Search results for "DAP"

showing 10 items of 3579 documents

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA…

2020

Genetic variation is the fuel of evolution, with standing genetic variation especially important for short-term evolution and local adaptation. To date, studies of spatiotemporal patterns of genetic variation in natural populations have been challenging, as comprehensive sampling is logistically difficult, and sequencing of entire populations costly. Here, we address these issues using a collaborative approach, sequencing 48 pooled population samples from 32 locations, and perform the first continent-wide genomic analysis of genetic variation in European Drosophila melanogaster. Our analyses uncover longitudinal population structure, provide evidence for continent-wide selective sweeps, ide…

0106 biological sciencesMaleincipient sexual isolationQH301 BiologyAcclimatizationADNGenome Insect01 natural sciencesPopulation genomicsAdaptation; Clines; Demography; Population genomics; Selection; SNPs; Structural variants; Acclimatization; Altitude; Animals; DNA Viruses; Drosophila melanogaster; Europe; Genome Mitochondrial; Haplotypes; Insect Viruses; Male; Phylogeography; Polymorphism Single Nucleotide; Genome Insect; Genomic Structural Variation; Microbiota; Selection GeneticSDG 13 - Climate ActionComputingMilieux_MISCELLANEOUSeducation.field_of_study0303 health sciencesAltitude[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]PE&RCgeneettinen muunteluPhylogeographyDrosophila melanogasterLaboratory of GeneticsTransposable elementnorth-americanmahlakärpäsetSettore BIO/18 - GENETICAselectionLaboratorium voor Erfelijkheidsleeramino-acid polymorphism03 medical and health sciencesGeneticGeneticsAdaptation demographyMicrobiomeAdaptationPolymorphismeducationDrosophilaMolecular BiologySelectionEcology Evolution Behavior and SystematicsDemography[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]DNAchemistryEvolutionary biologyGenome MitochondrialGenomic Structural Variationinversion in(3r)payneAdaptationPopulation genomicsStructural variantsGenètica[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosisadaptation demographyCandidate genenucleotide polymorphismAcademicSubjects/SCI01180chemistry.chemical_compoundMelanogaster2. Zero hungerGenomebiologyMicrobiotaSingle NucleotideClinesclinesMitochondrialEuropepopulaatiogenetiikkatransposable elementsDrosophila melanogasterSNPsnatural-populationspopulation genomicsPopulationnext-generationDrosòfila melanogasterInsect Viruses010603 evolutionary biologyPolymorphism Single NucleotideQH301latitudinal clineGenetic variationAnimalsSelection GeneticSelection (genetic algorithm)DiscoveriesLocal adaptation030304 developmental biologylife-historyAcademicSubjects/SCI01130DNA Virusesstructural variantsDASbiology.organism_classificationHaplotypes13. Climate actionperimä[SDE.BE]Environmental Sciences/Biodiversity and EcologyInsectDNAMolecular Biology and Evolution
researchProduct

Reciprocal extrapolation of species distribution models between two islands – Specialists perform better than generalists and geological data reduces…

2020

Abstract This study aims to test the extrapolation effects of species distribution models (SDM) using three groups of predictor variables: climate, relief and geology (bedrock type). We highlight potential ecological differences for selected taxa, regarding both generalists and specialists in terms of edaphic conditions. We used distributional data of 12 woody species shared by two large Mediterranean islands (Crete and Sicily) to calibrate Maxent models of their potential distribution. We trained models with data from Crete and extrapolated to Sicily and vice versa. We tested ten proxies for the three variable groups and compared AUC values as a measure of model performance. Extrapolation …

0106 biological sciencesMaquisPlant recordsSpecies distributionExtrapolationExtrapolationGeneral Decision SciencesMediterranean islands010501 environmental sciencesGeneralist and specialist species010603 evolutionary biology01 natural sciencesSpecies distribution modelsSicilyEcology Evolution Behavior and Systematics0105 earth and related environmental sciencesgeographygeography.geographical_feature_categoryEcologyBedrockWoody plantsEdaphicSpecies distribution modelGeology15. Life on landPlant recordCreteMediterranean islandMaquiTaxon13. Climate actionSettore BIO/03 - Botanica Ambientale E ApplicataMediterranean ecosystemPhysical geographyMaxentMediterranean IslandsReciprocal
researchProduct

