxonomic groups. In this work we engineered genetic circuits capable of logic YES, OR and AND Boolean computation in plant tissues with a visual output signal. The circuits, which are deployed by means of Agrobacterium tumefaciens, perform with the conditional activity of the MYB transcription factor Roseal from Antirrhinum majus inducing the accumulation of anthocyanins, plant endogenous pigments that are directly visible to the naked eye or accurately quantifiable by spectrophotometric a…

0106 biological sciences0301 basic medicineProteasesmedicine.medical_treatmentRecombinant Fusion ProteinsPotyvirusBiomedical EngineeringAgrobacterium01 natural sciencesBiochemistry Genetics and Molecular Biology (miscellaneous)Anthocyanins03 medical and health sciencesViral ProteinsAntirrhinum majusAnthocyanins Biological computingmedicineAntirrhinumMYBSecondary metabolismTranscription factorSynthetic biologyPlant ProteinsProteasebiologyfungiPotyvirusfood and beveragesGeneral MedicineAgrobacterium tumefaciensbiology.organism_classificationPlants Genetically ModifiedCell biologyGENETICA030104 developmental biologySpectrophotometryGenetic circuitsPotyvirus proteaseSynthetic BiologyProtein Processing Post-Translational010606 plant biology & botanyPeptide HydrolasesPlasmidsTranscription Factors
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Molecular signatures of silencing suppression degeneracy from a complex RNA virus

2021

As genomic architectures become more complex, they begin to accumulate degenerate and redundant elements. However, analyses of the molecular mechanisms underlying these genetic architecture features remain scarce, especially in compact but sufficiently complex genomes. In the present study, we followed a proteomic approach together with a computational network analysis to reveal molecular signatures of protein function degeneracy from a plant virus (as virus-host protein-protein interactions). We employed affinity purification coupled to mass spectrometry to detect several host factors interacting with two proteins of Citrus tristeza virus (p20 and p25) that are known to function as RNA sil…

0106 biological sciences0301 basic medicineProteomicsCitrusInteraction NetworksPathogenesisPlant Sciencemedicine.disease_causePathology and Laboratory Medicine01 natural sciencesInteractomeBiochemistryBimolecular fluorescence complementationRNA interferenceRNA silencing supressorsCitrus tristeza virusMedicine and Health SciencesDegeneracy (biology)Protein Interaction MapsBiology (General)H20 Plant diseasesPlant ProteinsEcologybiologyPlant virusesEukaryotaArgonautePlantsSmall interfering RNANucleic acidsRNA silencingComputational Theory and MathematicsGenetic interferenceExperimental Organism SystemsModeling and SimulationProteomeArgonaute ProteinsHost-Pathogen InteractionsRNA ViralEpigeneticsResearch ArticleClosterovirusRNA virusViral proteinQH301-705.5Arabidopsis ThalianaPlant PathogensComputational biologyGenome ViralBrassicaResearch and Analysis MethodsModels BiologicalPlant Viral Pathogens03 medical and health sciencesCellular and Molecular NeuroscienceViral ProteinsModel OrganismsPlant and Algal ModelsTobaccomedicineGeneticsGenomesNon-coding RNAProtein InteractionsMolecular signaturesMolecular BiologyEcology Evolution Behavior and SystematicsPlant DiseasesHost Microbial InteractionsBiology and life sciencesMass spectrometryOrganismsComputational BiologyProteinsRNA virusPlant Pathologybiology.organism_classificationGene regulationRepressor Proteins030104 developmental biologyU30 Research methodsAnimal StudiesRNAGene expression010606 plant biology & botanyF30 Plant genetics and breeding
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Characterization and purification of a bacterial chlorogenic acid esterase detected during the extraction of chlorogenic acid from arbuscular mycorrh…

