Search results for "Biophysics"

showing 10 items of 3515 documents

Apigenin‐induced nitric oxide production involves calcium‐activated potassium channels and is responsible for antiangiogenic effects

2007

Summary. Background: The dietary flavonoid apigenin (Api) has been demonstrated to exert multiple beneficial effects upon the vascular endothelium. The aim of this study was to examine whether Ca2+-activated K+ channels (KCa) are involved in endothelial nitric oxide (NO) production and antiangiogenic effects.Methods: Endothelial NO generation was monitored using a cyclic guanosine monophosphate radioimmunoassay. KCa activity and changes of the intracellular Ca2+ concentration [Ca2+]i were analyzed using the fluorescent dyes bis-barbituric acid oxonol, potassium-binding benzofuran isophthalate, and fluo-3. The endothelial angiogenic parameters measured were cell proliferation, [3H]-thymidine…

Umbilical VeinsPotassium ChannelsTime FactorsRadioimmunoassayAngiogenesis InhibitorsNitric OxideApaminModels BiologicalNitric oxidechemistry.chemical_compoundCell MovementHumansApigeninPhosphorylationProtein kinase BCyclic guanosine monophosphateCells CulturedChemistryHematologyHyperpolarization (biology)IberiotoxinCalcium-activated potassium channelBiochemistryBiophysicsCalciumEndothelium VascularIntracellularSignal TransductionJournal of Thrombosis and Haemostasis
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Deep conservation of bivalve nacre proteins highlighted by shell matrix proteomics of the Unionoida Elliptio complanata and Villosa lienosa.

2016

The formation of the molluscan shell nacre is regulated to a large extent by a matrix of extracellular macromolecules that are secreted by the shell-forming tissue, the mantle. This so-called ‘calcifying matrix’ is a complex mixture of proteins, glycoproteins and polysaccharides that is assembled and occluded within the mineral phase during the calcification process. Better molecular-level characterization of the substances that regulate nacre formation is still required. Notable advances in expressed tag sequencing of freshwater mussels, such as Elliptio complanata and Villosa lienosa , provide a pre-requisite to further characterize bivalve nacre proteins by a proteomic approach. In this…

Unionidae0301 basic medicineUnionoida[ SDV.BA.ZI ] Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyVillosa lienosaBiomedical EngineeringBiophysicsLife Sciences–Earth Science interfaceBioengineeringBiologyProteomicsBiochemistrybivalveEvolution MolecularBiomaterials03 medical and health sciencesPaleontologyCalcification PhysiologicproteomicsAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]shell nacreShell matrixAnimalscalcium carbonate14. Life underwaterNacreMantle (mollusc)chemistry.chemical_classificationExtracellular Matrix ProteinsElliptiobiology.organism_classificationbiomineralization[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology030104 developmental biologyBiochemistrychemistry[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]organic matrix proteinsGlycoproteinBiotechnologyBiomineralization
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Organization and expression of the chum salmon insulin-like growth factor II gene

1997

AbstractIGF-II plays an important role in growth and development of vertebrates. In the present study, the characterization of the first fish IGF-II gene, chum salmon IGF-II, is described. The sIGF-II gene consists of four exons, spanning a region of 9 kbp, that encode the 214 aa IGF-II precursor. While the amino acid sequences of fully processed IGF-II of salmon and mammalian species are very similar, the prepro-peptide sequence deviates extensively in the signal- and E-peptide domains. The transcription initiation site of the sIGF-II gene was localized within a 30 nt region employing RT-PCR. Using sIGF-II promoter-luciferase constructs it was demonstrated that the sIGF-II gene has a relat…

Untranslated regionBase pairMolecular Sequence DataBiophysicsBiologyTransfectionPolymerase Chain ReactionBiochemistryExonSalmonStructural BiologyGene expressionTumor Cells CulturedGeneticsAnimalsHumansProtein PrecursorsPromoter Regions GeneticInsulin-like growth factor IIMolecular BiologyGeneDNA PrimersGeneticsRegulation of gene expressionchemistry.chemical_classificationBase SequencefungiExonsCell BiologyTransfectionRecombinant ProteinsAmino acidGene structureOncorhynchus ketaFishGene Expression RegulationchemistryOncorhynchus mykissGene expressionFEBS Letters
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Design of novel small molecule base-pair recognizers of toxic CUG RNA transcripts characteristics of DM1.

