Search results for "Biomolecule"
showing 10 items of 666 documents
Static and dynamic scaling behavior of a polymer melt model with triple-well bending potential
2018
We perform molecular-dynamics simulations for polymer melts of the coarse-grained polyvinyl alcohol model that crystallizes upon slow cooling. To establish the properties of its high temperature liquid state as a reference point, we characterize in detail the structural features of equilibrated polymer melts with chain lengths $5\le N \le 1000$ at a temperature slightly above their crystallization temperature. We find that the conformations of sufficiently long polymers with $N >50$ obey essentially the Flory's ideality hypothesis. The chain length dependence of the end-to-end distance and the gyration radius follow the scaling predictions of ideal chains and the probability distributions o…
Kinetic Monte Carlo Simulations of Flow-Assisted Polymerization
2012
We performed kinetic Monte Carlo simulations on a model of a polymerization process in the presence of a periodic oscillatory flow to explore the role of mixing in polymerization reactors. Application of an oscillatory flow field helps overcome the diffusive limitations that develop during a polymerization process due to an increase in the molecular weights of polymer chains, thereby giving rise to high rates of polymerization. A systematic increase in the flow strength results in a "dynamic" coil-stretch transition, leading to an elongation of polymer chains. Reactive ends of stretched (polymer) chains react more frequently than the reactive ends of coiled chains, which are screened by oth…
Conformational Properties of End-Grafted Bottlebrush Polymers
2020
Scaling analysis combined with free-energy calculations and molecular dynamics simulations of a coarse-grained bead-spring model have been used to study the structural properties of planar brushes ...
Monte Carlo simulation studies of the interfaces between polymeric and other solids as models for fiber-matrix interactions in advanced composite mat…
1996
As a coarse-grained model for dense amorphous polymer systems interacting with solid walls (i.e., the fiber surface in a composite), the bond fluctuation model of flexible polymer chains confined between two repulsive surfaces is studied by extensive Monte Carlo simulations. Choosing a potential for the length of an effective bond that favors rather long bonds, the full temperature region from ordinary polymer melts down to the glass transition is accessible. It is shown that in the supercooled state near the glass transition an “interphase” forms near the walls, where the structure of the melt is influenced by the surface. This “interphase” already shows up in static properties, but also h…
Interaction Between Polymer Brush-Coated Spherical Nanoparticles: Effect of Solvent Quality
2012
The interaction between two spherical polymer brushes in solvents of variable quality is studied by molecular dynamics simulation and by self-consistent field theory, varying both the radius of the spherical particles and their distance, as well as the grafting density and the chain length of the end-grafted flexible polymer chains. Both the potential of mean force between the particles as a function of their distance is computed, for various choices of the parameters mentioned above, and the structural characteristics are discussed (density profiles, average end-to-end distance of grafted chains, etc.) It is found that for rather short chain lengths and not too large grafting densities, is…
Coordination Geometry Preference Regulates the Structure and Dynamics of Metallo-Supramolecular Polymer Networks
2021
Metal–ligand interactions are extensively used for the development of biomimetic polymers. Macroscopic properties of such systems are closely tied to the microscopic structure and dynamics of not o...
Structure of Polymers
2014
The structure and thermodynamics of polymers are discussed both with an adapted version of Flory’s regular solution theory and the concept of scaling and random walks. The salient properties of polymers like segregation and elasticity are discussed in terms of these concept. The Flory-Stockmayer theory of gelation is introduced and related to the percolation concept.
Polymer absorption in dense polymer brushes vs. polymer adsorption on the brush-solvent interface
2014
Molecular-dynamics simulations of a coarse-grained model of a dense brush of flexible polymers (of type A) interacting with a long flexible macromolecule (of type B) are presented, considering the case of an attractive AB interaction, while effective interactions between AA and BB pairs of monomers are repulsive. Varying the strength of the attraction between unlike monomers, an adsorption transition at some critical value is found, where the B-chain is bound to the brush-solvent interface, similar to the adsorption on a planar solid substrate. However, when is much higher than , the long macromolecule is gradually “sucked in” the brush, developing many pieces that are locally stretched in …
3D Conformations of Thick Synthetic Polymer Chains Observed by Cryogenic Electron Microscopy.
2019
The backbone conformations of individual, unperturbed synthetic macromolecules have so far not been observed directly in spite of their fundamental importance to polymer physics. Here we report the dilute solution conformations of two types of linear dendronized polymers, obtained by cryogenic transmission electron stereography and tomography. The three-dimensional trajectories show that the wormlike chain model fails to adequately describe the scaling of these thick macromolecules already beyond a few nanometers in chain length, in spite of large apparent persistence lengths and long before a signature of self-avoidance appears. This insight is essential for understanding the limitations o…
Polymer-specific effects of bulk relaxation and stringlike correlated motion in the dynamics of a supercooled polymer melt
2003
We analyze dynamical heterogeneities in a simulated “bead-spring” model of a nonentangled, supercooled polymer melt. We explore the importance of chain connectivity on the spatially heterogeneous motion of the monomers. We find that when monomers move, they tend to follow each other in one-dimensional paths, forming strings as previously reported in atomic liquids and colloidal suspensions. The mean string length is largest at a time close to the peak time of the mean cluster size of mobile monomers. This maximum string length increases, roughly in an exponential fashion, on cooling toward the critical temperature TMCT of the mode-coupling theory, but generally remains small, although large…