Search results for "Biomolecule"
showing 10 items of 666 documents
Frictional drag between polymer bearing surfaces
2002
Some fundamental features of friction between two polymer bearing surfaces in relative sliding motion are investigated by molecular dynamics simulations. End-tethered and adsorbed polymers are considered under good and poor solvent conditions. The shear stress is measured while varying the solvent's viscosity, surface separation, degree of polymerization and grafting density. For all systems we observe shear thinning that is attributed to the orientation of the chains along the shear direction. This effect is particularly strong for brushes, for which the shear stress during the steady sliding state is mainly determined by the degree of overlap between the brushes.
Pressure-Induced Formation of Diblock Copolymer "Micelles" in Supercritical Fluids. A Combined Study by Small Angle Scattering Experiments and Mean-F…
2004
We developed a simple mean-field theory to describe polymer and AB diblock copolymer phase separation in supercritical (SC) fluids. The highly compressible SC fluid has been described by using a phenomenological hole theory, properly extended to consider the solvent/polymer/vacancy pseudoternary mixture. The model has been applied to describe the phase behavior of AB-diblock copolymers under the assumption of a strong solvent selectivity for just one copolymer chain. In our model the solvent selectivity is a strong function of the external pressure because in compressible fluids vacancies reduce the number of favorable solvent-polymer contacts. The combined effect of the pressure on the ave…
Molecular modeling studies of interactions between sodium polyacrylate polymer and calcite surface
2013
Abstract The interactions between calcite pigment and sodium polyacrylate dispersing agent, widely used in papermaking as paper coating components, were investigated using classical force field and quantum chemical approaches. The objective was to understand interactions between the calcite surface and sodium polyacrylate polymer at 300 K using molecular dynamics simulations. A quantum mechanical ab initio Hartree–Fock method was also used to obtain detailed information about the sodium polyacrylate polymer structure. The effect of water molecules (moisture) on the interactions was also examined. Calculations showed that molecular weight, branching and the orientation of sodium polyacrylate…
Structure of bottle-brush polymers in solution: A Monte Carlo test of models for the scattering function
2008
Extensive Monte Carlo results are presented for a lattice model of a bottle-brush polymer under good solvent or Theta solvent conditions. Varying the side chain length, backbone length, and the grafting density for a rigid straight backbone, both radial density profiles of monomers and side chain ends are obtained, as well as structure factors describing the scattering from a single side chain and from the total bottle-brush polymer. To describe the structure in the interior of a very long bottle-brush, a periodic boundary condition in the direction along the backbone is used, and to describe effects due to the finiteness of the backbone length, a second set of simulations with free ends of…
LC-Polymers with Axial Chirality
1991
Abstract Liquid crystalline polymers with axial chirality are prepared. These polymers are chiral, not due to a single asymmetric carbon atom, but due to a larger molecular fragment, which is chiral as a whole. They exhibit cholesteric and chiral smectic C* phases. Dielectric spectroscopy proves strong ferroelectric properties in the chiral smectic C* phases of these polymers.
Unconventional ordering behavior of semi-flexible polymers in dense brushes under compression
2014
Using a coarse-grained bead-spring model for semi-flexible macromolecules which form a polymer brush, the structure and dynamics of the polymers were investigated, varying the chain stiffness and the grafting density. The anchoring conditions for the grafted chains were chosen such that their first bonds were oriented along the normal to the substrate plane. The compression of such a semi-flexible brush by a planar piston was observed to be a two-stage process: for a small compression the chains were shown to contract by "buckling" deformation whereas for a larger compression the chains exhibited a collective (almost uniform) bending deformation. Thus, the stiff polymer brush underwent a 2n…
Effect of the solvent quality on the structural rearrangement of spherical brushes: coarse-grained models
2012
A coarse-grained model for flexible polymers end-grafted to repulsive spherical nanoparticles is studied for various polymer lengths, grafting densities, and nanoparticle sizes by molecular dynamics simulations, considering variable solvent quality in the framework of an implicit solvent treatment. Below the theta point, the tuning of the temperature strongly influences the coverage of the nanoparticle surface by collapsed single chains or clusters of several chains. The shape and size of the aggregates depend on the number of monomers and surface density of the polymers. Specifically we analyzed the effect of the solvent quality on the density profiles and radius of gyration of the single …
Zero-field NMR of urea : spin-topology engineering by chemical exchange
2021
Well-resolved and information-rich J-spectra are the foundation for chemical detection in zero-field NMR. However, even for relatively small molecules, spectra exhibit complexity, hindering the analysis. To address this problem, we investigate an example biomolecule with a complex J-coupling network─urea, a key metabolite in protein catabolism─and demonstrate ways of simplifying its zero-field spectra by modifying spin topology. This goal is achieved by controlling pH-dependent chemical exchange rates of 1H nuclei and varying the composition of the D2O/H2O mixture used as a solvent. Specifically, we demonstrate that by increasing the proton exchange rate in the [13C,15N2]-urea solution, the…
Pattern-recognising Polymer Adsorption on Structured Surfaces: Gaussian Polymers vs. Freely Jointed Chains
2014
Abstract Selective adsorption of homopolymers is exploited as a model for pattern recognition. To this end the strong adsorption regime of Gaussian polymers adsorbed on a regularly structured surface is investigated for square and triangular lattices within a discrete Edwards model. The equilibrium behaviour of the specific heat, the gyration tensor and the (nematic) bond order tensor are analysed and compared to the properties for adsorbed freely jointed polymer chains.
A fast Monte Carlo algorithm for studying bottle-brush polymers
2011
Obtaining reliable estimates of the statistical properties of complex macromolecules by computer simulation is a task that requires high computational effort as well as the development of highly efficient simulation algorithms. We present here an algorithm combining local moves, the pivot algorithm, and an adjustable simulation lattice box for simulating dilute systems of bottle-brush polymers with a flexible backbone and flexible side chains under good solvent conditions. Applying this algorithm to the bond fluctuation model, very precise estimates of the mean square end-to-end distances and gyration radii of the backbone and side chains are obtained, and the conformational properties of s…