2020

Graphical abstract

Untranslated regioncongenital hereditary and neonatal diseases and abnormalitiesBase pairMyotonic dystrophyBiophysicsComputational biologyBase recognitionBiologyBiochemistry03 medical and health scienceschemistry.chemical_compound0302 clinical medicineStructural BiologyRNA targetingGeneticsMBNL1030304 developmental biologyComputingMethodologies_COMPUTERGRAPHICS0303 health sciencesDrug discoveryAlternative splicingRNABiological activityNon-coding RNAComputer Science Applicationschemistry030220 oncology & carcinogenesisMolecular modellingTP248.13-248.65Small moleculeBiotechnologyResearch ArticleComputational and structural biotechnology journal
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The pro-opiomelanocortin gene of the zebrafish (Danio rerio)

2003

The cDNA and the gene for pro-opiomelanocortin (POMC) in the zebrafish (Danio rerio) were isolated and analyzed. The gene consists of three exons and two short introns and has a similar overall structural organization as in Homo sapiens. Intron 1 (339 bp) divides the 5(') untranslated region from the coding region while intron 2 (1522 bp) is located between the signal peptide and the sequence encoding ACTH. Transcription starts 26 bp downstream of a TATA box and there is one polyadenylation signal in the 3(') untranslated region. The cDNA comprises of 964 bp with an open reading frame encoding a 222 amino acid hormone prepropeptide that is split into six putative hormones. Sequence comparis…

Untranslated regionendocrine systemPro-OpiomelanocortinMolecular Sequence DataBiophysicsDanioBiochemistryExonAnimalsHumansCoding regionAmino Acid SequenceRNA MessengerCloning MolecularMolecular BiologyPeptide sequenceGeneZebrafishPhylogenyZebrafishGeneticsBase SequencebiologyIntronChromosome MappingCell BiologyZebrafish Proteinsbiology.organism_classificationSequence Alignmenthormones hormone substitutes and hormone antagonistsBiochemical and Biophysical Research Communications
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Take-off analysis of the Olympic ski jumping competition (HS-106m).

2007

Abstract The take-off phase (approximately 6 m) of the jumps of all athletes participating in the individual HS-106 m hill ski jumping competition at the Torino Olympics was filmed with two high-speed cameras. The high altitude of the Pragelato ski jumping venue (1600 m) and slight tail wind in the final jumping round were expected to affect the results of this competition. The most significant correlation with the length of the jump was found in the in-run velocity ( r =0.628, p n =50). This was a surprise in Olympic level ski jumping, and suggests that good jumpers simply had smaller friction between their skis and the in-run tracks and/or the aerodynamic quality of their in-run position …

Upper bodyRehabilitationBiomedical EngineeringBiophysicsVideotape RecordingSki jumpingmedicine.disease_causeSki jumpingBiomechanical PhenomenaCompetition (economics)JumpingSkiingSki jumping; Take-off; Winter OlympicGamesStatisticsJumpmedicineHumansOrthopedics and Sports MedicineComputer SimulationWinter OlympicGamesTake-offSimulationMathematicsJournal of biomechanics
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Multiconfigurational second-order perturbation calculation of the electronic absorption spectrum of trisilane, Si3H8

2002

The low-lying singlet excited states of trisilane have been computed using the complete active space self-consistent field (CASSCF) method, second-order perturbation theory (CASPT2), and the extended multistate CASPT2 (MS-CASPT2) approach, and a generally contracted basis set of atomic natural orbitals (ANOs) including Rydberg functions. The ground state structure was obtained from an ab initio optimization at the second-order M⊘ller-Plesset perturbation theory (MP2) level using Dunning's correlation-consistent triple-zeta basis set (cc-pVTZ) and agrees well with experiment. The calculation of the electronic transitions included the lower valence excited states and two Rydberg series conver…

