Search results for "CLUSTER ANALYSIS"
showing 10 items of 848 documents
Assessment of nonnegative matrix factorization algorithms for electroencephalography spectral analysis.
2020
AbstractBackgroundNonnegative matrix factorization (NMF) has been successfully used for electroencephalography (EEG) spectral analysis. Since NMF was proposed in the 1990s, many adaptive algorithms have been developed. However, the performance of their use in EEG data analysis has not been fully compared. Here, we provide a comparison of four NMF algorithms in terms of accuracy of estimation, stability (repeatability of the results) and time complexity of algorithms with simulated data. In the practical application of NMF algorithms, stability plays an important role, which was an emphasis in the comparison. A Hierarchical clustering algorithm was implemented to evaluate the stability of NM…
SNPs detection by eBWT positional clustering
2019
Sequencing technologies keep on turning cheaper and faster, thus putting a growing pressure for data structures designed to efficiently store raw data, and possibly perform analysis therein. In this view, there is a growing interest in alignment-free and reference-free variants calling methods that only make use of (suitably indexed) raw reads data. We develop the positional clustering theory that (i) describes how the extended Burrows–Wheeler Transform (eBWT) of a collection of reads tends to cluster together bases that cover the same genome position (ii) predicts the size of such clusters, and (iii) exhibits an elegant and precise LCP array based procedure to locate such clusters in the e…
Euclid preparation. XII. Optimizing the photometric sample of the Euclid survey for galaxy clustering and galaxy-galaxy lensing analyses
2021
Pocino, A., et al. (Euclid Collaboration)
Automated approach for indirect immunofluorescence images classification based on unsupervised clustering method
2018
Autoimmune diseases (ADs) are a collection of many complex disorders of unknown aetiology resulting in immune responses to self-antigens and are thought to result from interactions between genetic and environmental factors. ADs collectively are amongst the most prevalent diseases in the U.S., affecting at least 7% of the population. The diagnosis of ADs is very complex, the standard screening methods provides seeking and recognizing of Antinuclear Antibodies (ANA) by Indirect ImmunoFluorescence (IIF) based on HEp-2 cells. In this paper an automatic system able to identify and classify the Centromere pattern is presented. The method is based on the grouping of centromeres present on the cell…
Recognition of Cardiac Arrhythmia by Means of Beat Clustering on ECG-Holter Recordings
2012
The follow-up of some cardiac diseases may be achieved by ECG-holter record analysis. A heartbeat clustering method can be used to reduce the usually high computational cost of such Holter analysis. This study describes a method aimed at cardiac arrhythmia recognition based on this approach, by means of unsupervised inspection of morphologically similar heartbeat groups. Singular Value Decomposition (SVD) is used as the feature selection method since the complexity increases exponentially with the number of features. A modification of the k-means algorithm was developed for centroid computation, taking into account heartbeat length changes. Experimental set consisted of ECG records from the…
Clustering Algorithms for MRI
1991
Magnetic Resonance Imaging (MRI) plays a relevant role in the design of systems for computer assisted diagnosis. MR-images are multi-dimensional in nature; physicians have to combine several perceptual information images to perform the tissue classification needed for diagnosis. Automatic clustering methods help to discriminate relevant features and to perform a preliminary segmentation of the image; it can guide the final manual classification of body-tissues. Three clustering techniques and their integration in a MRI-system are described. Their performance and accuracy was evaluated on synthetic and real image-data. A comparison of our approach with the tissue-classification done by a rad…
A fully automatic 2D segmentation method for uterine fibroid in MRgFUS treatment evaluation
2015
PurposeMagnetic Resonance guided Focused UltraSound (MRgFUS) represents a non-invasive surgical approach that uses thermal ablation to treat uterine fibroids. After the MRgFUS treatment, an operator must manually segment the treated fibroid areas to evaluate the NonPerfused Volume (NPV). This manual approach is operator-dependent, introducing issues of result reproducibility, which could lead to errors in the subsequent follow-up phase. Moreover, manual segmentation is time-consuming, and can have a negative impact on the optimization of both machine-time and operator-time. MethodTo address these issues, in this paper a novel fully automatic method based on the unsupervised Fuzzy C-Means cl…
Effectiveness of benralizumab in severe eosinophilic asthma: Distinct sub-phenotypes of response identified by cluster analysis
2022
Background: Benralizumab is effective in severe eosinophilic asthma (SEA), but suboptimal responses are observed in some patients. Although several factors have been associated with benralizumab response, no cluster analysis has yet been undertaken to identify different responsiveness sub-phenotypes. Objective: To identify SEA sub-phenotypes with differential responsiveness to benralizumab. Methods: One hundred and five patients diagnosed with SEA who had completed 6 months of benralizumab treatment were included in a hierarchical cluster analysis based on a set of clinical variables that can be easily collected in routine practice (age, age at disease onset, disease length, allergen sensit…
Molecular Surveillance of HIV-1 in Madrid, Spain: a Phylogeographic Analysis ▿
2011
ABSTRACT The molecular epidemiology of HIV-1 is constantly changing, mainly as a result of human migratory flows and the high adaptive ability of the virus. In recent years, Spain has become one of Europe's main destinations for immigrants and one of the western European countries with the highest rates of HIV-positive patients. Using a phylogeographic approach, we have analyzed the relationship between HIV-1 variants detected in immigrant and native populations of the urban area of Madrid. Our project was based on two coincidental facts. First, resistance tests were extended to naïve and newly diagnosed patients, and second, the Spanish government legislated the provision of legal status t…
U-search: a meta engine for creation of knowledge paths on the web
2010
The main tools used to find digital contents in the Web are search engines and directories but they are not presently able to understand the user specific needs and starting knowledge. This work presents "U-Search" a new meta engine that allows to create knowledge paths on the Web based on specific user requirements and knowledge levels. To this end, we consider different searcher categories such as a "basic searcher" who knows little about a topic and will look for more information, a "deep searcher" who will look for specific details on a topic that he/she already knows and a "wide searcher" who will look for expanding his/her knowledge domain with topics that are loosely related to the s…