Search results for "Complexity"

Networks in biological systems: An investigation of the Gene Ontology as an evolving network

2009

Many biological systems can be described as networks where diFFerent elements interact, in order to perform biological processes. We introduce a network associated with the Gene Ontology. Specifically, we construct a correlation-based network where the vertices are the terms of the Gene Ontology and the link between each two terms is weighted on the basis of the number of genes that they have in common. We analyze a filtered network obtained from the correlation-based network and we characterize its evolution over different releases of the Gene Ontology.

Textual data compression in computational biology: Algorithmic techniques

2012

Abstract In a recent review [R. Giancarlo, D. Scaturro, F. Utro, Textual data compression in computational biology: a synopsis, Bioinformatics 25 (2009) 1575–1586] the first systematic organization and presentation of the impact of textual data compression for the analysis of biological data has been given. Its main focus was on a systematic presentation of the key areas of bioinformatics and computational biology where compression has been used together with a technical presentation of how well-known notions from information theory have been adapted to successfully work on biological data. Rather surprisingly, the use of data compression is pervasive in computational biology. Starting from…

The evolution of metazoan α-carbonic anhydrases and their roles in calcium carbonate biomineralization

2014

The carbonic anhydrase (CA; EC 4.2.1.1) superfamily is a class of ubiquitous metallo-enzymes that catalyse the reversible hydration of carbon dioxide. The ?-CA family, present in all metazoan clades, is a key enzyme involved in a wide range of physiological functions including pH regulation, respiration, photosynthesis, and biocalcification. This paper reviews the evolution of the ?-CA family, with an emphasis on metazoan ?-CA members involved in biocalcification. Phylogenetic analyses reveal a complex evolutionary history of ?-CAs, and suggest ?-CA was independently co-opted into a variety of skeleton forming roles (e.g. as a provider of HCO3? ions, a structural protein, a nucleation activ…

Experimental demonstration of phase bistability in a broad-area optical oscillator with injected signal

2015

We demonstrate experimentally that a broad-area laserlike optical oscillator (a nondegenerate photorefractive oscillator) with structured injected signal displays two-phase patterns. The technique [de Valc\'arcel and Staliunas, Phys. Rev. Lett. 105, 054101 (2010)] consists in spatially modulating the injection, so that its phase alternates periodically between two opposite values, i.e., differing by $\ensuremath{\pi}$.

Functionally active complement proteins C6 and C7 detected in C6- and C7-deficient individuals

1991

SUMMARYTwo sensitive sandwich ELISAs based on monoclonal antibodies directed to native C6 and C7 allowed the detection and quantitation of these complement proteins in 20 out of 37 serum samples from individuals who had previously been classified as deficient in these proteins as assessed by immunochemical and/or functional assays. Furthermore, serum from four C6-deficient and one combined C6-/C7-deficient individual showed an increase in the terminal complement complex (TCC) and a decrease in native C6 and C7 after complement activation as assayed by specific ELISAs. Despite their (incomplete) deficiencies, these individuals therefore possess functionally active terminal complement protein…

Towards understanding the complexity of cardiovascular oscillations: Insights from information theory.

2018

Abstract Cardiovascular complexity is a feature of healthy physiological regulation, which stems from the simultaneous activity of several cardiovascular reflexes and other non-reflex physiological mechanisms. It is manifested in the rich dynamics characterizing the spontaneous heart rate and blood pressure variability (HRV and BPV). The present study faces the challenge of disclosing the origin of short-term HRV and BPV from the statistical perspective offered by information theory. To dissect the physiological mechanisms giving rise to cardiovascular complexity in different conditions, measures of predictive information, information storage, information transfer and information modificati…

Precīzie kvantu algoritmi, izmantojot 1-kvantu-vaicājuma izsaukumus

2018

Darbā ir analizēti zināmi unikāli precīzie kvantu algoritmi, kuru īpašības ir atšķirīgas no citiem literatūrā atrodamiem algoritmiem, un uzsākts pētīt iespējas vispārināt šajos algoritmos esošos paņēmienus. Darbā ir noformulēts jauns skaitļošanas modelis, kas ir saistīts ar precīzo kvantu vaicājumu modeli. Veikti skaitliski aprēķini, lai palīdzētu saprast jaunā modeļa iespējas un ierobežojumus. Izteiktas hipotēzes un virzieni, kādos turpināt analīzi un pētījumu.

A method to reduce the FP/imm number through CC and MLO views comparison in mammographic images

2008

In this paper we propose a method to reduce the FP/imm number through CC and MLO mammographic views comparison of the same patient. The proposed solution uses the symmetry properties of the breast to compute a geometric transformation that permits to represent the two images in comparable coordinates systems. Through this method, potential pathological ROIs of one of the projections are correlated with the ROIs in the second view. To show the effectiveness of the result we apply the method on a dataset composed of 112 couples of pathological images. Experiments shows that method enables a reduction by up to 700/0 of the FP/imm number detected after the classification step

Genotype‐phenotype correlations in Brazilian patients with hereditary angioedema due to C1 inhibitor deficiency. [Carta]

2019

Editoriale

2020

Il numero 7 di AGATHÓN raccoglie saggi, studi, ricerche e progetti sul tema dal titolo ‘Dal Mega al Nano: la Complessità del Progetto Multiscalare’, tema indissolubilmente legato alla sempre maggiore richiesta di trans e multidisplinarietà del progetto. La capacità di effettuare ‘salti di scala’, di agire su scale diverse e di costruirne di nuove o di mutare il senso di quelle comunemente accettate è una pratica comune dell’approccio al progetto, e riguarda da sempre gli architetti, gli ingegneri, i designer e gli artisti, nei molteplici significati simbolici e reali della misura di un territorio, di una città, di un’architettura e di un oggetto. I concetti di scala e di misura sono indispe…