Valence (chemistry)ChemistryTrisilaneBiophysicsAb initioCondensed Matter Physicschemistry.chemical_compoundsymbols.namesakeExcited stateRydberg formulasymbolsComplete active spacePhysical and Theoretical ChemistryAtomic physicsGround stateMolecular BiologyBasis setMolecular Physics
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Phase coexistence in finite van der Waals systems

1999

Phase coexistence in finite systems obeying van der Waals equation of state is studied by minimizing a model free energy function for a spherical liquid droplet and a gaseous phase around it. Phase diagrams are calculated for finite systems with a large range of sizes. According to this model, the highest temperature where a droplet and vapour can exist in equilibrium decreases as N −0.4, where N is the number of particles in the system. The model predicts higher equilibrium vapour pressures than molecular dynamics simulations.

Van der Waals equationParticle numberChemistryBiophysicsThermodynamicsCondensed Matter PhysicsTheorem of corresponding statesPhysics::Fluid Dynamicssymbols.namesakeMolecular dynamicsPhase (matter)symbolsVan der Waals radiusPhysical and Theoretical Chemistryvan der Waals forceMolecular BiologyPhase diagram
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The covalently immobilized antimicrobial peptide LL37 acts as a VEGF mimic and stimulates endothelial cell proliferation

2018

The chemical coupling of growth factors to solid substrates are discussed as an alternative to delivery systems. Utilizing entire proteins for this application is hampered by safety and stability considerations. Instead, growth factor mimicking peptides are of great interest for biomedical applications, such as tissue engineering, due to their purity and stability. The human cathelicidin derived antimicrobial peptide LL37, beside its microbicidal activity, was shown to stimulate endothelial cell growth when used in a soluble form. Here, in a novel approach, spacer mediated immobilization, but not direct conjugation of LL37, to a gold substrate was shown to result in a pronounced mitogenic e…

Vascular Endothelial Growth Factor A0301 basic medicinemedicine.medical_treatmentBiophysicsPeptideBiochemistryCathelicidin03 medical and health scienceschemistry.chemical_compound0302 clinical medicineTissue engineeringCathelicidinsmedicineHumansMolecular BiologyCells CulturedCell Proliferationchemistry.chemical_classificationDose-Response Relationship DrugCell growthGrowth factorEndothelial CellsCell BiologyVascular endothelial growth factorEndothelial stem cellVascular endothelial growth factor A030104 developmental biologychemistry030220 oncology & carcinogenesisBiophysicsAdsorptionGoldAntimicrobial Cationic PeptidesBiochemical and Biophysical Research Communications
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Scaffold vascularization in vivo driven by primary human osteoblasts in concert with host inflammatory cells.

2011

Successful cell-based tissue engineering requires a rapid and thorough vascularization in order to ensure long-term implant survival and tissue integration. The vascularization of a scaffold is a complex process, and is modulated by the presence of transplanted cells, exogenous and endogenous signaling proteins, and the host tissue reaction, among other influencing factors. This paper presents evidence for the significance of pre-seeded osteoblasts for the in vivo vascularization of a biodegradable scaffold. Human osteoblasts, cultured on silk fibroin micronets in vitro, migrated throughout the interconnected pores of the scaffold and produced extensive bone matrix. When these constructs we…

Vascular Endothelial Growth Factor AScaffoldMaterials scienceTime FactorsAngiogenesisCellBiophysicsFibroinNeovascularization PhysiologicBioengineeringMice SCIDBiomaterialsProsthesis ImplantationMiceTissue engineeringIn vivomedicineAnimalsHumansCells CulturedInflammationOsteoblastsTissue ScaffoldsIn vitroCell biologymedicine.anatomical_structureMechanics of MaterialsGiant cellCeramics and CompositesBlood VesselsFibroinsBiomedical engineeringBiomaterials
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