Search results for "Computer Science - Computer Vision and Pattern Recognition"
showing 10 items of 105 documents
Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering
2018
Positron Emission Tomography scan images are extensively used in radiotherapy planning, clinical diagnosis, assessment of growth and treatment of a tumor. These all rely on fidelity and speed of detection and delineation algorithm. Despite intensive research, segmentation remained a challenging problem due to the diverse image content, resolution, shape, and noise. This paper presents a fast positron emission tomography tumor segmentation method in which superpixels are extracted first from the input image. Principal component analysis is then applied on the superpixels and also on their average. Distance vector of each superpixel from the average is computed in principal components coordin…
Myocardial Infarction Quantification from Late Gadolinium Enhancement MRI Using Top-Hat Transforms and Neural Networks
2019
Significance: Late gadolinium enhanced magnetic resonance imaging (LGE-MRI) is the gold standard technique for myocardial viability assessment. Although the technique accurately reflects the damaged tissue, there is no clinical standard for quantifying myocardial infarction (MI), demanding most algorithms to be expert dependent. Objectives and Methods: In this work a new automatic method for MI quantification from LGE-MRI is proposed. Our novel segmentation approach is devised for accurately detecting not only hyper-enhanced lesions, but also microvascular-obstructed areas. Moreover, it includes a myocardial disease detection step which extends the algorithm for working under healthy scans.…
Domain-specific transfer learning in the automated scoring of tumor-stroma ratio from histopathological images of colorectal cancer
2023
Tumor-stroma ratio (TSR) is a prognostic factor for many types of solid tumors. In this study, we propose a method for automated estimation of TSR from histopathological images of colorectal cancer. The method is based on convolutional neural networks which were trained to classify colorectal cancer tissue in hematoxylin-eosin stained samples into three classes: stroma, tumor and other. The models were trained using a data set that consists of 1343 whole slide images. Three different training setups were applied with a transfer learning approach using domain-specific data i.e. an external colorectal cancer histopathological data set. The three most accurate models were chosen as a classifie…
MHT-X: Offline Multiple Hypothesis Tracking with Algorithm X
2021
An efficient and versatile implementation of offline multiple hypothesis tracking with Algorithm X for optimal association search was developed using Python. The code is intended for scientific applications that do not require online processing. Directed graph framework is used and multiple scans with progressively increasing time window width are used for edge construction for maximum likelihood trajectories. The current version of the code was developed for applications in multiphase hydrodynamics, e.g. bubble and particle tracking, and is capable of resolving object motion, merges and splits. Feasible object associations and trajectory graph edge likelihoods are determined using weak mas…
A method for automatic forensic facial reconstruction based on dense statistics of soft tissue thickness.
2019
In this paper, we present a method for automated estimation of a human face given a skull remain. The proposed method is based on three statistical models. A volumetric (tetrahedral) skull model encoding the variations of different skulls, a surface head model encoding the head variations, and a dense statistic of facial soft tissue thickness (FSTT). All data are automatically derived from computed tomography (CT) head scans and optical face scans. In order to obtain a proper dense FSTT statistic, we register a skull model to each skull extracted from a CT scan and determine the FSTT value for each vertex of the skull model towards the associated extracted skin surface. The FSTT values at p…
Deep Learning for fully automatic detection, segmentation, and Gleason Grade estimation of prostate cancer in multiparametric Magnetic Resonance Imag…
2021
The emergence of multi-parametric magnetic resonance imaging (mpMRI) has had a profound impact on the diagnosis of prostate cancers (PCa), which is the most prevalent malignancy in males in the western world, enabling a better selection of patients for confirmation biopsy. However, analyzing these images is complex even for experts, hence opening an opportunity for computer-aided diagnosis systems to seize. This paper proposes a fully automatic system based on Deep Learning that takes a prostate mpMRI from a PCa-suspect patient and, by leveraging the Retina U-Net detection framework, locates PCa lesions, segments them, and predicts their most likely Gleason grade group (GGG). It uses 490 mp…
Convolutional Neural Networks for Multispectral Image Cloud Masking
2020
Convolutional neural networks (CNN) have proven to be state of the art methods for many image classification tasks and their use is rapidly increasing in remote sensing problems. One of their major strengths is that, when enough data is available, CNN perform an end-to-end learning without the need of custom feature extraction methods. In this work, we study the use of different CNN architectures for cloud masking of Proba-V multispectral images. We compare such methods with the more classical machine learning approach based on feature extraction plus supervised classification. Experimental results suggest that CNN are a promising alternative for solving cloud masking problems.
HarrisZ$^+$: Harris Corner Selection for Next-Gen Image Matching Pipelines
2022
Due to its role in many computer vision tasks, image matching has been subjected to an active investigation by researchers, which has lead to better and more discriminant feature descriptors and to more robust matching strategies, also thanks to the advent of the deep learning and the increased computational power of the modern hardware. Despite of these achievements, the keypoint extraction process at the base of the image matching pipeline has not seen equivalent progresses. This paper presents HarrisZ$^+$, an upgrade to the HarrisZ corner detector, optimized to synergically take advance of the recent improvements of the other steps of the image matching pipeline. HarrisZ$^+$ does not onl…
Active Learning Methods for Efficient Hybrid Biophysical Variable Retrieval
2016
Kernel-based machine learning regression algorithms (MLRAs) are potentially powerful methods for being implemented into operational biophysical variable retrieval schemes. However, they face difficulties in coping with large training data sets. With the increasing amount of optical remote sensing data made available for analysis and the possibility of using a large amount of simulated data from radiative transfer models (RTMs) to train kernel MLRAs, efficient data reduction techniques will need to be implemented. Active learning (AL) methods enable to select the most informative samples in a data set. This letter introduces six AL methods for achieving optimized biophysical variable estimat…
Toward a Collective Agenda on AI for Earth Science Data Analysis
2021
In the last years we have witnessed the fields of geosciences and remote sensing and artificial intelligence to become closer. Thanks to both the massive availability of observational data, improved simulations, and algorithmic advances, these disciplines have found common objectives and challenges to advance the modeling and understanding of the Earth system. Despite such great opportunities, we also observed a worrying tendency to remain in disciplinary comfort zones applying recent advances from artificial intelligence on well resolved remote sensing problems. Here we take a position on research directions where we think the interface between these fields will have the most impact and be…