Moving Toward a Strategy for Addressing Climate Displacement of Marine Resources: A Proof-of-Concept

2020

Realistic predictions of climate change effects on natural resources are central to adaptation policies that try to reduce these impacts. However, most current forecasting approaches do not incorporate species-specific, process-based biological information, which limits their ability to inform actionable strategies. Mechanistic approaches, incorporating quantitative information on functional traits, can potentially predict species- and population-specific responses that result from the cumulative impacts of small-scale processes acting at the organismal level, and can be used to infer population-level dynamics and inform natural resources management. Here we present a proof-of-concept study…

0106 biological sciencesMarine conservationSettore BIO/07 - Ecologia010504 meteorology & atmospheric scienceslcsh:QH1-199.5Engraulis encrasicolusProcess (engineering)Computer scienceClimate changeOcean EngineeringAquatic Sciencelcsh:General. Including nature conservation geographical distributionclimate-informed management; Dynamic Energy Budget model; Engraulis encrasicolus; life-history traits; scenarios; temperature increaseOceanography01 natural sciencesEnvironmental dataDynamic Energy Budget model14. Life underwaterNatural resource managementlcsh:Scienceclimate-informed management0105 earth and related environmental sciencesWater Science and TechnologyGlobal and Planetary Changebusiness.industry010604 marine biology & hydrobiologyEnvironmental resource managementscenariosNatural resourcelife-history traitsAdaptive management13. Climate actionSettore BIO/03 - Botanica Ambientale E Applicatatemperature increaselcsh:QFisheries managementbusiness
researchProduct

Interbreeding between local and translocated populations of a cleaner fish in an experimental mesocosm predicts risk of disrupted local adaptation

2019

Source at https://doi.org/10.1002/ece3.5246. Translocation of organisms within or outside its native range carries the risk of modifying the community of the recipient ecosystems and induces gene flow between locally adapted populations or closely related species. In this study, we evaluated the genetic consequences of large‐scale translocation of cleaner wrasses that has become a common practice within the salmon aquaculture industry in northern Europe to combat sea lice infestation. A major concern with this practice is the potential for hybridization of escaped organisms with the local, recipient wrasse population, and thus potentially introduce exogenous alleles and breaking down coadap…

0106 biological sciencesMating behaviorPopulationReproductive fitnessZoologyVDP::Landbruks- og Fiskerifag: 900::Fiskerifag: 920::Akvakultur: 922Parentage assignmentBiologyCleaner fish010603 evolutionary biology01 natural sciencesGene flowMesocosm03 medical and health scienceslcsh:QH540-549.5VDP::Agriculture and fishery disciplines: 900::Fisheries science: 920::Fish health: 923VDP::Landbruks- og Fiskerifag: 900::Fiskerifag: 920::Fiskehelse: 923Corkwing wrasseeducationMicrosatellitesEcology Evolution Behavior and SystematicsOriginal Research030304 developmental biologyNature and Landscape ConservationLocal adaptationVDP::Agriculture and fishery disciplines: 900::Fisheries science: 920::Aquaculture: 9220303 health scienceseducation.field_of_studySymphodus melopsEcologyReproductive successbiology.organism_classificationWrasselcsh:EcologyCorkwing wrasse
researchProduct

Relationship between maternal transfer of immunity and mother fecundity in an insect.

2012

Trans-generational immune priming (TGIP) corresponds to the plastic adjustment of offspring immunity as a result of maternal immune experience. TGIP is expected to improve mother's fitness by improving offspring individual performance in an environment where parasitism becomes more prevalent. However, it was recently demonstrated that maternal transfer of immunity to the offspring is costly for immune-challenged female insects. Thus, these females might not provide immune protection to all their offspring because of the inherent cost of other fitness-related traits. Females are therefore expected to adjust their investment to individual offspring immune protection in ways that maximize the…

