Search results for "Biological Tissue"

showing 10 items of 57 documents

Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project

2021

ABSTRACTDiffusion-weighted magnetic resonance imaging (dMRI) measurements and models provide information about brain connectivity and are sensitive to the physical properties of tissue microstructure. Diffusional Kurtosis Imaging (DKI) quantifies the degree of non-Gaussian diffusion in biological tissue from dMRI. These estimates are of interest because they were shown to be more sensitive to microstructural alterations in health and diseases than measures based on the total anisotropy of diffusion which are highly confounded by tissue dispersion and fiber crossings. In this work, we implemented DKI in the Diffusion in Python (DIPY) project - a large collaborative open-source project which …

Computer scienceopen-source softwaremicrostructureNeurosciences. Biological psychiatry. NeuropsychiatryGrey matter030218 nuclear medicine & medical imagingWhite matterdiffusion MRI03 medical and health sciencesBehavioral Neuroscience0302 clinical medicinebiophysicsmedicineTechnology and CodeReference implementationDiffusion (business)DKIBiological Psychiatrycomputer.programming_languageGround truthmedicine.diagnostic_testMagnetic resonance imagingHuman NeuroscienceBiological tissueInvariant (physics)Python (programming language)Characterization (materials science)pythonDiffusion imagingPsychiatry and Mental healthmedicine.anatomical_structureNeuropsychology and Physiological PsychologyNeurologyDTIKurtosisAlgorithmcomputer030217 neurology & neurosurgeryRC321-571MRITractographyDiffusion MRIFrontiers in Human Neuroscience
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An advanced numerical treatment of EM absorption in human tissue

2020

The numerical computation of local electromagnetic absorption at points within the human tissue is proposed by avoiding the mesh generation in the problem domain. Recently, meshless numerical methods have been introduced as an alter- native computational approach to mesh based methods. This is an important feature to generate competitive procedure able to provide final evaluations for large data amounts in real time. In this paper the smoothed particle hydrodynamics method is considered to compute the electromagnetic absorption. First experiments are performed in two dimension at single frequencies by considering incident TM plane wave on 2D cylinder simulating a simplified model of human t…

Electromagnetic absorption SPH Biological tissuesComputer scienceComputationNumerical analysisPlane wave02 engineering and technology01 natural sciences010101 applied mathematicsSmoothed-particle hydrodynamicsSettore MAT/08 - Analisi NumericaSettore ING-IND/31 - ElettrotecnicaMesh generationFeature (computer vision)0202 electrical engineering electronic engineering information engineeringCylinder020201 artificial intelligence & image processing0101 mathematicsAbsorption (electromagnetic radiation)Algorithm2020 IEEE 20th Mediterranean Electrotechnical Conference ( MELECON)
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3D-Ultrastructure, Functions and Stress Responses of Gastropod (Biomphalaria glabrata) Rhogocytes

2014

Rhogocytes are pore cells scattered among the connective tissue of different body parts of gastropods and other molluscs, with great variation in their number, shape and size. They are enveloped by a lamina of extracellular matrix. Their most characteristic feature is the "slit apparatus", local invaginations of the plasma membrane bridged by cytoplasmic bars, forming slits of ca. 20 nm width. A slit diaphragm creates a molecular sieve with permeation holes of 20×20 nm. In blue-blooded gastropods, rhogocytes synthesize and secrete the respiratory protein hemocyanin, and it has been proposed-though not proven-that in the rare red-blooded snail species they might synthesize and secrete the he…

Electron Microscope TomographyRespiratory SystemCell PoresProtein SynthesisBiochemistryNucleic AcidsTissue DistributionHemoproteinsSecretory PathwayMultidisciplinaryBiomphalariabiologyQRImmunogold labellingAnatomyEndoplasmic ReticulaEndocytosisBody FluidsExtracellular MatrixCell biologyRespiratory proteinProtein TransportConnective TissueCell ProcessesSlit diaphragmMedicineAnatomyCellular Structures and OrganellesCellular TypesResearch ArticleCadmiumProtein StructureHistologyScienceMolecular Sequence DataBiosynthesisProtein ChemistryExocytosisNephrinImaging Three-DimensionalStress PhysiologicalAnimalsBiomphalaria glabrataAmino Acid SequenceEvolutionary BiologyCell MembraneBiology and Life SciencesProteinsMembrane ProteinsGlobulinsCell Biologybiology.organism_classificationCytoskeletal ProteinsBiological TissueMembrane proteinCytoplasmUltrastructurebiology.proteinExtracellular SpaceRibosomesZoologyPLoS ONE
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Original strain energy density functions for modeling of anisotropic soft biological tissue