2016

International audience; A Gram-negative bacterium able to grow using chlorogenic acid (5-caffeoylquinic acid) as sole carbon source has been isolated from the roots of tomato plants inoculated with the arbuscular mycorrhizal fungus Rhizophagus irregularis. An intracellular esterase exhibiting very high affinity (K-m = 2 mu M) for chlorogenic acid has been extracted and purified by FPLC from the chlorogenate-grown cultures of this bacterium. The molecular mass of the purified esterase determined by SDS-PAGE was 61 kDa and its isoelectric point determined by chromatofocusing was 7.75. The esterase hydrolysed chlorogenic acid analogues (caffeoylshikimate, and the 4- and 3-caffeoylquinic acid i…

0106 biological sciences0301 basic medicineRhizophagus irregularisCoumaric AcidsPhysiologyRoot-associated bacteria[SDV]Life Sciences [q-bio]Arbuscular mycorrhizal fungiPlant ScienceBiologyCoumaric acidRoot exudates01 natural sciencesEsterasePlant RootsProtocatechuic acidSubstrate SpecificityFerulic acid03 medical and health scienceschemistry.chemical_compoundHydrolysisChlorogenic acidBacterial ProteinsSolanum lycopersicumMycorrhizaeGeneticsMethyl caffeate[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyBacteriaEthanolMethanolChlorogenic acidbiology.organism_classification6. Clean waterChlorogenase030104 developmental biologychemistryBiochemistry[SDE]Environmental SciencesCarboxylic Ester Hydrolases010606 plant biology & botany
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Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both suga…

2016

SPE IPM INRA UB CT1; International audience; Arbuscular mycorrhizal (AM) fungi are associated with about 80% of land plants. AM fungi provide inorganic nutrients to plants and in return up to 20% of the plant-fixed CO2 is transferred to the fungal symbionts. Since AM fungi are obligate biotrophs, unraveling how sugars are provided to the fungus partner is a key for understanding the functioning of the symbiosis. In this study, we identified two new monosaccharide transporters from Rhizophagus irregularis (RiMST5 and RiMST6) that we characterized as functional high affinity monosaccharide transporters. RiMST6 was characterized as a glucose specific, high affinity H(+) co-transporter. We prov…

0106 biological sciences0301 basic medicineRhizophagus irregularisLightPhysiology[SDV]Life Sciences [q-bio]Plant Sciencearbuscular mycorrhizal fungus01 natural sciencesrhizophagus irregularisGlomeromycotaSoilGene Expression Regulation PlantMycorrhizaeMedicagoPhylogeny2. Zero hungerMutualism (biology)Fungal proteinReverse Transcriptase Polymerase Chain Reactionglucose specificMonosaccharidesfood and beverageshigh affinity H+ co-transporterhigh affinity transporterArbuscular mycorrhizaBiochemistry[SDE]Environmental SciencesFungusSaccharomyces cerevisiaeBiologyFungal Proteins03 medical and health sciencesSymbiosisStress PhysiologicalBotanyGenetics[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyRNA MessengerGlomeromycotaObligateCell MembraneGenetic Complementation TestfungiMST5MST6Membrane Transport Proteins15. Life on landmonosaccharide transporterbiology.organism_classification030104 developmental biologyGlucose010606 plant biology & botany
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Arbuscular mycorrhizal symbiosis mitigates the negative effects of salinity on durum wheat

2017

Arbuscular mycorrhizal (AM) symbiosis is generally considered to be effective in ameliorating the plant tolerance to salt stress. Unfortunately, the comprehension of the mechanisms implicated in salinity stress alleviation by AM symbiosis is far from being complete. Thus, an experiment was performed by growing durum wheat (Triticum durum Desf.) plants under salt-stress conditions to evaluate the influence of AM symbiosis on both the plant growth and the regulation of a number of genes related to salt stress and nutrient uptake. Durum wheat plants were grown outdoors in pots in absence or in presence of salt stress and with or without AM fungi inoculation. The inoculum consisted of a mixture…

