Search results for "ChIP"
showing 10 items of 386 documents
Improving topological mapping on NoCs
2010
Networks-on-Chip (NoCs) have been proposed as an efficient solution to the complex communications on System-on-chip (SoCs). The design flow of network-on-chip (NoCs) include several key issues, and one of them is the decision of where cores have to be topologically mapped. This thesis proposes a new approach to the topological mapping strategy for NoCs. Concretely, we propose a new topological mapping technique for regular and irregular NoC platforms and its application for optimizing application specific NoC based on distributed and source routing.
Application based on dynamic reconfiguration of field-programmable gate arrays: JPEG 2000 arithmetic decoder
2005
This paper describes the implementation of a part of the JPEG 2000 algorithm (MQ decoder and arithmetic decoder) on a field-programmable gate array (FPGA) board by using dynamic reconfiguration. A comparison between static and dynamic reconfiguration is presented, and new analysis criteria (spatiotemporal efficiency, logic cost, and performance time) have been defined. The MQ decoder and arithmetic decoder are attractive for dynamic reconfiguration implementation in applications without parallel processing. This implementation is done on an architecture designed to study the dynamic reconfiguration of FPGAs: the ARDOISE architecture. The obtained implementation, based on four partial config…
Interpretable machine learning models for single-cell ChIP-seq imputation
2019
AbstractMotivationSingle-cell ChIP-seq (scChIP-seq) analysis is challenging due to data sparsity. High degree of data sparsity in biological high-throughput single-cell data is generally handled with imputation methods that complete the data, but specific methods for scChIP-seq are lacking. We present SIMPA, a scChIP-seq data imputation method leveraging predictive information within bulk data from ENCODE to impute missing protein-DNA interacting regions of target histone marks or transcription factors.ResultsImputations using machine learning models trained for each single cell, each target, and each genomic region accurately preserve cell type clustering and improve pathway-related gene i…
NoC Reconfiguration for CMP Virtualization
2011
At NoC level, the traffic interferences can be drastically reduced by using virtualization mechanisms. An effective strategy to virtualize a NoC consists in dividing the network in different partitions, each one serving different applications and traffic flows. In this paper, we propose a NoC reconfiguration mechanism to support NoC virtualization under real scenarios. Dynamic reassignment of network resources to different partitions is allowed in order to NoC dynamically adapts to application needs. Evaluation results show a good behavior of CMP virtualization.
Exploring NoC Virtualization Alternatives in CMPs
2012
Chip Multiprocessor systems (CMPs) contain more and more cores in every new generation. However, applications for these systems do not scale at the same pace. Thus, in order to obtain a good utilization several applications will need to coexist in the system and in those cases virtualization of the CMP system will become mandatory. In this paper we analyze two virtualization strategies at NoC-level aiming to isolate the traffic generated by each application to reduce or even eliminate interferences among messages belonging to different applications. The first model handles most interferences among messages with a virtual-channels (VCs) implementation minimizing both execution time and netwo…
Conservation genetics of insular **Podarcis** lizards using partial cytochrome b sequences
1998
Sequence data derived from a 306 bp fragment of mitochondrial cytochrome b and molecular variance estimates were used to investigate the genetic population structure of the endangered and endemic lizard Podarcis atrata of the Columbretes archipelago (Mediterranean, Spain). Our results show a very high and significant among-population genetic differentiation. FST values and phylogenetic analyses confirm the evolutionary distinctiveness of P. atrata populations, suggesting that the populations of these islands deserve special protection measures. The populations of the two islands Columbrete Grande and Mancolibre are less differentiated than those of Foradada and Lobo, and seem to have retain…
Utility of island populations in re-introduction programmes--relationships between Arabian gazelles (Gazella arabica) from the Farasan Archipelago an…
2014
Understanding local adaptation and population differentiation is vital to the success of re-introduction initiatives. As other mammals living on islands, Arabian gazelles (G. arabica) show reduced body size on the Farasan archipelago, which we corroborated in this study through morphometric analyses of skulls. In the light of the steep population decline on the Arabian Peninsula – but stable population development on the archipelago – we tested the potential suitability of Farasan gazelles as a source for re-introductions on the mainland. We therefore investigated genetic differentiation between Farasan and mainland populations using eleven nuclear microsatellite loci and detected a distinc…
A novel approach to enhance mechanical properties during recycling of aluminum alloy scrap through friction stir consolidation
2021
Solid state recycling (SSR) is a new approach for making metals recycling more efficient with respect to remelting-based approaches. Friction stir consolidation (FSC) is a new solid-state process that is employed to recycle metallic scraps. Until now, a single-step FSC process was applied to recycled metal chips. During the single-step approach, critical processes parameters, especially processing time and rotational speed, are considered vital to control the quality and mechanical properties of the billet. However, the effectiveness of process parameters is highly restricted by challenging masses of recycling chips and machine competency. The present study first highlights the issues of th…
Magnetic particle mixing with magnetic micro-convection for microfluidics
2015
International audience; In this paper we discuss the magnetic micro-convection phenomenon as a tool for mixing enhancement in microfluidics systems in cases when one of the mis-cible fluids is a magnetic particle colloid. A system of a water-based magnetic fluid and water is investigated experimentally under homogeneous magnetic field in a Hele-Shaw cell. Subsequent image analysis both qualitatively and quan-titatively reveals the high enhancement of mixing efficiency provided by this method. The mixing efficiency dependence on the magnetic field and the phys-ical limits is discussed. A suitable model for a continuous-flow microfluidics setup for mixing with magnetic micro-convection is als…
High performance hardware correlation coefficient assessment using programmable logic for ECG signals
2003
Abstract Correlation coefficient is frequently used to obtain cardiac rhythm by peak estimation and appreciate differences in the signal compared to a pattern. This work focuses on the description of a real-time correlation assessment procedure. Applied to electrocardiogram (ECG) signals, a new correlation value is obtained every new sample and pulse detection information is provided. The ECG pattern is internally stored and can be changed when desired. This procedure is useful in Systems on Chip implementation and can be applied to design compact ECG monitoring systems consisting on a system on chip where programmable logic offloads the main processor. A Xilinx FPGA device has been used fo…