2017

This thesis has focused on the construction of strain energy densities for describing the non-linear behavior of anisotropic materials such as biological soft tissues (ligaments, tendons, arterial walls, etc.) or fiber-reinforced rubbers. The densities we have proposed have been developed with the mathematical theory of invariant polynomials, particularly the Noether theorem and the Reynolds operator. Our work involved two types of anisotropic materials, the first with a single fiber family and the second with a four-fiber family. The concept of polyconvexity has also been studied because it is well known that it plays an important role for ensuring the existence of solutions. In the case o…

Finite element methodsHypérelasticité anisotropeModélisation[SPI.MECA.BIOM] Engineering Sciences [physics]/Mechanics [physics.med-ph]/Biomechanics [physics.med-ph]Méthodes éléments finisBiomécaniqueModelingSoft biological tissue[SPI.MECA.BIOM]Engineering Sciences [physics]/Mechanics [physics.med-ph]/Biomechanics [physics.med-ph]BiomechanicalAnisotropic hyperelasticityTissus biologiques
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Distributed and Lumped Parameter Models for the Characterization of High Throughput Bioreactors

2016

Next generation bioreactors are being developed to generate multiple human cell-based tissue analogs within the same fluidic system, to better recapitulate the complexity and interconnection of human physiology. The effective development of these devices requires a solid understanding of their interconnected fluidics, to predict the transport of nutrients and waste through the constructs and improve the design accordingly. In this work, we focus on a specific model of bioreactor, with multiple input/outputs, aimed at gen- erating osteochondral constructs, i.e., a biphasic construct in which one side is cartilagi- nous in nature, while the other is osseous. We next develop a general computat…

Genetics and Molecular Biology (all)0301 basic medicineComputer scienceDistributed computinglcsh:Medicine02 engineering and technologyMedicine (all); Biochemistry Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)BiochemistryOxygenPLLA bioreactor computational modelMedicine and Health SciencesFluid dynamicslcsh:ScienceThroughput (business)Flow RateMultidisciplinaryPhysicsSimulation and ModelingMedicine (all)Classical MechanicsVolumetric flow rateChemistryConnective TissuePhysical SciencesAnatomyResearch ArticleChemical ElementsCell Physiology0206 medical engineeringMicrofluidicschemistry.chemical_elementFluid MechanicsResearch and Analysis MethodsContinuum Mechanics03 medical and health sciencesBioreactorFluidicsFluid Flowlcsh:RBiology and Life SciencesBiological TransportFluid DynamicsCell BiologyConstruct (python library)020601 biomedical engineeringCell MetabolismOxygenMetabolismBiological TissueCartilage030104 developmental biologyAgricultural and Biological Sciences (all)chemistryFlow (mathematics)lcsh:QPorous mediumPLOS ONE
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α-parvin is required for epidermal morphogenesis, hair follicle development and basal keratinocyte polarity

2020

Epidermal morphogenesis and hair follicle (HF) development depend on the ability of keratinocytes to adhere to the basement membrane (BM) and migrate along the extracellular matrix. Integrins are cell-matrix receptors that control keratinocyte adhesion and migration, and are recognized as major regulators of epidermal homeostasis. How integrins regulate the behavior of keratinocytes during epidermal morphogenesis remains insufficiently understood. Here, we show that alpha-parvin (alpha-pv), a focal adhesion protein that couples integrins to actin cytoskeleton, is indispensable for epidermal morphogenesis and HF development. Inactivation of the murine alpha-pv gene in basal keratinocytes res…

KeratinocytesIntegrinsEpitheliumBasement MembraneExtracellular matrixMiceAnimal CellsCell MovementMedicine and Health SciencesMorphogenesisCells CulturedSkinMultidisciplinarybiologyintegumentary systemChemistryQMicrofilament ProteinsMorfogènesiRCell DifferentiationDermisCell biologyExtracellular Matrixmedicine.anatomical_structureMedicineCellular TypesAnatomyCellular Structures and OrganellesIntegumentary SystemKeratinocyteHair FollicleResearch ArticleCèl·lulesCellsScienceIntegrinMorphogenesisMice TransgenicActin cytoskeleton organizationFocal adhesionHair FolliclesmedicineCell AdhesionAnimalsFocal AdhesionsBiology and Life SciencesEpithelial CellsCell BiologyActin cytoskeletonActinsBiological Tissuebiology.proteinEpidermisEpidermal thickeningDevelopmental BiologyHairPLoS ONE
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Significant liver fibrosis assessed using liver transient elastography is independently associated with low bone mineral density in patients with non…