0106 biological sciences0301 basic medicineRhizophagus irregularisSalinityLeavesGene Expressionlcsh:MedicinePlant SciencePlant RootsPolymerase Chain ReactionPhysical Chemistry01 natural sciencesNutrientMycorrhizaePlant Resistance to Abiotic Stresslcsh:ScienceTriticumBiomass (ecology)MultidisciplinaryEcologyPlant Anatomyfood and beveragesSalt TolerancePlantsSettore AGR/02 - Agronomia E Coltivazioni ErbaceeChemistryPlant PhysiologyPhysical SciencesWheatSymbiosiResearch ArticleBiology03 medical and health sciencesSymbiosisSettore AGR/07 - Genetica AgrariaPlant-Environment InteractionsBotanyGeneticsPlant DefensesGene RegulationGrassesSymbiosisBiochemistry Genetics and Molecular Biology (all)InoculationGene Expression ProfilingPlant EcologyEcology and Environmental Scienceslcsh:RfungiOrganismsFungiBiology and Life SciencesPlant RootPlant Pathologybiology.organism_classificationSporeSalinitySpecies Interactions030104 developmental biologyAgricultural and Biological Sciences (all)Chemical PropertiesArbuscular mycorrhizal symbiosislcsh:QSalt-Tolerance010606 plant biology & botanyPLOS ONE
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Borrelia afzeliialters reproductive success in a rodent host

2018

The impact of a pathogen on the fitness and behaviour of its natural host depends upon the host–parasite relationship in a given set of environmental conditions. Here, we experimentally investigated the effects ofBorrelia afzelii,one of the aetiological agents of Lyme disease in humans, on the fitness of its natural rodent host, the bank vole (Myodes glareolus), in semi-natural conditions with two contrasting host population densities. Our results show thatB. afzeliican modify the reproductive success and spacing behaviour of its rodent host, whereas host survival was not affected. Infection impaired the breeding probability of large bank voles. Reproduction was hastened in infected females…

0106 biological sciences0301 basic medicineRodentmetsämyyräOffspringHost–pathogen interactionZoologyzoonoosithost-pathogen interactionBorrelia afzeliimedicine.disease_cause010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesbiology.animalMyodes glareolusisäntäeläimetnatural hostmedicineMatingGeneral Environmental ScienceEcologyGeneral Immunology and MicrobiologybiologyReproductive successHost (biology)General Medicinezoonosislisääntyminenbiology.organism_classificationfitnessBorrelia-bakteeritBank vole030104 developmental biologyBorrelia afzeliita1181host–pathogen interactionGeneral Agricultural and Biological SciencesProceedings of the Royal Society B: Biological Sciences
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Prebiotic effect of xylooligosaccharides produced from birchwood xylan by a novel fungal GH11 xylanase.

2017

34 p.-4 fig.-1 tab.

0106 biological sciences0301 basic medicineSCFAsBreast-fedStaphylococcus hominisMicroorganismmedicine.medical_treatmentOligosaccharidesXyloseBiologyXylosidase01 natural sciencesAnalytical Chemistry03 medical and health scienceschemistry.chemical_compound010608 biotechnologyXylobiosemedicineGlycoside hydrolaseEndo-14-beta XylanasesPrebioticHydrolysisGeneral MedicineXylanLactic acid030104 developmental biologyPrebioticschemistryBiochemistryTalaromycesXOSXylanaseXylansMicrobiomeBifidobacteriumFood ScienceFood chemistry
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Production of rosmarinic acid and salvianolic acid B from callus culture of Salvia miltiorrhiza with cytotoxicity towards acute lymphoblastic leukemi…