0106 biological sciencesMealwormLipopolysaccharidesOffspringmedia_common.quotation_subjectanimal diseasesZoologyParasitismchemical and pharmacologic phenomenaecological immunologyInsectBiology[ SDV.IMM.IA ] Life Sciences [q-bio]/Immunology/Adaptive immunology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesImmune systemtrans-generational immune primingImmunity[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisAnimalsArthrobacterTenebrioResearch Articles030304 developmental biologyGeneral Environmental Sciencemedia_commonOvuminsect immunity0303 health sciences[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyGeneral Immunology and MicrobiologyMaternal effectGeneral Medicinebiochemical phenomena metabolism and nutritionFecunditybiology.organism_classificationFertility[SDV.IMM.IA]Life Sciences [q-bio]/Immunology/Adaptive immunologyImmunologybacteriamaternal effectsFemale[SDE.BE]Environmental Sciences/Biodiversity and EcologyGeneral Agricultural and Biological SciencesImmunity Maternally-Acquired[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
researchProduct

A formal classification of the Lygeum spartum vegetation of the Mediterranean Region

2019

Aims: We examined all available literature and some unpublished data on the We examined all available literature and some unpublished data on the grasslands dominated by Lygeum spartum from Southern Europe and North Africa to produce a formalised classification of this vegetation and to identify the main factors determining its plant species composition. Location: Mediterranean Basin and Iberian Peninsula. Methods: We used a dataset of 728 releves, which were resampled to reduce unbalanced sampling effort, resulting in a dataset of 568 releves and 846 taxa. We classified the plots by TWINSPAN, interpreted the resulting pools, and used them to develop formal definitions of phytosociological …

0106 biological sciencesMediterranean climateMarshVegetation classificationManagement Monitoring Policy and Law010603 evolutionary biology01 natural sciencesMediterranean BasinMediterrània (Regió)GrassesMediterranean regiondry grasslandvegetation classificationexpert systemNature and Landscape Conservationgeographygeography.geographical_feature_categoryLygeo-StipeteaEcologyPhytosociologyEcologyMediterranean RegionGramíniesSpecies diversitybadlandsbadlandEdaphicVegetationsalt marshSettore BIO/03 - Botanica Ambientale E ApplicataLygeum spartumSalicornietea fruticosaePhytosociology010606 plant biology & botany
researchProduct

Assessing geographical variation on whistle acoustic structure of three Mediterranean populations of common bottlenose dolphin (Tursiops truncatus)

2017

Whistles are acoustic signals produced particularly during social interactions. Here, we compare whistles by bottlenose dolphins from three Mediterranean areas (Croatia, Sicily and Sardinia) to investigate the presence of acoustic divergence and to discuss the possible causes of variability. Whistle parameters differ significantly between populations, but PCA highlights that the majority of variability is due to a limited number of frequency parameters. Cluster and DFA show that the Croatian population is acoustically divergent from the western populations of Sicily and Sardinia. This divergence could be consistent with geographical isolation, and a possible genetic differentiation between …

0106 biological sciencesMediterranean climateSettore BIO/07 - Ecologiaacoustic behaviour; acoustic divergence; Cetacean.; Mediterranean Sea; Animal Science and Zoology; Behavioral NeurosciencePopulationSettore BIO/05 - ZoologiaBiology010603 evolutionary biology01 natural sciencesDivergenceacoustic divergenceBehavioral NeuroscienceMediterranean seaacoustic behaviourMediterranean Seaeducationeducation.field_of_studyEcology010604 marine biology & hydrobiologyCetacean.CetaceanBottlenose dolphinbiology.organism_classificationlanguage.human_languageacoustic behaviour; acoustic divergence; Cetacean.; Mediterranean Sea;Variation (linguistics)languageAnimal Science and ZoologyAdaptationSicilian
researchProduct

Immunity and the emergence of virulent pathogens.