2017

Background Metabolic bone disorders frequently occur in patients with chronic liver disease; however, the association between liver fibrosis and bone mineral density in patients with non-alcoholic fatty liver disease (NAFLD) is unclear. Methods This is a cross-sectional analysis of 231 asymptomatic subjects (160 women, 61.6 years old) from a university hospital setting, between February 2012 and December 2014. Bone mineral density (BMD) was measured at the lumbar spine, femur neck, and total hip using dual-energy X-ray absorptiometry (DXA). Liver fibrosis and steatosis were assessed using transient elastography. Results Among a total of 231 individuals, 129 subjects (55.8%) had NAFLD. BMDs …

Liver CirrhosisMalePathologySteatosisBone densityOsteoporosislcsh:MedicineChronic liver diseasePathology and Laboratory MedicineGastroenterologyBiochemistryCytopathology0302 clinical medicineFibrosisBone DensityNon-alcoholic Fatty Liver DiseaseMedicine and Health SciencesFemurlcsh:ScienceMusculoskeletal SystemBone mineralMultidisciplinaryLumbar VertebraeLiver DiseasesFatty liverMiddle AgedLipidsCholesterolConnective TissueLiver FibrosisElasticity Imaging Techniques030211 gastroenterology & hepatologyFemaleAnatomyResearch Articlemusculoskeletal diseasesmedicine.medical_specialty030209 endocrinology & metabolismGastroenterology and HepatologyPelvis03 medical and health sciencesInternal medicinemedicineHumansBoneSkeletonAgedHipbusiness.industrylcsh:RBiology and Life Sciencesmedicine.diseaseFibrosisOsteopeniaFatty LiverBone Diseases MetabolicBiological TissueAnatomical Pathologylcsh:QbusinessTransient elastographyDevelopmental BiologyPLoS ONE
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3-Deazaneplanocin A (DZNep), an Inhibitor of the Histone Methyltransferase EZH2, Induces Apoptosis and Reduces Cell Migration in Chondrosarcoma Cells

2014

Objective Growing evidences indicate that the histone methyltransferase EZH2 (enhancer of zeste homolog 2) may be an appropriate therapeutic target in some tumors. Indeed, a high expression of EZH2 is correlated with poor prognosis and metastasis in many cancers. In addition, 3-Deazaneplanocin A (DZNep), an S-adenosyl-L homocysteine hydrolase inhibitor which induces EZH2 protein depletion, leads to cell death in several cancers and tumors. The aim of this study was to determine whether an epigenetic therapy targeting EZH2 with DZNep may be also efficient to treat chondrosarcomas. Methods EZH2 expression was determined by immunohistochemistry and western-blot. Chondrosarcoma cell line CH2879…

MESH: Cell DeathAdenosine[SDV]Life Sciences [q-bio]Cancer Treatmentlcsh:MedicineMESH: Flow CytometryApoptosischemistry.chemical_compoundSpectrum Analysis Techniques0302 clinical medicineCell MovementMolecular Cell BiologyMedicine and Health Sciences3-Deazaneplanocin AMESH: Epigenesis GeneticEnzyme Inhibitorslcsh:Science0303 health sciencesMultidisciplinaryCell DeathbiologyReverse Transcriptase Polymerase Chain ReactionEZH2Polycomb Repressive Complex 2DrugsCell migrationMESH: ChondrosarcomaFlow Cytometry3. Good healthHistone[SDV.MHEP.RSOA]Life Sciences [q-bio]/Human health and pathology/Rhumatology and musculoskeletal systemOncologyConnective TissueCell ProcessesSpectrophotometry030220 oncology & carcinogenesisHistone methyltransferaseHistone MethyltransferasesMESH: 3-deazaneplanocinCytophotometryAnatomyMESH: Polycomb Repressive Complex 2Epigenetic therapyMESH: Histone methyltransferaseResearch ArticleProgrammed cell deathHistologyChondrosarcoma[SDV.CAN]Life Sciences [q-bio]/Cancer[SDV.BC]Life Sciences [q-bio]/Cellular Biologymacromolecular substancesResearch and Analysis MethodsCell GrowthEpigenetic Therapy03 medical and health sciencesRheumatologyCell Line TumorMESH: Blotting WesternHumans[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyEZH2Tumors030304 developmental biologyMESH: Apoptosislcsh:RMESH: Histone-Lysine N-MethyltransferaseBiology and Life SciencesMESH: ImmunohistochemistryHistone-Lysine N-MethyltransferaseCell BiologyBiological TissueCartilageHistone methyltransferasechemistryApoptosisbiology.proteinCancer researchMESH: EZH2 protein humanlcsh:QCytometry
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Elevated levels of 2-arachidonoylglycerol promote atherogenesis in ApoE-/- mice.