2016

Salvia miltiorrhiza (SM) Bunge is one of the widely-used Chinese medicinal herbs. In this study, the chemical constituents and anticancer potential of SM stems and leaves were examined with those of respective callus cultures. The callus culture for stem and leaf explants was initiated in modified Murashige and Skoog (MS) medium. Active constituents of respective extracts were analyzed by high performance liquid chromatography coupled with DAD and MS (HPLC-DAD-MS). Rosmarinic acid (RA) and salvianolic acid B (Sal B) were determined to be the main phenolic compounds. Quantitative analyses revealed that callus stem extracts produced higher amount of RA and Sal B (stem RA: 1.27±0.38%; stem Sal…

0106 biological sciences0301 basic medicineSalvia miltiorrhizaBiology01 natural sciencesHigh-performance liquid chromatographySalvia miltiorrhizaDepsidesAnalytical Chemistry03 medical and health scienceschemistry.chemical_compoundCytotoxicityIC50Chromatography High Pressure LiquidBenzofuransTraditional medicinePlant ExtractsRosmarinic acidfungifood and beveragesGeneral MedicinePrecursor Cell Lymphoblastic Leukemia-LymphomaIn vitroPlant Leaves030104 developmental biologyBiochemistrychemistryCinnamatesCallus010606 plant biology & botanyFood ScienceExplant cultureDrugs Chinese HerbalFood chemistry
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Oxidative stress and senescence in social insects: A significant but inconsistent link?

2021

The life-prolonging effects of antioxidants have long entered popular culture, but the scientific community still debates whether free radicals and the resulting oxidative stress negatively affect longevity. Social insects are intriguing models for analysing the relationship between oxidative stress and senescence because life histories differ vastly between long-lived reproductives and the genetically similar but short-lived workers. Here, we present the results of an experiment on the accumulation of oxidative damage to proteins, and a comparative analysis of the expression of 20 selected genes commonly involved in managing oxidative damage, across four species of social insects: a termit…

0106 biological sciences0301 basic medicineSenescenceAgingmedia_common.quotation_subjectLongevityZoologyIsopteraBiologySocial insectsAffect (psychology)Protein oxidationmedicine.disease_cause010603 evolutionary biology01 natural sciencesAntioxidantsGeneral Biochemistry Genetics and Molecular BiologyTranscriptomes03 medical and health sciencesSpecies SpecificitymedicineAnimalsResearch ArticlesSocialitymedia_commonAntsLongevityArticlesBeesANTOxidative StressAgeing030104 developmental biologyAgeingAntioxidant genesGeneral Agricultural and Biological SciencesProtein oxidationOxidative stress
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RNA uridylation and decay in plants

2018

RNA uridylation consists of the untemplated addition of uridines at the 3′ extremity of an RNA molecule. RNA uridylation is catalysed by terminal uridylyltransferases (TUTases), which form a subgroup of the terminal nucleotidyltransferase family, to which poly(A) polymerases also belong. The key role of RNA uridylation is to regulate RNA degradation in a variety of eukaryotes, including fission yeast, plants and animals. In plants, RNA uridylation has been mostly studied in two model species, the green algae Chlamydomonas reinhardtii and the flowering plant Arabidopsis thaliana . Plant TUTases target a variety of RNA substrates, differing in size and function. These RNA substrates include …

0106 biological sciences0301 basic medicineSmall interfering RNATerminal nucleotidyltransferaseRNA StabilitymRNAArabidopsisChlamydomonas reinhardtiiUridylationBiology01 natural sciencesRNA decayGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesRNA degradationSettore AGR/07 - Genetica AgrariamicroRNAGene silencing[SDV.BV]Life Sciences [q-bio]/Vegetal Biology[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyUridineComputingMilieux_MISCELLANEOUSPolymerase2. Zero hungerMessenger RNABiochemistry Genetics and Molecular Biology (all)fungiRNAfood and beverages[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyArticlesPlantsRibosomal RNAbiology.organism_classificationCell biology030104 developmental biologyAgricultural and Biological Sciences (all)biology.proteinRNARNA InterferenceGeneral Agricultural and Biological SciencesChlamydomonas reinhardtii010606 plant biology & botany
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