2013

6 pages; International audience; The emergence/re-emergence of infectious diseases has been one of the major concerns for human and wildlife health. In spite of the medical and veterinary progresses as to prevent and cure infectious diseases, during the last decades we have witnessed the emergence/re-emergence of virulent pathogens that pose a threat to humans and wildlife. Many factors that might drive the emergence of these novel pathogens have been identified and several reviews have been published on this topic in the last years. Among the most cited and recognized drivers of pathogen emergence are climate change, habitat destruction, increased contact with reservoirs, etc. These factor…

0106 biological sciencesMicrobiology (medical)[ SDV.MP.PAR ] Life Sciences [q-bio]/Microbiology and Parasitology/ParasitologyWildlifeVirulenceBiology[ SDV.IMM.IA ] Life Sciences [q-bio]/Immunology/Adaptive immunologyCommunicable Diseases Emerging010603 evolutionary biology01 natural sciencesMicrobiologyParasite diversity03 medical and health sciencesImmune systemDisease severityImmunityImmune-mediated selection[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisGeneticsAnimalsHumansParasites[SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/ParasitologyMolecular BiologyEcology Evolution Behavior and Systematics030304 developmental biology[ SDE.BE ] Environmental Sciences/Biodiversity and Ecology0303 health sciencesVirulenceEcology15. Life on land3. Good healthVaccinationInfectious DiseasesHabitat destruction[SDV.IMM.IA]Life Sciences [q-bio]/Immunology/Adaptive immunology13. Climate actionHost-Pathogen InteractionsSpite[SDE.BE]Environmental Sciences/Biodiversity and EcologyImmune-suppression[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
researchProduct

Increasing temperature alters the within-host competition of viral strains and influences virus genetic variability

2021

Environmental conditions can affect viral accumulation, virulence and adaptation, which have implications in the disease outcomes and efficiency of control measures. Concurrently, mixed viral infections are relevant in plants, being their epidemiology shaped by within-host virus–virus interactions. However, the extent in which the combined effect of variations in abiotic components of the plant ecological niche and the prevalence of mixed infections affect the evolutionary dynamics of viral populations is not well understood. Here, we explore the interplay between ecological and evolutionary factors during viral infections and show that isolates of two strains of Pepino mosaic potexvirus co…

0106 biological sciencesMixed infectionsvirusesPlant virusVirulenceBiologyEvolutionary ecology01 natural sciencesMicrobiology03 medical and health sciencesplant virusenvironmental factorsVirologyPlant virusgenetic variabilityEnvironmental factorsAcademicSubjects/MED00860Genetic variabilityEvolutionary dynamics030304 developmental biologyGenetics0303 health sciencesGenetic diversityHost (biology)mixed infectionsAcademicSubjects/SCI01130AcademicSubjects/SCI02285evolutionary ecologyGenetic variabilityEvolutionary ecologyAdaptationResearch Article010606 plant biology & botany
researchProduct

Handbook of protocols for standardized measurement of terrestrial invertebrate functional traits

2017

Trait-based approaches are increasingly being used to test mechanisms underlying species assemblages and biotic interactions across a wide range of organisms including terrestrial arthropods and to investigate consequences for ecosystem processes. Such an approach relies on the standardized measurement of functional traits that can be applied across taxa and regions. Currently, however, unified methods of trait measurements are lacking for terrestrial arthropods and related macroinvertebrates (terrestrial invertebrates hereafter). Here, we present a comprehensive review and detailed protocol for a set of 29 traits known to be sensitive to global stressors and to affect ecosystem processes a…

0106 biological sciencesMorphologylifeRange (biology)DATABASEPhysiology[SDV]Life Sciences [q-bio]BiologyFunctional diversity010603 evolutionary biology01 natural sciencesENVIRONMENTAL-CHANGE10127 Institute of Evolutionary Biology and Environmental StudiesSpecies featuresLife-historyEcosystemBehaviourTaxonomic rankEcology Evolution Behavior and SystematicsTrophic levelInvertebrateBODY-SIZECLIMATE-CHANGE[ SDV ] Life Sciences [q-bio]Ecology010604 marine biology & hydrobiologyRESPONSE DIVERSITYFeedingLABORATORY ADAPTATIONSpecies diversity15. Life on landspecies features; species characteristics; physiology; morphology; feeding; behaviour; life-history; functional diversityTaxon1105 Ecology Evolution Behavior and SystematicsSpecies characteristicsTraitCOMMUNITY-LEVEL570 Life sciences; biology590 Animals (Zoology)historySPECIES TRAITSPLANT TRAITSFunctional Ecology
researchProduct