2018

Background The endocannabinoid (eCB) 2-arachidonoylglycerol (2-AG) is a known modulator of inflammation and ligand to both, pro-inflammatory cannabinoid receptor 1 (CB1) and anti-inflammatory CB2. While the role of both receptors in atherogenesis has been studied extensively, the significance of 2-AG for atherogenesis is less well characterized. Methods The impact of 2-AG on atherogenesis was studied in two treatment groups of ApoE-/- mice. One group received the monoacylglycerol lipase (MAGL)-inhibitor JZL184 [5 mg/kg i.p.], which impairs 2-AG degradation and thus causes elevated 2-AG levels, the other group received vehicle for four weeks. Simultaneously, both groups were fed a high-chole…

Male0301 basic medicineCCR1Chemokinelcsh:MedicineSmooth Muscle Cells030204 cardiovascular system & hematologyPathology and Laboratory MedicineBiochemistryMonocytesWhite Blood CellsMicechemistry.chemical_compoundChemokine receptorSpectrum Analysis Techniques0302 clinical medicinePiperidinesAnimal CellsCell MovementMedicine and Health SciencesReceptorlcsh:ScienceImmune ResponseJZL184MultidisciplinarybiologyNeurochemistryFlow CytometryLipidsCholesterolSpectrophotometryCytophotometryCellular TypesNeurochemicalsAnatomymedicine.symptomResearch Articlemedicine.medical_specialtyImmune CellsImmunologyMuscle TissueAntigens Differentiation MyelomonocyticInflammationArachidonic AcidsResearch and Analysis MethodsDiet High-FatCell LineGlycerides03 medical and health sciencesSigns and SymptomsApolipoproteins EDiagnostic MedicineAntigens CDInternal medicinemedicineAnimalsOil Red OBenzodioxolesInflammationMuscle CellsBlood CellsMacrophageslcsh:RBiology and Life SciencesCell BiologyAtherosclerosisMonoacylglycerol lipaseBiological Tissue030104 developmental biologyEndocrinologychemistrybiology.proteinlcsh:QEndocannabinoidsNeurosciencePLoS ONE
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Compromised Neurotrophic and Angiogenic Regenerative Capability during Tendon Healing in a Rat Model of Type-II Diabetes

2017

Metabolic diseases such as diabetes mellitus type-II (DM-II) may increase the risk of suffering painful connective tissue disorders and tendon ruptures. The pathomechanisms, however, by which diabetes adversely affects connective tissue matrix metabolism and regeneration, still need better definition. Our aim was to study the effect of DM-II on expressional changes of neuro- and angiotrophic mediators and receptors in intact and healing Achilles tendon. The right Achilles tendon was transected in 5 male DM-II Goto-Kakizaki (GK) and 4 age-matched Wistar control rats. The left Achilles tendons were left intact. At week 2 post-injury, NGF, BDNF, TSP, and receptors TrkA, TrkB and Nk1 gene expre…

Male0301 basic medicinePhysiologyGene Expressionlcsh:MedicineSubstance PCardiovascular PhysiologyTendonsEndocrinology0302 clinical medicineNerve Growth FactorMedicine and Health SciencesHomeostasisMedicinelcsh:ScienceMammalsAchilles tendonMultidisciplinarybiologyAnimal ModelsAnatomyReceptors Neurokinin-1musculoskeletal systemTendonmedicine.anatomical_structureExperimental Organism SystemsConnective TissueVertebratesAnatomyResearch ArticleNeurotrophinmedicine.medical_specialtyWistar RatsEndocrine DisordersNeovascularization PhysiologicConnective tissueResearch and Analysis MethodsRodentsAchilles Tendon03 medical and health sciencesModel OrganismsTendon InjuriesInternal medicineTissue RepairDiabetes MellitusGeneticsAnimalsReceptor trkBRats WistarReceptor trkABrain-derived neurotrophic factorWound Healingbusiness.industryBrain-Derived Neurotrophic Factorlcsh:RScleraxisOrganismsBiology and Life SciencesRatsTenomodulinDisease Models AnimalBiological Tissue030104 developmental biologyNerve growth factorEndocrinologyDiabetes Mellitus Type 2Metabolic DisordersAmniotesbiology.proteinlcsh:QAngiogenesisPhysiological Processesbusiness030217 neurology & neurosurgeryDevelopmental BiologyPLOS ONE
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